Wall clock time and date at job start Wed Apr 1 2020 03:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34783 * 119.99797 * 2 1 4 4 O 1.21587 * 120.00090 * 179.97438 * 3 2 1 5 5 N 1.34781 * 120.00017 * 359.97438 * 3 2 1 6 6 C 1.46499 * 119.99874 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.47391 * 325.00213 * 6 5 3 8 8 C 1.50699 * 109.47060 * 205.00285 * 6 5 3 9 9 H 1.07999 * 120.00019 * 0.02562 * 8 6 5 10 10 C 1.37877 * 120.00129 * 180.02562 * 8 6 5 11 11 N 1.31519 * 119.99723 * 359.97438 * 10 8 6 12 12 Si 1.86803 * 119.99900 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47147 * 90.00197 * 12 10 8 14 14 H 1.48499 * 109.46797 * 209.99607 * 12 10 8 15 15 H 1.48500 * 109.47032 * 329.99738 * 12 10 8 16 16 C 1.53000 * 109.46840 * 85.00543 * 6 5 3 17 17 F 1.39898 * 109.46890 * 179.97438 * 16 6 5 18 18 F 1.39904 * 109.47059 * 299.99397 * 16 6 5 19 19 F 1.39895 * 109.47411 * 59.99655 * 16 6 5 20 20 C 1.46498 * 120.00348 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.64127 * 180.70456 * 20 2 1 22 22 C 1.53871 * 109.64654 * 60.26843 * 20 2 1 23 23 C 1.55044 * 106.62574 * 192.96589 * 22 20 2 24 24 S 1.83291 * 102.56493 * 42.43493 * 23 22 20 25 25 O 1.42102 * 109.35282 * 90.18566 * 24 23 22 26 26 O 1.42102 * 109.35680 * 223.25276 * 24 23 22 27 27 C 1.54164 * 109.64403 * 301.12822 * 20 2 1 28 28 H 1.09000 * 109.47494 * 90.00357 * 1 2 3 29 29 H 1.09002 * 109.47175 * 210.00541 * 1 2 3 30 30 H 1.09003 * 109.47725 * 329.99941 * 1 2 3 31 31 H 0.97002 * 119.99716 * 0.02562 * 5 3 2 32 32 H 0.97003 * 119.99231 * 179.97438 * 11 10 8 33 33 H 1.08995 * 110.02924 * 312.26092 * 22 20 2 34 34 H 1.09002 * 110.02414 * 73.68240 * 22 20 2 35 35 H 1.08997 * 110.79023 * 160.70365 * 23 22 20 36 36 H 1.09000 * 110.79273 * 284.16906 * 23 22 20 37 37 H 1.09007 * 110.32333 * 266.66273 * 27 20 2 38 38 H 1.08996 * 110.32162 * 28.85784 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3547 1.1673 0.0005 5 7 1.4649 2.3345 -0.0005 6 6 2.1973 3.6032 -0.0011 7 1 3.1081 3.4973 0.5884 8 6 1.3333 4.6823 0.5990 9 1 0.3383 4.4466 0.9464 10 6 1.8131 5.9706 0.7044 11 7 3.0250 6.2576 0.2817 12 14 0.7418 7.3084 1.4475 13 1 0.9704 7.3682 2.9136 14 1 1.0905 8.6170 0.8385 15 1 -0.6869 7.0033 1.1812 16 6 2.5611 3.9814 -1.4383 17 9 3.2600 5.1933 -1.4389 18 9 3.3632 2.9796 -1.9953 19 9 1.3922 4.1174 -2.1948 20 6 2.1975 -1.2687 0.0006 21 1 3.2697 -1.0726 0.0131 22 6 1.8338 -2.0766 -1.2574 23 6 2.3692 -3.5141 -1.0316 24 16 1.9174 -3.8380 0.7150 25 8 0.6249 -4.4265 0.7657 26 8 3.0077 -4.4668 1.3746 27 6 1.8067 -2.0922 1.2438 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3635 0.8900 0.5138 31 1 0.4948 2.3344 -0.0005 32 1 3.3624 7.1641 0.3556 33 1 0.7519 -2.0974 -1.3879 34 1 2.3077 -1.6354 -2.1343 35 1 1.8731 -4.2207 -1.6970 36 1 3.4504 -3.5496 -1.1644 37 1 2.5041 -1.9008 2.0593 38 1 0.7887 -1.8533 1.5514 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932924651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:28 Heat of formation + Delta-G solvation = -218.140831 kcal Electronic energy + Delta-G solvation = -29791.081620 eV Core-core repulsion = 24961.600860 eV Total energy + Delta-G solvation = -4829.480759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.085 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -48.38702 -46.04089 -45.65258 -40.07492 -37.37255 -37.17457 -36.26851 -34.75115 -33.90127 -32.46261 -30.02307 -28.22695 -27.11855 -25.10280 -24.59083 -22.29358 -20.97937 -19.52146 -19.12053 -18.61891 -17.18762 -17.08529 -16.83928 -16.71799 -16.56858 -16.07483 -15.78413 -15.61252 -15.04803 -14.84931 -14.44972 -14.23076 -13.90144 -13.40219 -13.08795 -12.94834 -12.93448 -12.60275 -12.53264 -12.45594 -12.43650 -12.39951 -12.31052 -12.24808 -12.21905 -11.99000 -11.84424 -11.42522 -11.24331 -11.00295 -10.89251 -10.87851 -10.62609 -10.44544 -9.73752 -9.67649 -8.79704 -8.73018 -8.28201 -6.29252 -4.53603 -0.26441 2.18160 2.78667 3.14440 3.21325 3.23921 3.27447 3.54222 3.73770 4.00918 4.13089 4.24183 4.34970 4.40762 4.51220 4.55933 4.68641 4.88108 4.95591 5.11560 5.25814 5.30575 5.41159 5.60604 5.65297 5.69305 5.78751 5.83262 6.14920 6.40022 6.73230 7.06802 7.21109 7.48479 7.57655 8.38459 8.46969 8.98405 9.15467 10.62326 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.003062 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.163538 B = 9142.014111 C = 9626.488378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.628 5.628 3 C 0.702 3.298 4 O -0.579 6.579 5 N -0.722 5.722 6 C 0.260 3.740 7 H 0.086 0.914 8 C -0.553 4.553 9 H 0.077 0.923 10 C 0.066 3.934 11 N -0.838 5.838 12 Si 0.916 3.084 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.271 1.271 16 C 0.416 3.584 17 F -0.137 7.137 18 F -0.217 7.217 19 F -0.210 7.210 20 C 0.169 3.831 21 H 0.126 0.874 22 C -0.133 4.133 23 C -0.583 4.583 24 S 2.393 3.607 25 O -0.938 6.938 26 O -0.937 6.937 27 C -0.613 4.613 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.396 0.604 32 H 0.269 0.731 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 -14.544 -1.874 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.366 5.366 3 C 0.403 3.597 4 O -0.455 6.455 5 N -0.375 5.375 6 C 0.154 3.846 7 H 0.104 0.896 8 C -0.590 4.590 9 H 0.095 0.905 10 C -0.143 4.143 11 N -0.471 5.471 12 Si 0.742 3.258 13 H -0.202 1.202 14 H -0.208 1.208 15 H -0.195 1.195 16 C 0.360 3.640 17 F -0.118 7.118 18 F -0.199 7.199 19 F -0.192 7.192 20 C 0.062 3.938 21 H 0.144 0.856 22 C -0.173 4.173 23 C -0.714 4.714 24 S 2.576 3.424 25 O -0.935 6.935 26 O -0.934 6.934 27 C -0.743 4.743 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.231 0.769 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.234 -15.159 -1.409 15.802 hybrid contribution -0.908 1.577 -0.412 1.866 sum -5.142 -13.581 -1.821 14.636 Atomic orbital electron populations 1.21797 0.80066 1.03371 1.02169 1.46882 1.06007 1.03997 1.79726 1.15991 0.85512 0.80395 0.77766 1.90916 1.11306 1.85807 1.57503 1.45424 1.09958 1.04456 1.77705 1.19651 0.96621 0.80589 0.87711 0.89644 1.20848 1.01723 0.92484 1.43957 0.90533 1.25075 0.95723 0.98903 0.94645 1.70403 1.15569 1.21139 1.40029 0.86204 0.80218 0.80211 0.79145 1.20180 1.20761 1.19534 1.23167 0.73729 0.75571 0.91572 1.93406 1.79059 1.43181 1.96142 1.93070 1.75442 1.62991 1.88386 1.92983 1.50602 1.95986 1.79627 1.21151 1.00239 0.83173 0.89256 0.85642 1.22612 1.03101 0.91063 1.00491 1.30571 1.11907 1.05276 1.23605 1.08916 0.75599 0.78316 0.79590 1.93621 1.39366 1.74499 1.85977 1.93625 1.54431 1.72879 1.72491 1.31017 1.12436 1.22504 1.08344 0.92228 0.90862 0.90531 0.76877 0.92052 0.89132 0.87680 0.84218 0.84037 0.83625 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 9.02 59.84 0.54 1.19 16 2 N -0.63 -8.19 2.79 -178.45 -0.50 -8.69 16 3 C 0.70 13.02 7.81 -86.91 -0.68 12.34 16 4 O -0.58 -12.89 14.25 5.29 0.08 -12.82 16 5 N -0.72 -13.98 4.85 -59.81 -0.29 -14.27 16 6 C 0.26 6.24 2.21 -69.08 -0.15 6.09 16 7 H 0.09 2.31 7.58 -51.93 -0.39 1.91 16 8 C -0.55 -13.60 8.46 -34.44 -0.29 -13.89 16 9 H 0.08 1.77 7.74 -52.49 -0.41 1.36 16 10 C 0.07 1.66 5.20 -17.82 -0.09 1.56 16 11 N -0.84 -22.42 9.50 55.43 0.53 -21.90 16 12 Si 0.92 19.52 29.54 -169.99 -5.02 14.50 16 13 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 16 C 0.42 10.36 2.81 37.16 0.10 10.47 16 17 F -0.14 -3.70 12.91 2.25 0.03 -3.67 16 18 F -0.22 -5.36 15.68 2.25 0.04 -5.32 16 19 F -0.21 -5.02 16.94 2.25 0.04 -4.98 16 20 C 0.17 1.77 2.95 -66.87 -0.20 1.57 16 21 H 0.13 1.51 6.91 -51.93 -0.36 1.16 16 22 C -0.13 -1.03 5.93 -25.20 -0.15 -1.17 16 23 C -0.58 -3.49 7.31 38.24 0.28 -3.21 16 24 S 2.39 19.68 6.10 -107.50 -0.66 19.03 16 25 O -0.94 -10.44 18.14 -57.73 -1.05 -11.49 16 26 O -0.94 -11.17 18.15 -57.73 -1.05 -12.22 16 27 C -0.61 -5.03 6.78 37.77 0.26 -4.77 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.50 6.28 -51.93 -0.33 0.17 16 30 H 0.08 0.72 6.36 -51.93 -0.33 0.39 16 31 H 0.40 6.54 6.27 -40.82 -0.26 6.29 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.09 0.57 7.38 -51.93 -0.38 0.18 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.15 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.14 1.00 6.13 -51.93 -0.32 0.69 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -35.36 332.31 -7.25 -42.61 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.02 Total: 4.03 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -0.38 Total: 10.18 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.26 Total: -44.86 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -2.02 Total: -36.53 kcal Atomic # 9 Polarization: -14.07 SS G_CDS: 0.10 Total: -13.97 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: 19.68 SS G_CDS: -0.66 Total: 19.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.36 -7.25 -42.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932924651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.531 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds