Wall clock time and date at job start Wed Apr 1 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.39509 * 126.27876 * 2 1 4 4 C 1.38589 * 133.30525 * 359.92723 * 3 2 1 5 5 C 1.38357 * 120.16653 * 180.02562 * 4 3 2 6 6 C 1.37979 * 120.37905 * 359.64841 * 5 4 3 7 7 C 1.39639 * 120.14689 * 0.66052 * 6 5 4 8 8 C 1.47580 * 120.20825 * 179.65270 * 7 6 5 9 9 O 1.21582 * 120.00378 * 179.72873 * 8 7 6 10 10 N 1.34780 * 120.00038 * 359.72409 * 8 7 6 11 11 C 1.46500 * 119.99910 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47129 * 324.99754 * 11 10 8 13 13 C 1.50699 * 109.46939 * 205.00060 * 11 10 8 14 14 H 1.08003 * 120.00271 * 359.97438 * 13 11 10 15 15 C 1.37877 * 120.00384 * 179.97438 * 13 11 10 16 16 N 1.31515 * 119.99644 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00636 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46664 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47482 * 119.99851 * 17 15 13 20 20 H 1.48497 * 109.47236 * 240.00229 * 17 15 13 21 21 C 1.52997 * 109.47473 * 85.00011 * 11 10 8 22 22 F 1.39905 * 109.47157 * 59.99740 * 21 11 10 23 23 F 1.39900 * 109.47010 * 300.00131 * 21 11 10 24 24 F 1.39897 * 109.47422 * 179.97438 * 21 11 10 25 25 C 1.39384 * 106.57228 * 179.97438 * 3 2 1 26 26 O 1.35305 * 107.36504 * 359.97438 * 25 3 2 27 27 C 1.34264 * 109.20270 * 0.02562 * 26 25 3 28 28 O 1.21594 * 125.29498 * 179.97438 * 27 26 25 29 29 H 1.09008 * 109.46498 * 89.99807 * 1 2 3 30 30 H 1.08997 * 109.47423 * 209.99798 * 1 2 3 31 31 H 1.08999 * 109.47220 * 330.00167 * 1 2 3 32 32 H 1.08009 * 119.92230 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.81216 * 180.02562 * 5 4 3 34 34 H 1.08003 * 119.92757 * 180.33825 * 6 5 4 35 35 H 0.96994 * 120.00115 * 0.02562 * 10 8 7 36 36 H 0.97006 * 120.00331 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.1246 0.0000 4 6 2.0399 2.4877 -0.0013 5 6 3.0907 3.3878 -0.0014 6 6 4.3950 2.9377 0.0070 7 6 4.6641 1.5675 0.0019 8 6 6.0587 1.0847 0.0031 9 8 6.2887 -0.1092 0.0036 10 7 7.0774 1.9672 0.0037 11 6 8.4617 1.4878 0.0044 12 1 8.5293 0.5735 0.5939 13 6 9.3574 2.5403 0.6054 14 1 8.9375 3.4731 0.9517 15 6 10.7129 2.3124 0.7131 16 7 11.2242 1.1763 0.2918 17 14 11.8231 3.6167 1.4587 18 1 11.0083 4.7942 1.8520 19 1 12.5030 3.0621 2.6567 20 1 12.8404 4.0309 0.4594 21 6 8.9033 1.2022 -1.4323 22 9 8.8166 2.3758 -2.1890 23 9 8.0718 0.2252 -1.9902 24 9 10.2255 0.7450 -1.4317 25 6 3.6027 0.6546 0.0006 26 8 3.5474 -0.6973 0.0015 27 6 2.2625 -1.0867 0.0009 28 8 1.8780 -2.2403 0.0011 29 1 -0.3632 0.0000 -1.0278 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.0218 2.8484 -0.0022 33 1 2.8888 4.4488 -0.0020 34 1 5.2096 3.6468 0.0124 35 1 6.8939 2.9196 0.0036 36 1 12.1779 1.0161 0.3672 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928811337.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:00 Heat of formation + Delta-G solvation = -173.893194 kcal Electronic energy + Delta-G solvation = -30676.995591 eV Core-core repulsion = 25713.989602 eV Total energy + Delta-G solvation = -4963.005989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.37256 -46.02632 -45.63552 -43.42549 -39.58276 -38.19382 -37.57789 -36.00643 -34.77243 -32.72200 -31.28288 -30.16105 -28.36599 -28.04681 -24.67697 -24.11607 -23.32710 -22.48337 -21.38617 -20.15073 -18.83058 -18.41822 -17.62375 -17.22358 -16.86049 -16.80920 -16.64799 -16.15071 -15.74335 -15.25033 -15.01860 -14.83761 -14.56541 -14.47986 -14.19550 -14.02853 -13.36224 -13.16363 -12.94680 -12.92958 -12.64523 -12.48698 -12.42081 -12.31849 -12.27637 -12.05785 -11.99462 -11.83618 -11.22478 -11.08154 -10.94814 -10.89607 -10.79503 -10.44939 -9.70289 -9.46233 -9.05564 -8.77385 -8.42207 -8.35442 -6.27411 -4.52162 0.45545 0.87966 1.87968 2.30034 2.65282 2.87798 3.15738 3.22481 3.25894 3.48696 3.73193 4.08717 4.17947 4.28625 4.51531 4.54914 4.73602 4.80060 4.85531 4.89825 4.94917 5.05771 5.17180 5.42472 5.53044 5.77979 5.83585 5.87260 5.94058 5.98247 6.16988 6.21611 6.86709 7.00378 7.05197 7.40136 7.47450 7.58517 8.16908 8.44173 8.72243 9.15801 10.64314 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.019159 B = 0.003303 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.090590 B = 8475.971082 C = 9090.706420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.552 5.552 3 C 0.057 3.943 4 C -0.083 4.083 5 C -0.104 4.104 6 C -0.075 4.075 7 C -0.082 4.082 8 C 0.542 3.458 9 O -0.512 6.512 10 N -0.702 5.702 11 C 0.244 3.756 12 H 0.088 0.912 13 C -0.553 4.553 14 H 0.079 0.921 15 C 0.065 3.935 16 N -0.838 5.838 17 Si 0.916 3.084 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.417 3.583 22 F -0.209 7.209 23 F -0.217 7.217 24 F -0.136 7.136 25 C 0.094 3.906 26 O -0.208 6.208 27 C 0.631 3.369 28 O -0.486 6.486 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.398 0.602 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.789 7.851 -0.005 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.285 5.285 3 C -0.040 4.040 4 C -0.104 4.104 5 C -0.123 4.123 6 C -0.095 4.095 7 C -0.087 4.087 8 C 0.327 3.673 9 O -0.388 6.388 10 N -0.353 5.353 11 C 0.139 3.861 12 H 0.106 0.894 13 C -0.590 4.590 14 H 0.097 0.903 15 C -0.144 4.144 16 N -0.471 5.471 17 Si 0.743 3.257 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.206 1.206 21 C 0.360 3.640 22 F -0.191 7.191 23 F -0.198 7.198 24 F -0.117 7.117 25 C 0.045 3.955 26 O -0.111 6.111 27 C 0.386 3.614 28 O -0.369 6.369 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.233 0.767 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.499 5.937 -0.052 19.428 hybrid contribution 0.478 0.948 -0.043 1.063 sum -18.021 6.885 -0.094 19.291 Atomic orbital electron populations 1.21787 0.73720 1.04707 1.03571 1.45745 1.08186 1.04708 1.69909 1.18443 0.88610 0.90161 1.06800 1.20188 1.00777 0.87891 1.01558 1.20933 0.91203 1.00085 1.00077 1.21292 0.98113 0.92747 0.97313 1.19257 0.92088 0.91606 1.05706 1.18002 0.84283 0.86784 0.78206 1.90874 1.84672 1.15184 1.48076 1.45970 1.06358 1.09432 1.73497 1.19801 0.77671 1.00598 0.88007 0.89435 1.20886 0.91842 1.02316 1.43956 0.90270 1.25091 0.98165 0.96514 0.94648 1.70410 1.13727 1.22865 1.40071 0.86141 0.80057 0.80745 0.78779 1.19362 1.20548 1.20562 1.23104 0.76832 0.72637 0.91381 1.92988 1.96304 1.50208 1.79584 1.93084 1.73346 1.65079 1.88340 1.93408 1.33412 1.88740 1.96127 1.18741 0.93095 0.80807 1.02887 1.85217 1.26712 1.20352 1.78860 1.18718 0.78774 0.85465 0.78453 1.91138 1.74221 1.16043 1.55531 0.90801 0.89091 0.89494 0.84441 0.83587 0.83288 0.76651 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.07 59.84 0.66 1.32 16 2 N -0.55 -6.39 3.21 -126.44 -0.41 -6.80 16 3 C 0.06 0.66 6.84 -83.81 -0.57 0.09 16 4 C -0.08 -0.64 10.02 -39.41 -0.39 -1.03 16 5 C -0.10 -0.76 10.02 -39.63 -0.40 -1.16 16 6 C -0.08 -0.78 9.53 -39.15 -0.37 -1.15 16 7 C -0.08 -1.25 5.88 -104.90 -0.62 -1.87 16 8 C 0.54 10.83 7.30 -12.45 -0.09 10.74 16 9 O -0.51 -12.52 14.65 -6.02 -0.09 -12.61 16 10 N -0.70 -13.78 4.94 -55.96 -0.28 -14.06 16 11 C 0.24 5.94 2.21 -69.08 -0.15 5.79 16 12 H 0.09 2.40 7.58 -51.93 -0.39 2.01 16 13 C -0.55 -13.60 8.46 -34.44 -0.29 -13.89 16 14 H 0.08 1.80 7.74 -52.48 -0.41 1.40 16 15 C 0.06 1.65 5.20 -17.82 -0.09 1.55 16 16 N -0.84 -22.63 9.51 55.43 0.53 -22.11 16 17 Si 0.92 19.53 29.54 -169.99 -5.02 14.51 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 C 0.42 10.58 2.81 37.16 0.10 10.68 16 22 F -0.21 -5.02 16.94 2.25 0.04 -4.98 16 23 F -0.22 -5.55 15.68 2.25 0.04 -5.52 16 24 F -0.14 -3.73 12.91 2.25 0.03 -3.71 16 25 C 0.09 1.45 6.94 -38.50 -0.27 1.19 16 26 O -0.21 -3.83 10.03 -26.06 -0.26 -4.09 16 27 C 0.63 10.15 9.07 54.06 0.49 10.64 16 28 O -0.49 -8.88 17.81 -19.00 -0.34 -9.22 16 29 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 33 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 34 H 0.15 1.25 6.40 -52.48 -0.34 0.91 16 35 H 0.40 6.34 6.57 -40.82 -0.27 6.07 16 36 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 LS Contribution 328.94 15.07 4.96 4.96 Total: -1.00 -34.35 328.94 -5.45 -39.80 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -2.65 Total: 0.93 kcal Atomic # 6 Polarization: 24.89 SS G_CDS: -1.99 Total: 22.89 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.16 Total: -42.96 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.69 Total: -25.92 kcal Atomic # 9 Polarization: -14.30 SS G_CDS: 0.10 Total: -14.20 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.35 -5.45 -39.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928811337.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.094 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds