Wall clock time and date at job start Wed Apr 1 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87705 * 2 1 4 4 C 1.54319 * 109.88662 * 121.01683 * 2 1 3 5 5 H 1.09003 * 110.71646 * 23.24879 * 4 2 1 6 6 N 1.46500 * 110.72341 * 260.15231 * 4 2 1 7 7 C 1.36939 * 120.00061 * 154.99521 * 6 4 2 8 8 H 1.07998 * 119.99940 * 0.02562 * 7 6 4 9 9 C 1.38814 * 120.00031 * 180.02562 * 7 6 4 10 10 N 1.31626 * 119.99574 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00042 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47044 * 60.00091 * 11 9 7 13 13 H 1.48503 * 109.47004 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46758 * 299.99665 * 11 9 7 15 15 C 1.55158 * 102.94298 * 141.60794 * 4 2 1 16 16 C 1.54904 * 101.58496 * 324.50135 * 15 4 2 17 17 N 1.47023 * 109.88230 * 238.98837 * 2 1 3 18 18 C 1.34779 * 125.65235 * 61.60280 * 17 2 1 19 19 O 1.21282 * 119.99391 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00233 * 179.97438 * 18 17 2 21 21 O 1.42895 * 109.46964 * 180.02562 * 20 18 17 22 22 C 1.36277 * 117.00125 * 180.02562 * 21 20 18 23 23 C 1.38685 * 122.59341 * 359.97438 * 22 21 20 24 24 C 1.33416 * 114.89336 * 179.97438 * 23 22 21 25 25 S 1.75863 * 109.67248 * 0.02562 * 24 23 22 26 26 C 1.33708 * 122.60003 * 179.71088 * 22 21 20 27 27 Cl 1.73594 * 125.20005 * 359.95780 * 26 22 21 28 28 H 1.09002 * 109.47153 * 299.29616 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.29807 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.29788 * 1 2 3 31 31 H 0.96996 * 119.99667 * 334.99939 * 6 4 2 32 32 H 0.97000 * 119.99608 * 179.97438 * 10 9 7 33 33 H 1.09002 * 111.00062 * 82.57845 * 15 4 2 34 34 H 1.09007 * 111.00472 * 206.42304 * 15 4 2 35 35 H 1.08994 * 110.36903 * 155.84534 * 16 15 4 36 36 H 1.09003 * 110.36693 * 278.05969 * 16 15 4 37 37 H 1.09008 * 109.47238 * 300.00310 * 20 18 17 38 38 H 1.09005 * 109.47018 * 60.00332 * 20 18 17 39 39 H 1.08002 * 122.55654 * 0.02622 * 23 22 21 40 40 H 1.08004 * 125.16505 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4516 0.1991 2.2888 7 6 2.4534 -0.1911 3.6014 8 1 2.1627 -1.1970 3.8661 9 6 2.8287 0.7063 4.5918 10 7 3.1825 1.9324 4.2691 11 14 2.8318 0.1738 6.3822 12 1 3.7669 -0.9662 6.5580 13 1 3.2679 1.3085 7.2353 14 1 1.4624 -0.2436 6.7767 15 6 3.2876 -1.5133 0.6943 16 6 2.8146 -1.8804 -0.7343 17 7 2.0300 -0.7123 -1.1850 18 6 1.8074 -0.3585 -2.4663 19 8 1.1435 0.6250 -2.7171 20 6 2.3842 -1.1843 -3.5872 21 8 2.0123 -0.6103 -4.8418 22 6 2.4555 -1.2402 -5.9660 23 6 3.2339 -2.3871 -5.9221 24 6 3.5815 -2.8759 -7.1138 25 16 2.9120 -1.8640 -8.3869 26 6 2.1694 -0.8032 -7.1969 27 17 1.2126 0.5980 -7.5640 28 1 -0.3633 0.5029 0.8962 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3634 0.5247 -0.8836 31 1 2.7130 1.1024 2.0510 32 1 3.4445 2.5595 4.9611 33 1 4.1655 -0.8679 0.6615 34 1 3.4853 -2.4093 1.2828 35 1 3.6716 -2.0356 -1.3896 36 1 2.1903 -2.7736 -0.7094 37 1 3.4709 -1.2015 -3.5037 38 1 1.9988 -2.2020 -3.5243 39 1 3.5350 -2.8500 -4.9939 40 1 4.1828 -3.7589 -7.2727 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987170599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:48 Heat of formation + Delta-G solvation = -16.675395 kcal Electronic energy + Delta-G solvation = -24926.881871 eV Core-core repulsion = 21088.703214 eV Total energy + Delta-G solvation = -3838.178658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.57122 -39.65114 -37.52813 -36.81820 -36.00601 -34.19835 -31.91748 -31.01362 -30.21482 -29.26332 -27.45376 -25.27809 -24.38112 -23.13286 -22.64058 -20.54431 -19.90631 -19.01763 -18.81080 -17.54115 -17.28679 -16.73740 -16.27994 -16.03687 -15.45588 -14.69961 -14.62409 -14.32573 -14.11499 -13.82882 -13.62369 -13.47986 -13.39102 -12.97364 -12.82219 -12.32517 -12.17277 -11.97770 -11.85531 -11.70273 -11.52305 -11.34477 -11.21311 -11.08110 -10.96632 -10.87436 -10.64695 -10.31747 -10.10381 -9.82255 -9.63485 -9.05647 -8.99249 -8.52397 -8.41706 -7.08976 -5.85715 -3.16790 0.39121 0.74351 1.27188 2.00235 2.14804 2.55959 2.60831 3.38503 3.43049 3.44605 3.52896 4.21880 4.39127 4.50716 4.63633 4.71367 4.76815 4.92294 5.11818 5.16249 5.25561 5.34420 5.41125 5.48082 5.60609 5.65126 5.72767 5.86485 6.01916 6.06705 6.22285 6.39190 6.50645 6.56541 6.62205 6.82968 6.84710 7.59282 7.61154 8.19774 8.31377 9.42779 9.96544 10.31106 11.36199 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.002045 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.701142 B =13688.559605 C =14284.866395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.079 0.921 4 C 0.177 3.823 5 H 0.069 0.931 6 N -0.713 5.713 7 C -0.247 4.247 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.095 3.905 17 N -0.607 5.607 18 C 0.529 3.471 19 O -0.516 6.516 20 C 0.046 3.954 21 O -0.268 6.268 22 C 0.122 3.878 23 C -0.187 4.187 24 C -0.179 4.179 25 S 0.173 5.827 26 C -0.204 4.204 27 Cl 0.000 7.000 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.386 0.614 32 H 0.258 0.742 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.155 0.845 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.227 -12.946 -24.636 27.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 H 0.097 0.903 4 C 0.065 3.935 5 H 0.087 0.913 6 N -0.353 5.353 7 C -0.378 4.378 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.576 5.576 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.198 4.198 16 C -0.029 4.029 17 N -0.343 5.343 18 C 0.315 3.685 19 O -0.391 6.391 20 C -0.033 4.033 21 O -0.180 6.180 22 C 0.064 3.936 23 C -0.219 4.219 24 C -0.316 4.316 25 S 0.432 5.568 26 C -0.348 4.348 27 Cl 0.029 6.971 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.221 0.779 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.173 0.827 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.658 -12.132 -26.236 28.913 hybrid contribution 0.280 -0.105 2.543 2.561 sum 0.938 -12.237 -23.693 26.683 Atomic orbital electron populations 1.22054 0.94754 1.01636 1.02881 1.22006 0.94565 0.97014 0.83963 0.90299 1.21231 0.93534 0.91610 0.87098 0.91348 1.42342 1.79388 1.11735 1.01869 1.19157 1.38881 0.96863 0.82850 0.91006 1.24781 1.01799 0.95839 0.98160 1.69658 1.50952 1.04491 1.32531 0.86247 0.77766 0.77242 0.84758 1.21183 1.21664 1.21156 1.23583 1.01545 1.01880 0.92766 1.22515 0.94491 0.88275 0.97574 1.48527 1.52468 1.28931 1.04413 1.19439 0.81469 0.85522 0.82076 1.90755 1.38827 1.26709 1.82841 1.22528 1.00999 0.97517 0.82245 1.86342 1.70801 1.49987 1.10870 1.17684 0.96474 0.92840 0.86555 1.20180 1.03658 0.97671 1.00421 1.25579 1.05809 1.04656 0.95509 1.84340 1.47715 1.18151 1.06564 1.24166 1.13298 1.01971 0.95315 1.98371 1.68706 1.36115 1.93932 0.90971 0.93072 0.91958 0.77933 0.93256 0.90548 0.90370 0.91423 0.91338 0.89021 0.89063 0.82715 0.80452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.10 37.16 0.34 -2.23 16 2 C 0.13 2.20 3.20 -66.96 -0.21 1.98 16 3 H 0.08 1.55 7.72 -51.93 -0.40 1.15 16 4 C 0.18 3.23 3.13 -66.10 -0.21 3.02 16 5 H 0.07 1.24 7.80 -51.93 -0.40 0.84 16 6 N -0.71 -16.82 5.23 -51.65 -0.27 -17.09 16 7 C -0.25 -6.45 9.96 -15.06 -0.15 -6.60 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 11 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C -0.16 -2.34 6.77 -24.58 -0.17 -2.50 16 16 C 0.09 1.08 6.71 -2.35 -0.02 1.06 16 17 N -0.61 -8.80 3.08 -162.76 -0.50 -9.30 16 18 C 0.53 8.04 7.72 -10.99 -0.08 7.95 16 19 O -0.52 -10.11 15.54 -14.35 -0.22 -10.33 16 20 C 0.05 0.50 4.35 36.00 0.16 0.66 16 21 O -0.27 -3.61 9.54 -40.54 -0.39 -4.00 16 22 C 0.12 1.35 6.61 -41.01 -0.27 1.08 16 23 C -0.19 -1.42 9.16 -41.10 -0.38 -1.80 16 24 C -0.18 -1.08 11.22 29.05 0.33 -0.75 16 25 S 0.17 1.28 23.34 -107.50 -2.51 -1.23 16 26 C -0.20 -2.24 7.10 29.14 0.21 -2.03 16 27 Cl 0.00 0.00 29.12 -51.86 -1.51 -1.51 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.09 6.89 -51.93 -0.36 0.73 16 31 H 0.39 9.91 7.56 -40.82 -0.31 9.60 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.59 7.50 -51.93 -0.39 0.20 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.78 7.57 -51.92 -0.39 0.38 16 38 H 0.09 0.73 7.84 -51.93 -0.41 0.32 16 39 H 0.16 0.81 6.91 -52.49 -0.36 0.45 16 40 H 0.18 0.51 8.06 -52.48 -0.42 0.09 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -32.62 365.02 -9.86 -42.47 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.11 Total: 5.96 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.55 Total: -0.51 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.05 Total: -52.93 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.61 Total: -14.33 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.51 Total: -1.23 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.51 Total: -1.51 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.62 -9.86 -42.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987170599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.799 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds