Wall clock time and date at job start Wed Apr 1 2020 02:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64758 * 204.17202 * 5 4 2 7 7 O 1.21283 * 120.00280 * 359.97331 * 6 5 4 8 8 C 1.50706 * 120.00115 * 179.97438 * 6 5 4 9 9 O 1.42894 * 109.47209 * 180.02562 * 8 6 5 10 10 C 1.36273 * 116.99938 * 180.02562 * 9 8 6 11 11 C 1.38681 * 122.59790 * 359.97438 * 10 9 8 12 12 C 1.33417 * 114.88983 * 180.02562 * 11 10 9 13 13 S 1.75857 * 109.67795 * 0.02562 * 12 11 10 14 14 C 1.33713 * 122.59660 * 179.71080 * 10 9 8 15 15 Cl 1.73601 * 125.20060 * 359.95687 * 14 10 9 16 16 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 17 17 C 1.54327 * 107.26790 * 358.93814 * 16 5 4 18 18 H 1.09001 * 110.71543 * 96.16961 * 17 16 5 19 19 N 1.46497 * 110.71583 * 219.44194 * 17 16 5 20 20 C 1.36936 * 120.00157 * 268.52321 * 19 17 16 21 21 H 1.07999 * 120.00237 * 0.02562 * 20 19 17 22 22 C 1.38814 * 120.00050 * 180.02562 * 20 19 17 23 23 N 1.31619 * 119.99959 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00110 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47272 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47249 * 120.00247 * 24 22 20 27 27 H 1.48507 * 109.47259 * 240.00244 * 24 22 20 28 28 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 29 29 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 30 30 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 31 31 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 32 32 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 33 33 H 1.09005 * 109.46757 * 300.00262 * 8 6 5 34 34 H 1.08998 * 109.46915 * 59.99877 * 8 6 5 35 35 H 1.07994 * 122.55234 * 359.97438 * 11 10 9 36 36 H 1.08004 * 125.15812 * 179.97438 * 12 11 10 37 37 H 1.08993 * 109.88066 * 239.51797 * 16 5 4 38 38 H 1.09003 * 109.87770 * 118.35455 * 16 5 4 39 39 H 0.96996 * 119.99952 * 88.52453 * 19 17 16 40 40 H 0.97004 * 120.00137 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4494 -1.5589 -1.5928 7 8 4.3032 -1.4969 -2.7952 8 6 5.7732 -1.9901 -1.0160 9 8 6.6875 -2.2688 -2.0782 10 6 7.9398 -2.6748 -1.7260 11 6 8.3346 -2.8184 -0.4044 12 6 9.5944 -3.2238 -0.2356 13 16 10.3596 -3.4474 -1.8030 14 6 8.8815 -2.9704 -2.6281 15 17 8.6775 -2.8916 -4.3503 16 6 3.4678 -1.2731 0.6969 17 6 2.0861 -0.8075 1.2025 18 1 1.4471 -1.6631 1.4211 19 7 2.2278 0.0502 2.3817 20 6 2.1990 -0.4994 3.6356 21 1 2.0722 -1.5653 3.7552 22 6 2.3328 0.3133 4.7529 23 7 2.4868 1.6123 4.6072 24 14 2.2927 -0.4363 6.4634 25 1 2.1096 -1.9060 6.3556 26 1 3.5716 -0.1471 7.1607 27 1 1.1657 0.1482 7.2338 28 1 -0.3633 0.5029 0.8962 29 1 -0.3633 0.5248 -0.8836 30 1 -0.3633 -1.0275 -0.0125 31 1 1.4531 -1.6706 -1.4022 32 1 2.1567 -0.1721 -2.0834 33 1 6.1747 -1.1920 -0.3915 34 1 5.6319 -2.8871 -0.4130 35 1 7.6729 -2.6166 0.4249 36 1 10.0720 -3.3888 0.7190 37 1 4.2425 -0.5984 1.0609 38 1 3.6658 -2.2883 1.0411 39 1 2.3421 1.0074 2.2743 40 1 2.5799 2.1803 5.3880 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939294128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:06 Heat of formation + Delta-G solvation = -21.321479 kcal Electronic energy + Delta-G solvation = -24945.426878 eV Core-core repulsion = 21107.046751 eV Total energy + Delta-G solvation = -3838.380127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.46794 -39.54055 -37.64667 -36.76779 -35.92580 -34.18189 -32.67713 -30.84925 -30.13226 -28.22963 -27.60398 -25.64408 -24.27154 -24.03789 -21.72460 -20.26093 -20.01507 -19.15099 -18.70404 -17.49642 -17.25758 -16.67909 -16.25356 -16.03421 -15.47689 -14.75140 -14.69963 -14.20828 -14.09408 -13.71938 -13.68368 -13.54530 -13.17753 -13.12069 -12.72761 -12.47666 -12.30021 -12.14767 -11.79144 -11.62504 -11.42845 -11.24070 -11.22437 -11.09343 -10.90662 -10.84026 -10.68294 -10.31527 -10.07629 -9.89144 -9.72867 -9.10336 -8.95350 -8.47894 -8.32018 -7.19791 -5.94294 -3.25769 0.49881 0.83820 1.37225 2.07889 2.26238 2.61869 2.63892 3.32061 3.38383 3.40689 3.62281 4.33222 4.42428 4.50993 4.78957 4.86434 4.91202 4.95444 5.04110 5.15742 5.25707 5.47746 5.49443 5.53511 5.65274 5.75672 5.76967 5.81674 5.91897 6.10611 6.14332 6.25764 6.37939 6.41799 6.54267 6.75844 6.89767 7.54102 7.61117 8.18832 8.23118 9.35066 9.88076 10.22898 11.27391 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.002659 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.958005 B =10526.439292 C =12567.584925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.117 3.883 5 N -0.610 5.610 6 C 0.530 3.470 7 O -0.529 6.529 8 C 0.046 3.954 9 O -0.269 6.269 10 C 0.125 3.875 11 C -0.187 4.187 12 C -0.176 4.176 13 S 0.169 5.831 14 C -0.205 4.205 15 Cl -0.003 7.003 16 C 0.066 3.934 17 C 0.178 3.822 18 H 0.071 0.929 19 N -0.710 5.710 20 C -0.250 4.250 21 H 0.073 0.927 22 C -0.007 4.007 23 N -0.927 5.927 24 Si 0.907 3.093 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.158 0.842 36 H 0.179 0.821 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.387 0.613 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.333 -9.363 -11.316 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.102 0.898 4 C -0.006 4.006 5 N -0.345 5.345 6 C 0.317 3.683 7 O -0.405 6.405 8 C -0.033 4.033 9 O -0.182 6.182 10 C 0.067 3.933 11 C -0.219 4.219 12 C -0.313 4.313 13 S 0.429 5.571 14 C -0.348 4.348 15 Cl 0.026 6.974 16 C -0.060 4.060 17 C 0.066 3.934 18 H 0.089 0.911 19 N -0.350 5.350 20 C -0.381 4.381 21 H 0.091 0.909 22 C -0.204 4.204 23 N -0.575 5.575 24 Si 0.738 3.262 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.217 1.217 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.175 0.825 36 H 0.196 0.804 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.222 0.778 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.619 -9.848 -12.659 20.408 hybrid contribution -1.256 0.419 1.700 2.155 sum 11.363 -9.430 -10.958 18.388 Atomic orbital electron populations 1.21597 0.93712 1.01731 1.02018 1.22675 0.96475 0.99835 0.94524 0.89760 1.22293 0.82056 0.98267 0.97972 1.48392 1.11867 1.66145 1.08110 1.19504 0.84134 0.78293 0.86390 1.90734 1.82679 1.52833 1.14257 1.22514 0.88614 1.02600 0.89592 1.86306 1.17923 1.81487 1.32485 1.17681 0.86036 0.98147 0.91472 1.20242 0.98170 1.07350 0.96129 1.25592 0.98090 1.05688 1.01902 1.84291 1.09914 1.67405 0.95535 1.24124 0.99292 1.21262 0.90171 1.98358 1.96790 1.97208 1.05092 1.23479 1.03965 1.01360 0.77228 1.21234 0.91336 0.93939 0.86938 0.91142 1.42375 1.86248 1.06257 1.00122 1.19283 1.43084 0.92621 0.83143 0.90882 1.24775 1.02162 0.95427 0.98026 1.69668 1.55803 1.02845 1.29145 0.86132 0.77294 0.78217 0.84569 1.20441 1.21772 1.21733 0.91290 0.93133 0.92790 0.91402 0.90760 0.88680 0.88871 0.82482 0.80383 0.90685 0.92032 0.77820 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.29 37.16 0.35 -1.42 16 2 C -0.12 -1.70 3.27 -88.47 -0.29 -1.99 16 3 H 0.08 1.33 8.01 -51.93 -0.42 0.91 16 4 C 0.12 1.65 6.38 -2.53 -0.02 1.63 16 5 N -0.61 -9.13 3.33 -170.52 -0.57 -9.70 16 6 C 0.53 8.43 7.93 -10.98 -0.09 8.35 16 7 O -0.53 -10.31 16.75 -14.36 -0.24 -10.55 16 8 C 0.05 0.58 4.52 36.01 0.16 0.75 16 9 O -0.27 -3.96 9.54 -40.52 -0.39 -4.35 16 10 C 0.12 1.55 6.61 -41.00 -0.27 1.28 16 11 C -0.19 -1.81 9.16 -41.10 -0.38 -2.18 16 12 C -0.18 -1.39 11.22 29.05 0.33 -1.06 16 13 S 0.17 1.46 23.34 -107.50 -2.51 -1.05 16 14 C -0.21 -2.46 7.10 29.15 0.21 -2.25 16 15 Cl 0.00 -0.04 29.12 -51.86 -1.51 -1.55 16 16 C 0.07 1.00 6.24 -3.06 -0.02 0.98 16 17 C 0.18 3.05 3.08 -66.10 -0.20 2.84 16 18 H 0.07 1.22 7.99 -51.93 -0.41 0.80 16 19 N -0.71 -15.63 5.15 -51.65 -0.27 -15.90 16 20 C -0.25 -6.22 9.96 -15.06 -0.15 -6.37 16 21 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 23 N -0.93 -26.02 13.06 55.49 0.72 -25.30 16 24 Si 0.91 20.77 29.55 -169.99 -5.02 15.75 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.07 0.89 8.03 -51.93 -0.42 0.48 16 32 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16 33 H 0.10 1.06 7.85 -51.93 -0.41 0.66 16 34 H 0.09 0.98 7.84 -51.93 -0.41 0.57 16 35 H 0.16 1.27 6.91 -52.49 -0.36 0.90 16 36 H 0.18 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.39 9.25 7.76 -40.82 -0.32 8.93 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -30.72 368.62 -9.93 -40.64 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.23 Total: 6.17 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -0.47 Total: 0.27 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.11 Total: -50.89 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.63 Total: -14.89 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.51 Total: -1.05 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.51 Total: -1.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.72 -9.93 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939294128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.322 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds