Wall clock time and date at job start Wed Apr 1 2020 03:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42099 * 108.57452 * 2 1 4 4 O 1.42099 * 108.57767 * 228.97330 * 2 1 3 5 5 C 1.81401 * 101.92083 * 114.48559 * 2 1 3 6 6 H 1.08999 * 110.91820 * 67.44979 * 5 2 1 7 7 C 1.55155 * 111.00111 * 191.35081 * 5 2 1 8 8 C 1.54327 * 102.93990 * 153.57549 * 7 5 2 9 9 N 1.47015 * 107.27408 * 337.80736 * 8 7 5 10 10 C 1.34777 * 125.65042 * 178.96544 * 9 8 7 11 11 O 1.21593 * 119.99970 * 179.97438 * 10 9 8 12 12 N 1.34775 * 119.99903 * 359.96738 * 10 9 8 13 13 C 1.46502 * 119.99875 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47059 * 35.00585 * 13 12 10 15 15 C 1.50698 * 109.46828 * 155.00336 * 13 12 10 16 16 H 1.07996 * 120.00055 * 0.02562 * 15 13 12 17 17 C 1.37881 * 119.99787 * 179.97438 * 15 13 12 18 18 N 1.31511 * 119.99886 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99830 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47191 * 90.00435 * 19 17 15 21 21 H 1.48501 * 109.47334 * 210.00357 * 19 17 15 22 22 H 1.48500 * 109.47584 * 330.00528 * 19 17 15 23 23 C 1.52999 * 109.47348 * 275.00281 * 13 12 10 24 24 F 1.39902 * 109.46868 * 60.00264 * 23 13 12 25 25 F 1.39900 * 109.47043 * 180.02562 * 23 13 12 26 26 F 1.39899 * 109.46797 * 300.00278 * 23 13 12 27 27 C 1.47426 * 108.70225 * 358.93990 * 9 8 7 28 28 H 1.09002 * 109.47488 * 305.51252 * 1 2 3 29 29 H 1.09001 * 109.47561 * 65.51139 * 1 2 3 30 30 H 1.09008 * 109.47171 * 185.51768 * 1 2 3 31 31 H 1.08996 * 110.72119 * 35.21682 * 7 5 2 32 32 H 1.09000 * 110.72301 * 271.93712 * 7 5 2 33 33 H 1.08999 * 109.87976 * 218.38614 * 8 7 5 34 34 H 1.09004 * 109.88011 * 97.22356 * 8 7 5 35 35 H 0.97003 * 120.00087 * 0.02562 * 12 10 9 36 36 H 0.97000 * 119.99521 * 179.97438 * 18 17 15 37 37 H 1.08998 * 110.36718 * 142.96820 * 27 9 8 38 38 H 1.09005 * 110.36600 * 265.29381 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.8871 -1.7826 1.6455 7 6 3.6931 -0.5801 1.9616 8 6 3.6959 -0.5964 3.5048 9 7 2.3483 -0.2106 3.9479 10 6 1.9370 -0.1249 5.2285 11 8 0.7942 0.2062 5.4792 12 7 2.7924 -0.4065 6.2313 13 6 2.3451 -0.3139 7.6233 14 1 1.3018 -0.6223 7.6910 15 6 3.1922 -1.2153 8.4840 16 1 3.9847 -1.7984 8.0388 17 6 2.9561 -1.2947 9.8401 18 7 1.9914 -0.5842 10.3823 19 14 4.0057 -2.4126 10.9070 20 1 5.1822 -1.6573 11.4078 21 1 3.2016 -2.8964 12.0579 22 1 4.4679 -3.5728 10.1035 23 6 2.4824 1.1307 8.1081 24 9 1.6959 1.9675 7.3090 25 9 2.0558 1.2189 9.4376 26 9 3.8214 1.5265 8.0212 27 6 1.5215 0.0677 2.7595 28 1 -0.3634 0.5969 0.8365 29 1 -0.3634 0.4260 -0.9352 30 1 -0.3634 -1.0230 0.0988 31 1 4.0795 0.3670 1.5853 32 1 4.2685 -1.4171 1.5660 33 1 4.4286 0.1172 3.8816 34 1 3.9319 -1.5980 3.8644 35 1 3.7041 -0.6704 6.0313 36 1 1.8251 -0.6404 11.3363 37 1 0.4998 -0.2768 2.9191 38 1 1.5322 1.1335 2.5310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932901062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:15 Heat of formation + Delta-G solvation = -220.471614 kcal Electronic energy + Delta-G solvation = -29541.023211 eV Core-core repulsion = 24711.441381 eV Total energy + Delta-G solvation = -4829.581830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.085 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -48.35018 -46.00266 -45.61981 -39.99406 -37.64433 -37.24449 -36.37614 -34.70420 -32.77863 -31.72018 -30.40667 -29.01895 -28.12618 -24.63453 -23.98590 -22.09935 -21.38176 -19.67366 -19.15640 -18.47992 -17.58662 -16.92039 -16.85547 -16.62598 -16.41152 -16.21357 -15.89974 -15.36342 -15.02134 -14.76719 -14.48766 -13.98992 -13.62527 -13.56104 -13.40512 -13.05057 -12.92541 -12.91387 -12.54015 -12.46328 -12.40128 -12.33956 -12.31205 -12.24866 -12.01598 -11.97650 -11.82812 -11.46259 -11.30990 -11.19580 -10.91965 -10.83707 -10.78901 -10.43479 -9.71861 -9.66879 -8.77741 -8.64768 -8.21502 -6.27210 -4.51528 -0.40662 2.28709 2.86368 3.16079 3.16273 3.22636 3.24954 3.52764 3.63973 3.80931 4.10710 4.15012 4.42712 4.45779 4.49726 4.60675 4.65265 4.89016 4.90084 4.92738 5.24628 5.30918 5.36308 5.48355 5.50899 5.68728 5.80798 5.86257 6.12444 6.25124 6.80337 7.13105 7.30773 7.55007 7.60108 8.42720 8.50592 9.03507 9.17871 10.64325 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.002957 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.344360 B = 9466.872896 C = 9960.383372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.433 3.567 3 O -0.931 6.931 4 O -0.938 6.938 5 C -0.600 4.600 6 H 0.151 0.849 7 C -0.106 4.106 8 C 0.105 3.895 9 N -0.638 5.638 10 C 0.718 3.282 11 O -0.579 6.579 12 N -0.721 5.721 13 C 0.262 3.738 14 H 0.086 0.914 15 C -0.553 4.553 16 H 0.077 0.923 17 C 0.065 3.935 18 N -0.839 5.839 19 Si 0.916 3.084 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.271 1.271 23 C 0.415 3.585 24 F -0.216 7.216 25 F -0.137 7.137 26 F -0.210 7.210 27 C 0.148 3.852 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.395 0.605 36 H 0.269 0.731 37 H 0.093 0.907 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 -1.668 -16.991 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.614 3.386 3 O -0.928 6.928 4 O -0.935 6.935 5 C -0.709 4.709 6 H 0.169 0.831 7 C -0.145 4.145 8 C -0.019 4.019 9 N -0.379 5.379 10 C 0.420 3.580 11 O -0.455 6.455 12 N -0.373 5.373 13 C 0.156 3.844 14 H 0.104 0.896 15 C -0.590 4.590 16 H 0.095 0.905 17 C -0.144 4.144 18 N -0.472 5.472 19 Si 0.742 3.258 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.195 1.195 23 C 0.359 3.641 24 F -0.198 7.198 25 F -0.118 7.118 26 F -0.192 7.192 27 C 0.023 3.977 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.229 0.771 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.120 -1.047 -17.116 17.149 hybrid contribution 0.446 -0.693 1.201 1.457 sum 0.565 -1.740 -15.915 16.020 Atomic orbital electron populations 1.30269 1.26074 1.12035 1.12178 1.07565 0.78625 0.75753 0.76672 1.93619 1.79211 1.33962 1.86055 1.93606 1.79400 1.67254 1.53223 1.31728 1.06142 1.13251 1.19734 0.83129 1.22463 0.90926 1.04591 0.96502 1.21926 0.85380 1.01182 0.93384 1.47429 1.12271 1.74309 1.03849 1.15559 0.85002 0.78455 0.78957 1.90933 1.18004 1.54482 1.82114 1.45279 1.14265 1.72137 1.05660 1.19652 1.00818 0.87517 0.76448 0.89645 1.20856 1.18832 1.26905 0.92373 0.90509 1.25076 0.95791 0.95581 0.97907 1.70403 1.28494 1.35344 1.12936 0.86202 0.79782 0.80243 0.79533 1.20192 1.20775 1.19516 1.23165 0.72104 0.91578 0.77249 1.93075 1.75484 1.76197 1.75081 1.93404 1.89261 1.96138 1.32991 1.92985 1.37118 1.92751 1.96321 1.21719 0.95726 0.98224 0.81991 0.84756 0.85078 0.85044 0.88840 0.88183 0.90654 0.90779 0.77097 0.92067 0.88840 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.97 10.28 101.05 1.04 -1.93 16 2 S 2.43 17.93 5.02 -107.50 -0.54 17.39 16 3 O -0.93 -10.22 17.45 -57.83 -1.01 -11.23 16 4 O -0.94 -9.79 18.10 -57.83 -1.05 -10.84 16 5 C -0.60 -4.47 3.53 -24.58 -0.09 -4.55 16 6 H 0.15 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.11 -0.84 6.43 -24.90 -0.16 -1.00 16 8 C 0.11 1.11 6.15 -3.07 -0.02 1.10 16 9 N -0.64 -9.21 3.33 -176.24 -0.59 -9.80 16 10 C 0.72 14.16 8.02 -86.92 -0.70 13.46 16 11 O -0.58 -13.55 15.17 5.28 0.08 -13.47 16 12 N -0.72 -14.61 4.95 -59.81 -0.30 -14.91 16 13 C 0.26 6.43 2.21 -69.08 -0.15 6.27 16 14 H 0.09 2.35 7.58 -51.93 -0.39 1.95 16 15 C -0.55 -13.82 8.46 -34.44 -0.29 -14.11 16 16 H 0.08 1.81 7.74 -52.49 -0.41 1.40 16 17 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 18 N -0.84 -22.67 9.50 55.43 0.53 -22.14 16 19 Si 0.92 19.72 29.54 -169.99 -5.02 14.70 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 23 C 0.42 10.62 2.81 37.16 0.10 10.73 16 24 F -0.22 -5.53 15.67 2.25 0.04 -5.50 16 25 F -0.14 -3.77 12.91 2.25 0.03 -3.74 16 26 F -0.21 -5.16 16.94 2.25 0.04 -5.12 16 27 C 0.15 1.62 5.55 -2.53 -0.01 1.60 16 28 H 0.13 0.52 7.68 -51.92 -0.40 0.12 16 29 H 0.13 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.09 0.72 7.69 -51.93 -0.40 0.32 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.40 6.91 7.52 -40.82 -0.31 6.60 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.09 0.95 8.04 -51.93 -0.42 0.53 16 38 H 0.08 0.83 7.81 -51.93 -0.41 0.42 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -36.36 339.74 -7.44 -43.80 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.40 Total: 2.59 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -0.37 Total: 13.15 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.36 Total: -46.84 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.98 Total: -35.54 kcal Atomic # 9 Polarization: -14.45 SS G_CDS: 0.10 Total: -14.35 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 17.93 SS G_CDS: -0.54 Total: 17.39 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.36 -7.44 -43.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932901062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.674 kcal (2) G-P(sol) polarization free energy of solvation -36.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds