Wall clock time and date at job start Wed Apr 1 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87705 * 2 1 4 4 C 1.54319 * 109.88662 * 121.01683 * 2 1 3 5 5 H 1.09003 * 110.71646 * 23.24879 * 4 2 1 6 6 N 1.46500 * 110.72341 * 260.15231 * 4 2 1 7 7 C 1.36939 * 120.00061 * 154.99521 * 6 4 2 8 8 H 1.07998 * 119.99940 * 0.02562 * 7 6 4 9 9 C 1.38814 * 120.00031 * 180.02562 * 7 6 4 10 10 N 1.31626 * 119.99574 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00042 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47044 * 60.00091 * 11 9 7 13 13 H 1.48503 * 109.47004 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46758 * 299.99665 * 11 9 7 15 15 C 1.55158 * 102.94298 * 141.60794 * 4 2 1 16 16 C 1.54904 * 101.58496 * 324.50135 * 15 4 2 17 17 N 1.47023 * 109.88230 * 238.98837 * 2 1 3 18 18 C 1.34779 * 125.65235 * 61.60280 * 17 2 1 19 19 O 1.21282 * 119.99391 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00233 * 179.97438 * 18 17 2 21 21 O 1.42895 * 109.46964 * 180.02562 * 20 18 17 22 22 C 1.36277 * 117.00125 * 180.02562 * 21 20 18 23 23 C 1.38685 * 122.59341 * 359.97438 * 22 21 20 24 24 C 1.33416 * 114.89336 * 179.97438 * 23 22 21 25 25 S 1.75863 * 109.67248 * 0.02562 * 24 23 22 26 26 C 1.33708 * 122.60003 * 179.71088 * 22 21 20 27 27 Cl 1.73594 * 125.20005 * 359.95780 * 26 22 21 28 28 H 1.09002 * 109.47153 * 299.29616 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.29807 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.29788 * 1 2 3 31 31 H 0.96996 * 119.99667 * 334.99939 * 6 4 2 32 32 H 0.97000 * 119.99608 * 179.97438 * 10 9 7 33 33 H 1.09002 * 111.00062 * 82.57845 * 15 4 2 34 34 H 1.09007 * 111.00472 * 206.42304 * 15 4 2 35 35 H 1.08994 * 110.36903 * 155.84534 * 16 15 4 36 36 H 1.09003 * 110.36693 * 278.05969 * 16 15 4 37 37 H 1.09008 * 109.47238 * 300.00310 * 20 18 17 38 38 H 1.09005 * 109.47018 * 60.00332 * 20 18 17 39 39 H 1.08002 * 122.55654 * 0.02622 * 23 22 21 40 40 H 1.08004 * 125.16505 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4516 0.1991 2.2888 7 6 2.4534 -0.1911 3.6014 8 1 2.1627 -1.1970 3.8661 9 6 2.8287 0.7063 4.5918 10 7 3.1825 1.9324 4.2691 11 14 2.8318 0.1738 6.3822 12 1 3.7669 -0.9662 6.5580 13 1 3.2679 1.3085 7.2353 14 1 1.4624 -0.2436 6.7767 15 6 3.2876 -1.5133 0.6943 16 6 2.8146 -1.8804 -0.7343 17 7 2.0300 -0.7123 -1.1850 18 6 1.8074 -0.3585 -2.4663 19 8 1.1435 0.6250 -2.7171 20 6 2.3842 -1.1843 -3.5872 21 8 2.0123 -0.6103 -4.8418 22 6 2.4555 -1.2402 -5.9660 23 6 3.2339 -2.3871 -5.9221 24 6 3.5815 -2.8759 -7.1138 25 16 2.9120 -1.8640 -8.3869 26 6 2.1694 -0.8032 -7.1969 27 17 1.2126 0.5980 -7.5640 28 1 -0.3633 0.5029 0.8962 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3634 0.5247 -0.8836 31 1 2.7130 1.1024 2.0510 32 1 3.4445 2.5595 4.9611 33 1 4.1655 -0.8679 0.6615 34 1 3.4853 -2.4093 1.2828 35 1 3.6716 -2.0356 -1.3896 36 1 2.1903 -2.7736 -0.7094 37 1 3.4709 -1.2015 -3.5037 38 1 1.9988 -2.2020 -3.5243 39 1 3.5350 -2.8500 -4.9939 40 1 4.1828 -3.7589 -7.2727 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987170599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:48 Heat of formation + Delta-G solvation = -37.474507 kcal Electronic energy + Delta-G solvation = -24927.783788 eV Core-core repulsion = 21088.703214 eV Total energy + Delta-G solvation = -3839.080575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55903 -40.64796 -38.78655 -37.64993 -36.74027 -35.92274 -33.51771 -32.35757 -31.33481 -30.42111 -28.39213 -26.85426 -24.97806 -24.82709 -23.81340 -21.78790 -20.86168 -20.09173 -19.48165 -19.15379 -18.42380 -17.72898 -17.29897 -17.04816 -16.67612 -16.21786 -15.64099 -15.40940 -15.31581 -14.84059 -14.79738 -14.59708 -14.45623 -14.17550 -14.03609 -13.56382 -13.32405 -13.14647 -13.10985 -12.89609 -12.65848 -12.62798 -12.52762 -12.20821 -12.10813 -12.06549 -12.02968 -11.75153 -11.71359 -11.53745 -10.95202 -10.83204 -9.73137 -9.65087 -9.08530 -9.02326 -7.93302 -5.23412 -0.19160 0.12553 0.69924 1.27603 1.47782 1.49817 1.52820 1.54532 1.58135 1.60231 2.56233 2.65331 3.30805 3.41712 3.70374 3.76396 3.81944 3.98867 4.03235 4.10903 4.14013 4.19209 4.37079 4.43853 4.51903 4.64759 4.68598 4.74257 4.89177 4.93252 5.04363 5.07411 5.21047 5.26779 5.29827 5.47217 5.55758 6.06573 6.26787 6.48474 7.05273 7.33130 8.05615 8.28770 9.30032 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.002045 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.701142 B =13688.559605 C =14284.866395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.133 3.867 3 H 0.041 0.959 4 C 0.171 3.829 5 H 0.075 0.925 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.085 0.915 9 C -0.078 4.078 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.273 1.273 13 H -0.302 1.302 14 H -0.278 1.278 15 C -0.149 4.149 16 C 0.100 3.900 17 N -0.605 5.605 18 C 0.521 3.479 19 O -0.574 6.574 20 C 0.053 3.947 21 O -0.305 6.305 22 C 0.112 3.888 23 C -0.199 4.199 24 C -0.155 4.155 25 S 0.190 5.810 26 C -0.242 4.242 27 Cl -0.028 7.028 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.370 0.630 32 H 0.250 0.750 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.186 0.814 40 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.545 -17.462 -25.621 31.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.060 0.940 4 C 0.061 3.939 5 H 0.093 0.907 6 N -0.369 5.369 7 C -0.368 4.368 8 H 0.103 0.897 9 C -0.270 4.270 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.199 1.199 13 H -0.229 1.229 14 H -0.204 1.204 15 C -0.189 4.189 16 C -0.021 4.021 17 N -0.340 5.340 18 C 0.310 3.690 19 O -0.453 6.453 20 C -0.025 4.025 21 O -0.218 6.218 22 C 0.054 3.946 23 C -0.230 4.230 24 C -0.291 4.291 25 S 0.450 5.550 26 C -0.385 4.385 27 Cl 0.001 6.999 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.202 0.798 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.203 0.797 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.982 -16.745 -27.257 32.051 hybrid contribution -0.132 1.227 2.740 3.005 sum 1.850 -15.518 -24.516 29.074 Atomic orbital electron populations 1.21940 0.94474 1.02517 1.01396 1.21670 0.94731 0.95492 0.85293 0.94038 1.21449 0.95310 0.90995 0.86165 0.90726 1.42533 1.79816 1.12047 1.02474 1.19599 1.36238 0.96996 0.83920 0.89691 1.25598 1.03043 0.96066 1.02250 1.69836 1.53488 1.05775 1.33183 0.85206 0.78026 0.76584 0.79898 1.19919 1.22885 1.20423 1.23389 0.98769 1.01374 0.95406 1.22757 0.96104 0.87669 0.95553 1.48547 1.52394 1.29438 1.03617 1.20347 0.80546 0.85169 0.82928 1.90733 1.41466 1.29381 1.83696 1.22634 1.02490 0.97623 0.79757 1.86279 1.71765 1.51590 1.12183 1.18107 0.97042 0.93924 0.85571 1.20394 1.03610 0.96707 1.02306 1.26097 1.04176 1.04618 0.94188 1.84295 1.47065 1.17430 1.06210 1.24618 1.14615 1.02341 0.96959 1.98349 1.69624 1.37814 1.94135 0.92477 0.90874 0.93403 0.79821 0.94168 0.92556 0.88823 0.87256 0.87907 0.85812 0.85150 0.79677 0.76582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 9.10 71.98 0.66 -4.22 16 2 C 0.13 4.60 3.20 45.34 0.15 4.74 16 3 H 0.04 1.74 7.72 -2.39 -0.02 1.72 16 4 C 0.17 6.06 3.13 46.18 0.14 6.21 16 5 H 0.07 2.57 7.80 -2.39 -0.02 2.55 16 6 N -0.73 -34.99 5.23 -317.33 -1.66 -36.65 16 7 C -0.24 -12.33 9.96 84.03 0.84 -11.49 16 8 H 0.09 4.13 7.83 -2.91 -0.02 4.11 16 9 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 10 N -0.97 -58.98 13.06 21.65 0.28 -58.69 16 11 Si 0.97 44.68 29.55 68.60 2.03 46.71 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 13 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 C -0.15 -4.04 6.77 31.98 0.22 -3.83 16 16 C 0.10 1.82 6.71 86.79 0.58 2.40 16 17 N -0.60 -16.34 3.08 -787.25 -2.42 -18.76 16 18 C 0.52 15.16 7.72 87.66 0.68 15.83 16 19 O -0.57 -23.12 15.54 16.00 0.25 -22.88 16 20 C 0.05 0.97 4.35 71.24 0.31 1.28 16 21 O -0.30 -7.81 9.54 -77.68 -0.74 -8.55 16 22 C 0.11 2.24 6.61 21.35 0.14 2.38 16 23 C -0.20 -2.16 9.16 21.28 0.20 -1.96 16 24 C -0.15 -1.15 11.22 66.73 0.75 -0.40 16 25 S 0.19 2.40 23.34 -56.49 -1.32 1.08 16 26 C -0.24 -5.12 7.10 66.79 0.47 -4.65 16 27 Cl -0.03 -0.69 29.12 -2.72 -0.08 -0.76 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.05 1.73 6.89 -2.38 -0.02 1.72 16 31 H 0.37 19.89 7.56 -92.71 -0.70 19.19 16 32 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 34 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.11 1.18 7.50 -2.39 -0.02 1.16 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.12 1.46 7.57 -2.38 -0.02 1.45 16 38 H 0.13 1.36 7.84 -2.38 -0.02 1.35 16 39 H 0.19 0.76 6.91 -2.91 -0.02 0.74 16 40 H 0.22 -0.13 8.06 -2.91 -0.02 -0.15 16 Total: -1.00 -77.42 365.02 2.31 -75.11 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.38 Total: 20.96 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.59 Total: 2.45 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -3.80 Total: -114.11 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.49 Total: -31.43 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.32 Total: 1.08 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.76 kcal Total: -77.42 2.31 -75.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987170599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.634 kcal (2) G-P(sol) polarization free energy of solvation -77.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds