Wall clock time and date at job start Wed Apr 1 2020 02:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 110.00355 * 2 1 4 4 C 1.54323 * 109.88292 * 238.89921 * 2 1 3 5 5 H 1.09004 * 110.72324 * 144.41367 * 4 2 1 6 6 N 1.46501 * 110.71888 * 21.14451 * 4 2 1 7 7 C 1.36932 * 120.00186 * 155.00069 * 6 4 2 8 8 H 1.07997 * 119.99875 * 359.97438 * 7 6 4 9 9 C 1.38810 * 120.00163 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00108 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00183 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47131 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.47018 * 119.99749 * 11 9 7 14 14 H 1.48500 * 109.47171 * 239.99638 * 11 9 7 15 15 C 1.55160 * 102.94475 * 262.77736 * 4 2 1 16 16 C 1.55125 * 101.48377 * 324.33271 * 15 4 2 17 17 N 1.47024 * 109.88125 * 121.09340 * 2 1 3 18 18 C 1.34771 * 125.65094 * 300.43730 * 17 2 1 19 19 O 1.21286 * 119.99981 * 0.02562 * 18 17 2 20 20 C 1.50701 * 120.00513 * 180.02562 * 18 17 2 21 21 O 1.42897 * 109.47323 * 180.02562 * 20 18 17 22 22 C 1.36278 * 116.99669 * 179.97438 * 21 20 18 23 23 C 1.38685 * 122.60247 * 0.25074 * 22 21 20 24 24 C 1.33408 * 114.89335 * 180.28788 * 23 22 21 25 25 S 1.75863 * 109.67595 * 359.73404 * 24 23 22 26 26 C 1.33710 * 122.59148 * 180.02562 * 22 21 20 27 27 Cl 1.73599 * 125.20576 * 0.02562 * 26 22 21 28 28 H 1.09000 * 109.46776 * 300.36397 * 1 2 3 29 29 H 1.09002 * 109.47229 * 60.35740 * 1 2 3 30 30 H 1.08993 * 109.47379 * 180.36332 * 1 2 3 31 31 H 0.97000 * 119.99920 * 334.99614 * 6 4 2 32 32 H 0.96997 * 120.00494 * 179.97438 * 10 9 7 33 33 H 1.08997 * 111.00311 * 82.56999 * 15 4 2 34 34 H 1.08992 * 111.00606 * 206.42061 * 15 4 2 35 35 H 1.09000 * 110.49926 * 278.45077 * 16 15 4 36 36 H 1.09002 * 110.34146 * 156.05963 * 16 15 4 37 37 H 1.09002 * 109.47164 * 59.99683 * 20 18 17 38 38 H 1.09003 * 109.46766 * 300.00593 * 20 18 17 39 39 H 1.08000 * 122.55082 * 0.04346 * 23 22 21 40 40 H 1.08001 * 125.16229 * 179.76859 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 2.9656 -0.2833 -1.6182 6 7 1.0292 -0.8027 -2.2875 7 6 1.3953 -0.9389 -3.5999 8 1 2.4401 -1.0069 -3.8648 9 6 0.4235 -0.9897 -4.5898 10 7 -0.8498 -0.9074 -4.2669 11 14 0.9229 -1.1749 -6.3803 12 1 2.4031 -1.2455 -6.4766 13 1 0.3315 -2.4199 -6.9329 14 1 0.4311 -0.0071 -7.1547 15 6 2.3518 -2.1696 -0.6922 16 6 2.8612 -1.8466 0.7369 17 7 2.0299 -0.7140 1.1840 18 6 1.7753 -0.3844 2.4657 19 8 1.0785 0.5757 2.7180 20 6 2.3564 -1.2087 3.5855 21 8 1.9458 -0.6636 4.8410 22 6 2.3876 -1.2961 5.9643 23 6 3.2038 -2.4165 5.9189 24 6 3.5395 -2.9152 7.1098 25 16 2.8138 -1.9446 8.3842 26 6 2.0712 -0.8820 7.1957 27 17 1.0736 0.4899 7.5647 28 1 -0.3633 0.5195 0.8867 29 1 -0.3634 0.5083 -0.8932 30 1 -0.3634 -1.0276 0.0065 31 1 0.0909 -0.7413 -2.0496 32 1 -1.5288 -0.9425 -4.9587 33 1 1.4451 -2.7737 -0.6602 34 1 3.1268 -2.6620 -1.2794 35 1 3.9122 -1.5589 0.7116 36 1 2.7177 -2.7048 1.3934 37 1 3.4444 -1.1937 3.5209 38 1 2.0017 -2.2360 3.5023 39 1 3.5386 -2.8542 4.9901 40 1 4.1629 -3.7830 7.2674 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987170590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:40 Heat of formation + Delta-G solvation = -10.014112 kcal Electronic energy + Delta-G solvation = -25033.571165 eV Core-core repulsion = 21195.681363 eV Total energy + Delta-G solvation = -3837.889803 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.58265 -39.69012 -37.58613 -36.82004 -36.00669 -34.27238 -31.91740 -30.79412 -30.24980 -29.13506 -27.38724 -25.27503 -24.38017 -23.53618 -22.68188 -20.50953 -19.55691 -18.82356 -18.76509 -17.75232 -17.36630 -16.71329 -16.29571 -15.90725 -15.45562 -14.80594 -14.63938 -14.33321 -14.21402 -13.87398 -13.77333 -13.43105 -13.36616 -12.90891 -12.51612 -12.43269 -12.08013 -11.92152 -11.83921 -11.63840 -11.51438 -11.37087 -11.24164 -11.00932 -10.96564 -10.86858 -10.52149 -10.24938 -10.03492 -9.79412 -9.57151 -9.05626 -9.00743 -8.51571 -8.41630 -7.08030 -5.86144 -3.16443 0.39169 0.74401 1.27241 2.00312 2.14862 2.56594 2.61383 3.37917 3.43411 3.46093 3.53961 4.22118 4.39779 4.51036 4.63723 4.71535 4.77001 4.92823 5.12101 5.16794 5.27714 5.34544 5.46850 5.49108 5.58107 5.65148 5.74997 5.96656 6.03704 6.17244 6.24525 6.47875 6.51318 6.62367 6.74801 6.85475 6.93217 7.60757 7.62308 8.20530 8.32050 9.43858 9.98207 10.33009 11.36184 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.029560 B = 0.002054 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.002672 B =13627.903280 C =14309.058616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 H 0.073 0.927 4 C 0.174 3.826 5 H 0.067 0.933 6 N -0.716 5.716 7 C -0.246 4.246 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.154 4.154 16 C 0.093 3.907 17 N -0.607 5.607 18 C 0.529 3.471 19 O -0.516 6.516 20 C 0.046 3.954 21 O -0.267 6.267 22 C 0.122 3.878 23 C -0.187 4.187 24 C -0.179 4.179 25 S 0.172 5.828 26 C -0.204 4.204 27 Cl 0.000 7.000 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.391 0.609 32 H 0.256 0.744 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.155 0.845 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.166 -5.903 24.685 27.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 H 0.091 0.909 4 C 0.062 3.938 5 H 0.085 0.915 6 N -0.359 5.359 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.195 4.195 16 C -0.030 4.030 17 N -0.343 5.343 18 C 0.315 3.685 19 O -0.391 6.391 20 C -0.033 4.033 21 O -0.180 6.180 22 C 0.064 3.936 23 C -0.219 4.219 24 C -0.315 4.315 25 S 0.432 5.568 26 C -0.347 4.347 27 Cl 0.029 6.971 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.229 0.771 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.173 0.827 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 10.600 -5.095 26.289 28.800 hybrid contribution 0.028 -0.306 -2.557 2.576 sum 10.628 -5.401 23.732 26.558 Atomic orbital electron populations 1.22009 0.94408 1.02443 1.02900 1.21932 0.95549 0.95839 0.84031 0.90876 1.21181 0.93326 0.91967 0.87341 0.91496 1.42664 1.04497 1.86937 1.01781 1.19284 0.92603 1.42755 0.83041 0.90962 1.24771 0.95236 1.02520 0.98150 1.69667 0.98911 1.56850 1.32303 0.86105 0.77542 0.77297 0.85111 1.20503 1.21838 1.21795 1.23609 1.01735 1.01478 0.92701 1.22506 0.94600 0.88229 0.97676 1.48488 1.50382 1.30984 1.04444 1.19440 0.81709 0.85297 0.82080 1.90753 1.37467 1.28048 1.82833 1.22532 1.00533 0.97998 0.82243 1.86343 1.69327 1.51443 1.10880 1.17686 0.96272 0.93028 0.86567 1.20178 1.03227 0.98090 1.00432 1.25576 1.05681 1.04785 0.95509 1.84341 1.45854 1.20011 1.06578 1.24167 1.12555 1.02717 0.95309 1.98371 1.66260 1.38607 1.93887 0.92095 0.90021 0.92546 0.77079 0.93365 0.90562 0.90437 0.91305 0.91448 0.89072 0.89036 0.82717 0.80455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 7.93 37.15 0.29 -2.68 16 2 C 0.13 2.23 3.48 -66.96 -0.23 2.00 16 3 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.17 3.18 3.48 -66.09 -0.23 2.95 16 5 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 6 N -0.72 -16.79 4.94 -51.65 -0.26 -17.04 16 7 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 11 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 C -0.15 -2.30 6.78 -24.46 -0.17 -2.47 16 16 C 0.09 1.06 6.70 -2.41 -0.02 1.04 16 17 N -0.61 -8.78 3.08 -162.88 -0.50 -9.28 16 18 C 0.53 8.02 7.71 -10.99 -0.08 7.93 16 19 O -0.52 -10.07 15.40 -14.36 -0.22 -10.29 16 20 C 0.05 0.50 4.33 36.01 0.16 0.66 16 21 O -0.27 -3.61 9.54 -40.54 -0.39 -3.99 16 22 C 0.12 1.35 6.61 -41.00 -0.27 1.08 16 23 C -0.19 -1.42 9.16 -41.10 -0.38 -1.80 16 24 C -0.18 -1.08 11.22 29.04 0.33 -0.75 16 25 S 0.17 1.28 23.34 -107.50 -2.51 -1.23 16 26 C -0.20 -2.24 7.10 29.14 0.21 -2.03 16 27 Cl 0.00 0.00 29.12 -51.86 -1.51 -1.51 16 28 H 0.06 1.16 6.74 -51.93 -0.35 0.81 16 29 H 0.08 1.66 6.82 -51.93 -0.35 1.31 16 30 H 0.06 1.06 8.01 -51.93 -0.42 0.65 16 31 H 0.39 9.79 5.06 -40.82 -0.21 9.58 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.59 7.48 -51.93 -0.39 0.20 16 37 H 0.09 0.73 7.84 -51.93 -0.41 0.32 16 38 H 0.09 0.78 7.56 -51.93 -0.39 0.38 16 39 H 0.16 0.81 6.91 -52.49 -0.36 0.45 16 40 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -32.65 360.58 -9.85 -42.49 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.96 Total: 6.33 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -0.64 Total: -1.04 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.03 Total: -52.76 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.61 Total: -14.29 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.51 Total: -1.23 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.51 Total: -1.51 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.65 -9.85 -42.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987170590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.478 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds