Wall clock time and date at job start Wed Apr 1 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.39509 * 126.27876 * 2 1 4 4 C 1.38589 * 133.30525 * 359.92723 * 3 2 1 5 5 C 1.38357 * 120.16653 * 180.02562 * 4 3 2 6 6 C 1.37979 * 120.37905 * 359.64841 * 5 4 3 7 7 C 1.39639 * 120.14689 * 0.66052 * 6 5 4 8 8 C 1.47580 * 120.20825 * 179.65270 * 7 6 5 9 9 O 1.21582 * 120.00378 * 179.72873 * 8 7 6 10 10 N 1.34780 * 120.00038 * 359.72409 * 8 7 6 11 11 C 1.46500 * 119.99910 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47129 * 324.99754 * 11 10 8 13 13 C 1.50699 * 109.46939 * 205.00060 * 11 10 8 14 14 H 1.08003 * 120.00271 * 359.97438 * 13 11 10 15 15 C 1.37877 * 120.00384 * 179.97438 * 13 11 10 16 16 N 1.31515 * 119.99644 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00636 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46664 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47482 * 119.99851 * 17 15 13 20 20 H 1.48497 * 109.47236 * 240.00229 * 17 15 13 21 21 C 1.52997 * 109.47473 * 85.00011 * 11 10 8 22 22 F 1.39905 * 109.47157 * 59.99740 * 21 11 10 23 23 F 1.39900 * 109.47010 * 300.00131 * 21 11 10 24 24 F 1.39897 * 109.47422 * 179.97438 * 21 11 10 25 25 C 1.39384 * 106.57228 * 179.97438 * 3 2 1 26 26 O 1.35305 * 107.36504 * 359.97438 * 25 3 2 27 27 C 1.34264 * 109.20270 * 0.02562 * 26 25 3 28 28 O 1.21594 * 125.29498 * 179.97438 * 27 26 25 29 29 H 1.09008 * 109.46498 * 89.99807 * 1 2 3 30 30 H 1.08997 * 109.47423 * 209.99798 * 1 2 3 31 31 H 1.08999 * 109.47220 * 330.00167 * 1 2 3 32 32 H 1.08009 * 119.92230 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.81216 * 180.02562 * 5 4 3 34 34 H 1.08003 * 119.92757 * 180.33825 * 6 5 4 35 35 H 0.96994 * 120.00115 * 0.02562 * 10 8 7 36 36 H 0.97006 * 120.00331 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.1246 0.0000 4 6 2.0399 2.4877 -0.0013 5 6 3.0907 3.3878 -0.0014 6 6 4.3950 2.9377 0.0070 7 6 4.6641 1.5675 0.0019 8 6 6.0587 1.0847 0.0031 9 8 6.2887 -0.1092 0.0036 10 7 7.0774 1.9672 0.0037 11 6 8.4617 1.4878 0.0044 12 1 8.5293 0.5735 0.5939 13 6 9.3574 2.5403 0.6054 14 1 8.9375 3.4731 0.9517 15 6 10.7129 2.3124 0.7131 16 7 11.2242 1.1763 0.2918 17 14 11.8231 3.6167 1.4587 18 1 11.0083 4.7942 1.8520 19 1 12.5030 3.0621 2.6567 20 1 12.8404 4.0309 0.4594 21 6 8.9033 1.2022 -1.4323 22 9 8.8166 2.3758 -2.1890 23 9 8.0718 0.2252 -1.9902 24 9 10.2255 0.7450 -1.4317 25 6 3.6027 0.6546 0.0006 26 8 3.5474 -0.6973 0.0015 27 6 2.2625 -1.0867 0.0009 28 8 1.8780 -2.2403 0.0011 29 1 -0.3632 0.0000 -1.0278 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.0218 2.8484 -0.0022 33 1 2.8888 4.4488 -0.0020 34 1 5.2096 3.6468 0.0124 35 1 6.8939 2.9196 0.0036 36 1 12.1779 1.0161 0.3672 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928811337.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:00 Heat of formation + Delta-G solvation = -198.166838 kcal Electronic energy + Delta-G solvation = -30678.048176 eV Core-core repulsion = 25713.989602 eV Total energy + Delta-G solvation = -4964.058573 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.44523 -48.08104 -47.75203 -44.46908 -40.97164 -39.43774 -38.64267 -36.98126 -36.57789 -34.53773 -32.37621 -31.01660 -30.03758 -28.80364 -26.63030 -25.38373 -24.23978 -23.74036 -22.93390 -21.61712 -19.95582 -19.66826 -18.93022 -18.76962 -18.73455 -18.63979 -18.15871 -17.64937 -17.11485 -16.81055 -16.21904 -16.08311 -15.79091 -15.65292 -15.15273 -15.07715 -15.01237 -14.98654 -14.55309 -14.48111 -14.40190 -14.31269 -14.06431 -13.92816 -13.46307 -13.32844 -13.17320 -13.07103 -12.89977 -12.73489 -12.65308 -12.22875 -12.17699 -11.71752 -11.55945 -11.05688 -10.70312 -10.21935 -9.88414 -9.31621 -8.20821 -6.52581 -0.49137 0.03808 0.96859 1.12296 1.48779 1.49572 1.63033 1.70117 1.75004 2.02601 2.38765 2.47487 2.63206 2.94863 3.16417 3.48303 3.63680 3.76237 3.84370 3.87565 4.06610 4.11165 4.15110 4.36721 4.44149 4.65142 4.72739 4.78006 4.88889 5.08867 5.17503 5.23090 5.31805 5.50552 5.53937 5.64022 6.00422 6.39581 6.52124 6.61756 7.14462 7.26237 8.72522 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.019159 B = 0.003303 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.090590 B = 8475.971082 C = 9090.706420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.535 5.535 3 C 0.057 3.943 4 C -0.049 4.049 5 C -0.080 4.080 6 C -0.062 4.062 7 C -0.117 4.117 8 C 0.537 3.463 9 O -0.574 6.574 10 N -0.692 5.692 11 C 0.251 3.749 12 H 0.044 0.956 13 C -0.558 4.558 14 H 0.102 0.898 15 C 0.012 3.988 16 N -0.878 5.878 17 Si 0.987 3.013 18 H -0.248 1.248 19 H -0.281 1.281 20 H -0.283 1.283 21 C 0.413 3.587 22 F -0.199 7.199 23 F -0.223 7.223 24 F -0.150 7.150 25 C 0.047 3.953 26 O -0.254 6.254 27 C 0.615 3.385 28 O -0.529 6.529 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.193 0.807 33 H 0.203 0.797 34 H 0.170 0.830 35 H 0.417 0.583 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.734 13.116 0.468 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.267 5.267 3 C -0.041 4.041 4 C -0.069 4.069 5 C -0.098 4.098 6 C -0.082 4.082 7 C -0.121 4.121 8 C 0.326 3.674 9 O -0.454 6.454 10 N -0.343 5.343 11 C 0.143 3.857 12 H 0.061 0.939 13 C -0.594 4.594 14 H 0.120 0.880 15 C -0.193 4.193 16 N -0.512 5.512 17 Si 0.810 3.190 18 H -0.171 1.171 19 H -0.207 1.207 20 H -0.208 1.208 21 C 0.356 3.644 22 F -0.181 7.181 23 F -0.205 7.205 24 F -0.132 7.132 25 C -0.001 4.001 26 O -0.158 6.158 27 C 0.371 3.629 28 O -0.416 6.416 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.210 0.790 33 H 0.220 0.780 34 H 0.187 0.813 35 H 0.256 0.744 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.502 11.296 0.421 24.293 hybrid contribution 1.292 -0.599 -0.220 1.441 sum -20.210 10.698 0.201 22.868 Atomic orbital electron populations 1.22286 0.70484 1.06637 1.05348 1.45878 1.09571 1.03311 1.67967 1.18783 0.86454 0.91500 1.07316 1.20941 1.03699 0.85408 0.96893 1.21587 0.89077 1.02604 0.96572 1.21682 1.00810 0.90360 0.95305 1.19043 0.88713 0.93843 1.10459 1.18844 0.86321 0.85968 0.76303 1.90831 1.85902 1.17846 1.50792 1.45732 1.04626 1.10509 1.73474 1.19381 0.80356 0.99234 0.86687 0.93874 1.21279 0.91975 1.02792 1.43388 0.88048 1.26080 0.99875 0.98489 0.94895 1.70559 1.13928 1.25058 1.41642 0.85052 0.77909 0.78524 0.77482 1.17070 1.20718 1.20847 1.23327 0.76197 0.72703 0.92139 1.92987 1.96227 1.49459 1.79395 1.93071 1.73431 1.65489 1.88482 1.93378 1.34537 1.88992 1.96253 1.19233 0.95526 0.79764 1.05579 1.85102 1.28564 1.22883 1.79274 1.18963 0.78695 0.86170 0.79065 1.91069 1.74804 1.17797 1.57918 0.89079 0.89633 0.85157 0.78955 0.78039 0.81261 0.74354 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 11.07 127.77 1.41 2.30 16 2 N -0.53 -11.69 3.21 -784.49 -2.52 -14.21 16 3 C 0.06 1.16 6.84 38.28 0.26 1.42 16 4 C -0.05 -0.43 10.02 22.38 0.22 -0.21 16 5 C -0.08 -0.61 10.02 22.24 0.22 -0.39 16 6 C -0.06 -1.05 9.53 22.55 0.21 -0.84 16 7 C -0.12 -3.53 5.88 -20.05 -0.12 -3.65 16 8 C 0.54 22.56 7.30 86.71 0.63 23.20 16 9 O -0.57 -30.63 14.65 6.85 0.10 -30.53 16 10 N -0.69 -27.66 4.94 -449.23 -2.22 -29.88 16 11 C 0.25 12.64 2.21 44.24 0.10 12.74 16 12 H 0.04 2.56 7.58 -2.39 -0.02 2.55 16 13 C -0.56 -27.39 8.46 25.60 0.22 -27.17 16 14 H 0.10 4.41 7.74 -2.91 -0.02 4.38 16 15 C 0.01 0.59 5.20 84.65 0.44 1.03 16 16 N -0.88 -48.94 9.51 21.45 0.20 -48.73 16 17 Si 0.99 39.51 29.54 68.60 2.03 41.54 16 18 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 19 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 21 C 0.41 21.74 2.81 71.98 0.20 21.94 16 22 F -0.20 -9.60 16.94 44.97 0.76 -8.84 16 23 F -0.22 -12.08 15.68 44.97 0.70 -11.37 16 24 F -0.15 -8.64 12.91 44.97 0.58 -8.06 16 25 C 0.05 1.49 6.94 22.97 0.16 1.65 16 26 O -0.25 -10.21 10.03 15.46 0.16 -10.05 16 27 C 0.62 21.09 9.07 129.79 1.18 22.27 16 28 O -0.53 -20.92 17.81 19.20 0.34 -20.58 16 29 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.08 0.98 8.07 -2.39 -0.02 0.96 16 31 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.19 -0.26 8.06 -2.91 -0.02 -0.29 16 33 H 0.20 -0.44 8.06 -2.91 -0.02 -0.47 16 34 H 0.17 2.07 6.40 -2.91 -0.02 2.05 16 35 H 0.42 12.78 6.57 -92.71 -0.61 12.17 16 36 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -86.28 328.94 5.86 -80.41 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.58 Total: 6.02 kcal Atomic # 6 Polarization: 49.14 SS G_CDS: 5.15 Total: 54.29 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -4.53 Total: -92.82 kcal Atomic # 8 Polarization: -61.76 SS G_CDS: 0.60 Total: -61.17 kcal Atomic # 9 Polarization: -30.32 SS G_CDS: 2.05 Total: -28.27 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -86.28 5.86 -80.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928811337.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.755 kcal (2) G-P(sol) polarization free energy of solvation -86.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds