Wall clock time and date at job start Wed Apr 1 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99843 * 2 1 4 4 H 1.48502 * 109.47257 * 270.00605 * 3 2 1 5 5 H 1.48501 * 109.46991 * 30.00132 * 3 2 1 6 6 H 1.48502 * 109.47295 * 150.00448 * 3 2 1 7 7 C 1.37874 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00160 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00131 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47173 * 300.00431 * 9 7 2 11 11 O 1.42900 * 109.46745 * 60.00500 * 9 7 2 12 12 C 1.52999 * 109.47245 * 180.02562 * 9 7 2 13 13 N 1.46900 * 109.47246 * 176.69163 * 12 9 7 14 14 C 1.46958 * 110.99928 * 160.72260 * 13 12 9 15 15 C 1.53048 * 109.36645 * 183.16690 * 14 13 12 16 16 N 1.46949 * 109.38224 * 301.64052 * 15 14 13 17 17 C 1.39826 * 110.99999 * 183.17296 * 16 15 14 18 18 C 1.38859 * 120.06698 * 246.91108 * 17 16 15 19 19 C 1.38119 * 119.95292 * 179.97438 * 18 17 16 20 20 C 1.38392 * 120.08006 * 0.02562 * 19 18 17 21 21 Cl 1.73598 * 119.93494 * 179.97438 * 20 19 18 22 22 C 1.38370 * 120.12905 * 0.02562 * 20 19 18 23 23 C 1.38216 * 120.04735 * 359.68292 * 22 20 19 24 24 Cl 1.73598 * 120.04002 * 180.32019 * 23 22 20 25 25 C 1.46957 * 110.88603 * 59.30343 * 16 15 14 26 26 C 1.46949 * 111.00190 * 284.54873 * 13 12 9 27 27 H 0.96996 * 120.00144 * 359.97438 * 1 2 3 28 28 H 0.96696 * 114.00090 * 60.00202 * 11 9 7 29 29 H 1.09006 * 109.46997 * 56.69287 * 12 9 7 30 30 H 1.08996 * 109.47001 * 296.69567 * 12 9 7 31 31 H 1.09007 * 109.46636 * 63.21468 * 14 13 12 32 32 H 1.08996 * 109.51017 * 303.15117 * 14 13 12 33 33 H 1.08993 * 109.48954 * 181.65781 * 15 14 13 34 34 H 1.09002 * 109.48110 * 61.61347 * 15 14 13 35 35 H 1.07999 * 120.02517 * 0.02789 * 18 17 16 36 36 H 1.08005 * 119.96238 * 179.97438 * 19 18 17 37 37 H 1.07999 * 119.97561 * 179.97438 * 22 20 19 38 38 H 1.09001 * 109.48183 * 60.64704 * 25 16 15 39 39 H 1.08998 * 109.48986 * 180.68943 * 25 16 15 40 40 H 1.09006 * 109.49045 * 56.84232 * 26 13 12 41 41 H 1.09000 * 109.49453 * 296.77880 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4292 -2.5746 -1.1671 12 6 2.2454 -3.6620 -0.0005 13 7 1.5127 -4.9328 0.0794 14 6 2.3511 -6.0532 -0.3691 15 6 1.5286 -7.3437 -0.3457 16 7 1.0258 -7.5770 1.0152 17 6 0.3284 -8.7865 1.0913 18 6 -1.0395 -8.7869 1.3301 19 6 -1.7262 -9.9830 1.4042 20 6 -1.0526 -11.1809 1.2413 21 17 -1.9193 -12.6820 1.3359 22 6 0.3107 -11.1844 1.0043 23 6 1.0021 -9.9903 0.9231 24 17 2.7109 -9.9947 0.6174 25 6 0.1872 -6.4564 1.4632 26 6 1.0099 -5.1661 1.4403 27 1 -0.4850 0.8400 0.0004 28 1 0.9211 -2.5291 -1.9984 29 1 2.9104 -3.5715 0.8584 30 1 2.8323 -3.6382 -0.9186 31 1 3.2075 -6.1557 0.2976 32 1 2.7006 -5.8630 -1.3838 33 1 2.1568 -8.1809 -0.6498 34 1 0.6878 -7.2514 -1.0332 35 1 -1.5663 -7.8527 1.4569 36 1 -2.7901 -9.9836 1.5904 37 1 0.8340 -12.1206 0.8780 38 1 -0.6689 -6.3538 0.7963 39 1 -0.1629 -6.6470 2.4776 40 1 0.3817 -4.3288 1.7445 41 1 1.8507 -5.2587 2.1278 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930964054.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:10 Heat of formation + Delta-G solvation = -15.521845 kcal Electronic energy + Delta-G solvation = -25351.808022 eV Core-core repulsion = 21511.635679 eV Total energy + Delta-G solvation = -3840.172342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.080 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.64405 -38.58609 -37.03718 -36.61543 -36.00035 -34.39539 -32.08723 -31.59737 -30.68540 -30.31135 -28.26220 -26.06449 -24.40467 -23.82142 -22.40996 -22.05080 -20.43994 -19.62676 -18.13795 -17.05611 -16.52863 -16.36483 -15.28433 -15.06866 -14.93319 -14.76871 -14.57139 -14.26347 -14.17884 -14.06639 -13.96740 -13.54448 -13.04695 -12.80142 -12.61588 -12.48549 -12.17753 -11.96868 -11.48395 -11.30574 -11.28644 -11.18967 -11.06517 -11.04798 -10.95221 -10.78220 -10.52141 -10.41716 -10.01372 -9.67712 -9.23872 -9.04214 -8.58781 -8.18584 -8.10261 -7.67127 -6.01780 -4.20248 0.69160 0.76545 1.60460 2.06583 3.06632 3.26206 3.33501 3.35759 3.52780 4.24079 4.36026 4.44518 4.58254 4.74689 4.82904 5.01605 5.12384 5.24303 5.26096 5.31015 5.38971 5.42692 5.47063 5.59509 5.69254 5.77091 5.84631 5.98274 6.00043 6.10773 6.11498 6.19702 6.29326 6.55118 6.73892 6.78635 6.91661 7.44702 7.52637 7.75660 7.86967 8.18983 8.83844 9.45019 9.61281 11.02227 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.024689 B = 0.002280 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.849052 B =12279.062449 C =13076.801449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.240 3.760 10 H 0.053 0.947 11 O -0.555 6.555 12 C 0.032 3.968 13 N -0.528 5.528 14 C 0.057 3.943 15 C 0.056 3.944 16 N -0.487 5.487 17 C 0.133 3.867 18 C -0.147 4.147 19 C -0.078 4.078 20 C -0.054 4.054 21 Cl -0.067 7.067 22 C -0.081 4.081 23 C -0.044 4.044 24 Cl -0.047 7.047 25 C 0.053 3.947 26 C 0.059 3.941 27 H 0.260 0.740 28 H 0.341 0.659 29 H 0.031 0.969 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.637 -23.528 2.265 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.182 3.818 10 H 0.071 0.929 11 O -0.356 6.356 12 C -0.095 4.095 13 N -0.253 5.253 14 C -0.072 4.072 15 C -0.069 4.069 16 N -0.202 5.202 17 C 0.034 3.966 18 C -0.168 4.168 19 C -0.098 4.098 20 C -0.082 4.082 21 Cl -0.038 7.038 22 C -0.101 4.101 23 C -0.074 4.074 24 Cl -0.018 7.018 25 C -0.074 4.074 26 C -0.070 4.070 27 H 0.070 0.930 28 H 0.184 0.816 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.147 -23.502 2.691 23.683 hybrid contribution 1.201 0.853 -0.181 1.484 sum 0.054 -22.649 2.510 22.788 Atomic orbital electron populations 1.70079 1.05892 1.26391 1.47020 1.25017 0.94681 0.99054 0.93860 0.86688 0.79951 0.83592 0.78215 1.20525 1.21123 1.19903 1.21657 0.93130 0.91655 1.54886 0.92786 1.19274 0.87764 0.88351 0.86424 0.92896 1.86564 1.37798 1.96297 1.14956 1.23105 0.97064 0.89562 0.99808 1.62226 1.38081 1.02156 1.22852 1.22150 0.94318 0.89949 1.00798 1.22454 0.99551 0.98866 0.86014 1.59306 1.35744 1.00560 1.24578 1.18869 0.90754 0.90313 0.96690 1.21444 0.92306 0.99138 1.03938 1.21028 1.00723 0.90179 0.97842 1.20613 0.92114 0.87575 1.07859 1.98373 1.76381 1.32158 1.96887 1.20749 0.92296 0.97549 0.99530 1.20385 0.86050 0.92831 1.08094 1.98367 1.11063 1.98516 1.93846 1.22451 0.95097 0.89225 1.00580 1.22147 0.98567 0.96160 0.90098 0.93004 0.81580 0.95120 0.91951 0.94553 0.90141 0.89314 0.92804 0.83391 0.84288 0.83909 0.92196 0.89864 0.89018 0.94513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.03 12.84 55.43 0.71 -24.32 16 2 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.57 -15.44 8.76 -34.44 -0.30 -15.74 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.24 5.89 2.90 -27.88 -0.08 5.81 16 10 H 0.05 1.43 6.76 -51.93 -0.35 1.08 16 11 O -0.55 -14.10 12.65 -35.23 -0.45 -14.54 16 12 C 0.03 0.63 4.58 -3.82 -0.02 0.61 16 13 N -0.53 -9.07 4.56 -234.47 -1.07 -10.14 16 14 C 0.06 0.81 5.57 -3.77 -0.02 0.79 16 15 C 0.06 0.71 5.24 -3.77 -0.02 0.69 16 16 N -0.49 -6.10 4.39 -170.92 -0.75 -6.85 16 17 C 0.13 1.51 5.42 -83.71 -0.45 1.06 16 18 C -0.15 -1.45 8.85 -39.40 -0.35 -1.80 16 19 C -0.08 -0.69 9.82 -39.57 -0.39 -1.08 16 20 C -0.05 -0.49 6.32 -39.48 -0.25 -0.74 16 21 Cl -0.07 -0.56 28.95 -51.86 -1.50 -2.06 16 22 C -0.08 -0.76 9.61 -39.54 -0.38 -1.14 16 23 C -0.04 -0.47 6.15 -39.32 -0.24 -0.71 16 24 Cl -0.05 -0.50 25.95 -51.86 -1.35 -1.84 16 25 C 0.05 0.68 4.32 -3.77 -0.02 0.67 16 26 C 0.06 0.93 5.43 -3.77 -0.02 0.91 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.34 7.80 9.04 45.56 0.41 8.21 16 29 H 0.03 0.61 8.00 -51.93 -0.42 0.20 16 30 H 0.06 1.20 7.85 -51.93 -0.41 0.79 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.10 8.00 -51.93 -0.42 0.68 16 33 H 0.09 1.04 5.42 -51.93 -0.28 0.76 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.15 1.34 5.89 -52.49 -0.31 1.03 16 36 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.06 0.79 7.09 -51.93 -0.37 0.42 16 39 H 0.08 0.93 7.70 -51.93 -0.40 0.53 16 40 H 0.09 1.59 6.72 -51.93 -0.35 1.24 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -29.59 357.63 -11.21 -40.80 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.54 Total: 6.29 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.64 Total: -8.57 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: -1.11 Total: -41.31 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.45 Total: -14.54 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -2.85 Total: -3.91 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.59 -11.21 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930964054.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.273 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds