Wall clock time and date at job start Wed Apr 1 2020 03:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42099 * 108.57452 * 2 1 4 4 O 1.42099 * 108.57767 * 228.97330 * 2 1 3 5 5 C 1.81401 * 101.92083 * 114.48559 * 2 1 3 6 6 H 1.08999 * 110.91820 * 67.44979 * 5 2 1 7 7 C 1.55155 * 111.00111 * 191.35081 * 5 2 1 8 8 C 1.54327 * 102.93990 * 153.57549 * 7 5 2 9 9 N 1.47015 * 107.27408 * 337.80736 * 8 7 5 10 10 C 1.34777 * 125.65042 * 178.96544 * 9 8 7 11 11 O 1.21593 * 119.99970 * 179.97438 * 10 9 8 12 12 N 1.34775 * 119.99903 * 359.96738 * 10 9 8 13 13 C 1.46502 * 119.99875 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47059 * 35.00585 * 13 12 10 15 15 C 1.50698 * 109.46828 * 155.00336 * 13 12 10 16 16 H 1.07996 * 120.00055 * 0.02562 * 15 13 12 17 17 C 1.37881 * 119.99787 * 179.97438 * 15 13 12 18 18 N 1.31511 * 119.99886 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99830 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47191 * 90.00435 * 19 17 15 21 21 H 1.48501 * 109.47334 * 210.00357 * 19 17 15 22 22 H 1.48500 * 109.47584 * 330.00528 * 19 17 15 23 23 C 1.52999 * 109.47348 * 275.00281 * 13 12 10 24 24 F 1.39902 * 109.46868 * 60.00264 * 23 13 12 25 25 F 1.39900 * 109.47043 * 180.02562 * 23 13 12 26 26 F 1.39899 * 109.46797 * 300.00278 * 23 13 12 27 27 C 1.47426 * 108.70225 * 358.93990 * 9 8 7 28 28 H 1.09002 * 109.47488 * 305.51252 * 1 2 3 29 29 H 1.09001 * 109.47561 * 65.51139 * 1 2 3 30 30 H 1.09008 * 109.47171 * 185.51768 * 1 2 3 31 31 H 1.08996 * 110.72119 * 35.21682 * 7 5 2 32 32 H 1.09000 * 110.72301 * 271.93712 * 7 5 2 33 33 H 1.08999 * 109.87976 * 218.38614 * 8 7 5 34 34 H 1.09004 * 109.88011 * 97.22356 * 8 7 5 35 35 H 0.97003 * 120.00087 * 0.02562 * 12 10 9 36 36 H 0.97000 * 119.99521 * 179.97438 * 18 17 15 37 37 H 1.08998 * 110.36718 * 142.96820 * 27 9 8 38 38 H 1.09005 * 110.36600 * 265.29381 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.8871 -1.7826 1.6455 7 6 3.6931 -0.5801 1.9616 8 6 3.6959 -0.5964 3.5048 9 7 2.3483 -0.2106 3.9479 10 6 1.9370 -0.1249 5.2285 11 8 0.7942 0.2062 5.4792 12 7 2.7924 -0.4065 6.2313 13 6 2.3451 -0.3139 7.6233 14 1 1.3018 -0.6223 7.6910 15 6 3.1922 -1.2153 8.4840 16 1 3.9847 -1.7984 8.0388 17 6 2.9561 -1.2947 9.8401 18 7 1.9914 -0.5842 10.3823 19 14 4.0057 -2.4126 10.9070 20 1 5.1822 -1.6573 11.4078 21 1 3.2016 -2.8964 12.0579 22 1 4.4679 -3.5728 10.1035 23 6 2.4824 1.1307 8.1081 24 9 1.6959 1.9675 7.3090 25 9 2.0558 1.2189 9.4376 26 9 3.8214 1.5265 8.0212 27 6 1.5215 0.0677 2.7595 28 1 -0.3634 0.5969 0.8365 29 1 -0.3634 0.4260 -0.9352 30 1 -0.3634 -1.0230 0.0988 31 1 4.0795 0.3670 1.5853 32 1 4.2685 -1.4171 1.5660 33 1 4.4286 0.1172 3.8816 34 1 3.9319 -1.5980 3.8644 35 1 3.7041 -0.6704 6.0313 36 1 1.8251 -0.6404 11.3363 37 1 0.4998 -0.2768 2.9191 38 1 1.5322 1.1335 2.5310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932901062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:14 Heat of formation + Delta-G solvation = -248.958613 kcal Electronic energy + Delta-G solvation = -29542.258500 eV Core-core repulsion = 24711.441381 eV Total energy + Delta-G solvation = -4830.817119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.085 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.40978 -48.04577 -47.72137 -41.28796 -38.78883 -38.00037 -37.08792 -36.48651 -34.54227 -32.90802 -31.00324 -30.07766 -29.44522 -26.59908 -25.18837 -23.22460 -22.78261 -21.19088 -19.91526 -19.70104 -18.87636 -18.77906 -18.65014 -18.24752 -17.71982 -17.01614 -17.00315 -16.78993 -16.50198 -16.16924 -15.60798 -15.10092 -14.95367 -14.75949 -14.54678 -14.45250 -14.32507 -14.25066 -14.14300 -14.00683 -13.90991 -13.86475 -13.79279 -13.22088 -13.07062 -13.06385 -13.01800 -12.77769 -12.69316 -12.65048 -12.21505 -12.12926 -11.92044 -11.56951 -11.44681 -11.28589 -10.69229 -10.21191 -9.58739 -8.21025 -6.52086 -0.98742 1.44850 1.48441 1.51223 1.60718 1.81500 2.06760 2.36704 2.52889 2.56237 2.91737 2.94839 3.00155 3.28116 3.44766 3.78575 3.86247 3.87990 4.13687 4.14562 4.16559 4.17506 4.31092 4.48496 4.62136 4.68747 4.79750 4.86400 4.98357 5.02493 5.21828 5.40538 5.54614 5.64933 6.04581 6.52847 6.98655 7.18283 7.55672 8.71745 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.002957 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.344360 B = 9466.872896 C = 9960.383372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.448 3.552 3 O -0.973 6.973 4 O -0.969 6.969 5 C -0.586 4.586 6 H 0.178 0.822 7 C -0.108 4.108 8 C 0.094 3.906 9 N -0.635 5.635 10 C 0.712 3.288 11 O -0.624 6.624 12 N -0.717 5.717 13 C 0.271 3.729 14 H 0.049 0.951 15 C -0.561 4.561 16 H 0.092 0.908 17 C 0.016 3.984 18 N -0.874 5.874 19 Si 0.984 3.016 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.256 1.256 23 C 0.411 3.589 24 F -0.219 7.219 25 F -0.150 7.150 26 F -0.204 7.204 27 C 0.132 3.868 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.156 0.844 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.409 0.591 36 H 0.269 0.731 37 H 0.100 0.900 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 -3.233 -18.302 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.633 3.367 3 O -0.970 6.970 4 O -0.966 6.966 5 C -0.694 4.694 6 H 0.196 0.804 7 C -0.146 4.146 8 C -0.029 4.029 9 N -0.374 5.374 10 C 0.414 3.586 11 O -0.504 6.504 12 N -0.371 5.371 13 C 0.163 3.837 14 H 0.067 0.933 15 C -0.597 4.597 16 H 0.110 0.890 17 C -0.190 4.190 18 N -0.508 5.508 19 Si 0.807 3.193 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.180 1.180 23 C 0.355 3.645 24 F -0.201 7.201 25 F -0.132 7.132 26 F -0.186 7.186 27 C 0.008 3.992 28 H 0.162 0.838 29 H 0.163 0.837 30 H 0.175 0.825 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.245 0.755 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.076 -2.621 -18.511 18.727 hybrid contribution 0.113 -0.166 1.531 1.544 sum 1.189 -2.786 -16.980 17.249 Atomic orbital electron populations 1.30175 1.21971 1.14165 1.13441 1.06930 0.79848 0.74172 0.75785 1.93567 1.81028 1.35926 1.86482 1.93567 1.81063 1.67685 1.54250 1.31680 1.05483 1.14295 1.17991 0.80438 1.22574 0.91667 1.06015 0.94383 1.22243 0.83282 1.01923 0.95403 1.47439 1.14424 1.72731 1.02781 1.15709 0.84286 0.78245 0.80345 1.90890 1.19839 1.56411 1.83289 1.45002 1.15076 1.72594 1.04402 1.19222 0.99008 0.86729 0.78774 0.93331 1.21197 1.18995 1.26865 0.92682 0.88987 1.25990 0.96827 0.96824 0.99315 1.70533 1.30147 1.36955 1.13161 0.85150 0.77847 0.78610 0.77652 1.20055 1.20829 1.17967 1.23390 0.72202 0.92199 0.76720 1.93063 1.75638 1.76359 1.75051 1.93376 1.89461 1.96250 1.34063 1.92981 1.36599 1.92748 1.96265 1.22026 0.96163 0.99223 0.81744 0.83836 0.83717 0.82531 0.88804 0.85318 0.90468 0.89372 0.75491 0.92135 0.88169 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -3.92 10.28 113.37 1.17 -2.75 16 2 S 2.45 31.48 5.02 -56.49 -0.28 31.19 16 3 O -0.97 -20.56 17.45 -127.37 -2.22 -22.78 16 4 O -0.97 -18.48 18.10 -127.37 -2.30 -20.79 16 5 C -0.59 -7.24 3.53 31.99 0.11 -7.13 16 6 H 0.18 1.23 8.14 -2.39 -0.02 1.21 16 7 C -0.11 -1.44 6.43 31.78 0.20 -1.24 16 8 C 0.09 1.81 6.15 86.73 0.53 2.34 16 9 N -0.63 -17.65 3.33 -829.75 -2.76 -20.41 16 10 C 0.71 28.14 8.02 179.06 1.44 29.57 16 11 O -0.62 -29.89 15.17 -4.01 -0.06 -29.95 16 12 N -0.72 -29.01 4.95 -461.40 -2.28 -31.29 16 13 C 0.27 13.50 2.21 44.24 0.10 13.60 16 14 H 0.05 2.79 7.58 -2.38 -0.02 2.77 16 15 C -0.56 -27.83 8.46 25.60 0.22 -27.62 16 16 H 0.09 4.18 7.74 -2.91 -0.02 4.16 16 17 C 0.02 0.81 5.20 84.66 0.44 1.25 16 18 N -0.87 -47.93 9.50 21.45 0.20 -47.73 16 19 Si 0.98 39.75 29.54 68.60 2.03 41.77 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 23 C 0.41 21.41 2.81 71.98 0.20 21.61 16 24 F -0.22 -11.46 15.67 44.97 0.70 -10.76 16 25 F -0.15 -8.48 12.91 44.97 0.58 -7.90 16 26 F -0.20 -10.03 16.94 44.97 0.76 -9.27 16 27 C 0.13 2.68 5.55 86.86 0.48 3.17 16 28 H 0.14 0.72 7.68 -2.39 -0.02 0.70 16 29 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.09 1.27 7.69 -2.39 -0.02 1.25 16 32 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.41 13.91 7.52 -92.71 -0.70 13.21 16 36 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 37 H 0.10 1.89 8.04 -2.39 -0.02 1.87 16 38 H 0.08 1.62 7.81 -2.38 -0.02 1.60 16 Total: -1.00 -79.98 339.74 -0.32 -80.31 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.42 Total: 14.80 kcal Atomic # 6 Polarization: 27.91 SS G_CDS: 4.89 Total: 32.80 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -4.84 Total: -99.43 kcal Atomic # 8 Polarization: -68.93 SS G_CDS: -4.59 Total: -73.51 kcal Atomic # 9 Polarization: -29.97 SS G_CDS: 2.05 Total: -27.92 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.77 kcal Atomic # 16 Polarization: 31.48 SS G_CDS: -0.28 Total: 31.19 kcal Total: -79.98 -0.32 -80.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932901062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.653 kcal (2) G-P(sol) polarization free energy of solvation -79.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds