Wall clock time and date at job start Wed Apr 1 2020 03:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99737 * 2 1 4 4 C 1.53008 * 109.46743 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46805 * 304.99600 * 4 3 2 6 6 O 1.42894 * 109.47040 * 64.99701 * 4 3 2 7 7 C 1.42901 * 113.99913 * 269.99533 * 6 4 3 8 8 C 1.50700 * 109.46988 * 184.99849 * 4 3 2 9 9 O 1.20824 * 119.99770 * 245.00249 * 8 4 3 10 10 O 1.34231 * 119.99989 * 64.99309 * 8 4 3 11 11 C 1.45198 * 116.99825 * 180.02562 * 10 8 4 12 12 C 1.50699 * 109.47129 * 180.02562 * 11 10 8 13 13 C 1.38109 * 120.02756 * 359.97438 * 12 11 10 14 14 C 1.38391 * 120.05341 * 180.02562 * 13 12 11 15 15 Cl 1.73600 * 119.94205 * 179.97438 * 14 13 12 16 16 C 1.38427 * 120.11644 * 359.97438 * 14 13 12 17 17 C 1.38078 * 120.05379 * 359.72168 * 16 14 13 18 18 C 1.38860 * 120.02759 * 180.02562 * 12 11 10 19 19 O 1.35765 * 120.05621 * 359.97438 * 18 12 11 20 20 C 1.34822 * 116.99757 * 174.67632 * 19 18 12 21 21 H 1.08000 * 120.00569 * 5.05998 * 20 19 18 22 22 C 1.38653 * 119.99888 * 185.06469 * 20 19 18 23 23 N 1.31560 * 120.00046 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00146 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47143 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47417 * 119.99663 * 24 22 20 27 27 H 1.48497 * 109.47002 * 239.99915 * 24 22 20 28 28 H 1.09002 * 109.47417 * 300.00962 * 1 2 3 29 29 H 1.09002 * 109.46946 * 60.00331 * 1 2 3 30 30 H 1.08998 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47420 * 59.99767 * 3 2 1 32 32 H 1.09006 * 109.47268 * 299.99450 * 3 2 1 33 33 H 1.09007 * 109.46921 * 180.02562 * 7 6 4 34 34 H 1.08990 * 109.47502 * 300.00397 * 7 6 4 35 35 H 1.08999 * 109.47046 * 60.00737 * 7 6 4 36 36 H 1.09002 * 109.47626 * 60.00263 * 11 10 8 37 37 H 1.09005 * 109.47515 * 300.00677 * 11 10 8 38 38 H 1.07997 * 119.97336 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.97444 * 180.02562 * 16 14 13 40 40 H 1.07994 * 120.02838 * 180.30190 * 17 16 14 41 41 H 0.96993 * 119.99952 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8507 0.5685 0.8428 6 8 3.9658 0.5791 -1.2200 7 6 4.0473 -0.8465 -1.1646 8 6 4.1479 2.5560 0.1244 9 8 4.8044 3.0086 -0.7834 10 8 3.9641 3.2747 1.2431 11 6 4.5827 4.5873 1.2925 12 6 4.2704 5.2405 2.6141 13 6 3.4987 4.5770 3.5477 14 6 3.2111 5.1765 4.7614 15 17 2.2403 4.3401 5.9325 16 6 3.6962 6.4420 5.0432 17 6 4.4734 7.1070 4.1157 18 6 4.7574 6.5105 2.8939 19 8 5.5158 7.1650 1.9775 20 6 5.8637 8.4352 2.2660 21 1 5.6099 8.8600 3.2260 22 6 6.5473 9.1963 1.3301 23 7 6.8559 8.6792 0.1605 24 14 7.0300 10.9560 1.7300 25 1 6.5691 11.2966 3.1001 26 1 8.5066 11.0934 1.6556 27 1 6.3972 11.8772 0.7521 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 4.3811 -1.2291 -2.1291 34 1 4.7578 -1.1400 -0.3920 35 1 3.0654 -1.2577 -0.9304 36 1 4.1937 5.2031 0.4816 37 1 5.6626 4.4844 1.1845 38 1 3.1194 3.5894 3.3305 39 1 3.4707 6.9076 5.9912 40 1 4.8557 8.0923 4.3379 41 1 7.3345 9.2115 -0.4941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850199595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:22 Heat of formation + Delta-G solvation = -178.661207 kcal Electronic energy + Delta-G solvation = -27516.851461 eV Core-core repulsion = 23196.602949 eV Total energy + Delta-G solvation = -4320.248512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.095 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.58241 -39.42046 -38.63652 -37.32463 -36.94055 -36.22269 -35.52614 -32.51485 -31.90819 -30.98331 -29.04075 -27.37909 -26.56188 -25.90076 -25.51470 -23.94885 -22.03877 -21.04191 -20.62226 -18.24547 -17.94345 -17.56108 -17.03982 -16.95935 -16.32747 -15.98846 -15.82415 -15.42363 -15.30741 -14.78286 -14.58912 -14.31639 -14.12330 -13.95366 -13.81133 -13.11797 -13.00675 -12.97494 -12.74146 -12.43934 -12.15712 -12.10800 -11.91074 -11.73058 -11.44604 -11.23734 -11.17378 -11.11734 -10.75689 -10.54345 -10.49072 -10.38219 -10.28296 -10.07933 -9.80170 -9.58061 -8.97332 -8.35403 -7.37308 -6.62527 -4.22265 1.83810 1.96620 2.14354 2.33175 2.74206 3.03527 3.05182 3.11142 3.40132 3.81814 3.86078 4.20522 4.51143 4.68446 4.74235 4.88513 4.99899 5.03839 5.05749 5.17773 5.18767 5.21592 5.34276 5.38264 5.39670 5.51797 5.63286 5.65995 5.83411 5.85454 6.03027 6.28902 6.48936 6.49993 6.72242 6.74798 6.78961 6.88479 7.00285 7.13224 7.40684 7.79115 7.85316 8.81315 9.42483 10.53691 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.009380 B = 0.003247 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.479309 B = 8620.102218 C =11138.694542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.045 3.955 4 C 0.106 3.894 5 H 0.107 0.893 6 O -0.358 6.358 7 C 0.030 3.970 8 C 0.461 3.539 9 O -0.473 6.473 10 O -0.354 6.354 11 C 0.137 3.863 12 C -0.164 4.164 13 C -0.043 4.043 14 C -0.126 4.126 15 Cl -0.104 7.104 16 C -0.056 4.056 17 C -0.221 4.221 18 C 0.163 3.837 19 O -0.164 6.164 20 C -0.397 4.397 21 H 0.097 0.903 22 C 0.043 3.957 23 N -0.851 5.851 24 Si 0.944 3.056 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.725 -13.996 2.974 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.032 4.032 4 C 0.046 3.954 5 H 0.125 0.875 6 O -0.276 6.276 7 C -0.067 4.067 8 C 0.301 3.699 9 O -0.357 6.357 10 O -0.272 6.272 11 C 0.064 3.936 12 C -0.165 4.165 13 C -0.062 4.062 14 C -0.153 4.153 15 Cl -0.076 7.076 16 C -0.075 4.075 17 C -0.240 4.240 18 C 0.108 3.892 19 O -0.066 6.066 20 C -0.472 4.472 21 H 0.114 0.886 22 C -0.163 4.163 23 N -0.484 5.484 24 Si 0.768 3.232 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.198 -13.924 2.172 16.829 hybrid contribution -0.006 1.012 0.522 1.139 sum -9.204 -12.912 2.694 16.084 Atomic orbital electron populations 1.22779 0.80342 1.02877 1.00474 1.87803 1.20333 1.26989 1.95588 1.22993 0.91631 0.85881 1.02697 1.21311 0.92715 0.90660 0.90721 0.87492 1.87996 1.87904 1.20688 1.30989 1.22980 1.01415 0.79658 1.02598 1.22838 0.79389 0.86893 0.80796 1.90746 1.35803 1.69827 1.39373 1.86329 1.70146 1.31296 1.39383 1.21498 0.98016 0.77895 0.96146 1.18435 1.07071 0.94607 0.96424 1.20316 0.96059 0.99120 0.90687 1.20280 1.06484 0.95743 0.92832 1.98281 1.71172 1.78777 1.59357 1.20681 0.95638 0.92440 0.98772 1.21036 1.05904 1.02708 0.94350 1.18968 0.89899 0.90806 0.89554 1.83970 1.56403 1.26708 1.39529 1.21427 1.37776 0.85502 1.02519 0.88594 1.25355 0.96185 1.00175 0.94590 1.70040 1.35764 1.37261 1.05299 0.85606 0.78692 0.79986 0.78939 1.18929 1.19964 1.19963 0.93615 0.93803 0.89438 0.90485 0.91510 0.89295 0.93896 0.91991 0.89608 0.89699 0.85057 0.86215 0.84288 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.90 8.83 -40.09 -0.35 -4.25 16 3 C 0.05 0.49 5.58 37.16 0.21 0.70 16 4 C 0.11 1.33 3.02 -27.88 -0.08 1.24 16 5 H 0.11 1.11 7.79 -51.93 -0.40 0.70 16 6 O -0.36 -4.89 9.88 -59.73 -0.59 -5.48 16 7 C 0.03 0.28 10.71 101.05 1.08 1.37 16 8 C 0.46 7.44 7.29 36.01 0.26 7.70 16 9 O -0.47 -9.49 16.26 -25.46 -0.41 -9.90 16 10 O -0.35 -5.75 8.66 -39.26 -0.34 -6.09 16 11 C 0.14 2.63 5.33 36.00 0.19 2.82 16 12 C -0.16 -3.23 5.90 -104.44 -0.62 -3.84 16 13 C -0.04 -0.75 9.16 -39.57 -0.36 -1.11 16 14 C -0.13 -2.15 6.32 -39.46 -0.25 -2.40 16 15 Cl -0.10 -1.53 28.95 -51.86 -1.50 -3.03 16 16 C -0.06 -0.98 9.82 -39.57 -0.39 -1.37 16 17 C -0.22 -4.39 9.17 -39.39 -0.36 -4.75 16 18 C 0.16 3.63 6.62 -39.11 -0.26 3.37 16 19 O -0.16 -4.30 9.19 0.03 0.00 -4.30 16 20 C -0.40 -10.30 9.49 30.89 0.29 -10.01 16 21 H 0.10 2.28 5.20 -52.49 -0.27 2.01 16 22 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 23 N -0.85 -23.78 13.67 55.48 0.76 -23.02 16 24 Si 0.94 19.46 29.55 -169.99 -5.02 14.43 16 25 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 34 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 35 H 0.06 0.56 6.40 -51.93 -0.33 0.23 16 36 H 0.09 1.76 8.13 -51.93 -0.42 1.34 16 37 H 0.08 1.73 8.13 -51.93 -0.42 1.31 16 38 H 0.13 2.04 6.99 -52.49 -0.37 1.67 16 39 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.14 2.72 5.64 -52.49 -0.30 2.42 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -30.52 372.77 -6.14 -36.66 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.03 Total: 3.28 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 0.73 Total: -3.91 kcal Atomic # 7 Polarization: -23.78 SS G_CDS: 0.76 Total: -23.02 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -1.70 Total: -30.02 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -1.50 Total: -3.03 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.52 -6.14 -36.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850199595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.001 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds