Wall clock time and date at job start Wed Apr 1 2020 02:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.86983 * 2 1 4 4 C 1.54328 * 109.88193 * 121.17616 * 2 1 3 5 5 C 1.55156 * 102.93890 * 141.60966 * 4 2 1 6 6 H 1.09002 * 111.00322 * 206.42410 * 5 4 2 7 7 N 1.46508 * 111.03587 * 82.58651 * 5 4 2 8 8 C 1.36938 * 119.99873 * 158.20273 * 7 5 4 9 9 H 1.08004 * 119.99613 * 359.97438 * 8 7 5 10 10 C 1.38811 * 120.00041 * 179.97438 * 8 7 5 11 11 N 1.31614 * 119.99849 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00058 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47144 * 89.99912 * 12 10 8 14 14 H 1.48497 * 109.47134 * 210.00350 * 12 10 8 15 15 H 1.48501 * 109.47086 * 330.00328 * 12 10 8 16 16 C 1.54907 * 101.58419 * 324.49946 * 5 4 2 17 17 N 1.47020 * 109.87827 * 238.98411 * 2 1 3 18 18 C 1.34778 * 125.64857 * 61.61098 * 17 2 1 19 19 O 1.21277 * 119.99979 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99772 * 180.02562 * 18 17 2 21 21 O 1.42908 * 109.46872 * 179.97438 * 20 18 17 22 22 C 1.36262 * 116.99828 * 180.02562 * 21 20 18 23 23 C 1.38688 * 122.60175 * 0.02562 * 22 21 20 24 24 C 1.33414 * 114.89558 * 180.02562 * 23 22 21 25 25 S 1.75863 * 109.67544 * 359.97438 * 24 23 22 26 26 C 1.33717 * 122.59738 * 179.71372 * 22 21 20 27 27 Cl 1.73592 * 125.19943 * 359.95941 * 26 22 21 28 28 H 1.09002 * 109.46896 * 179.56487 * 1 2 3 29 29 H 1.09009 * 109.47023 * 299.55846 * 1 2 3 30 30 H 1.08997 * 109.47291 * 59.56039 * 1 2 3 31 31 H 1.08998 * 110.72109 * 23.24839 * 4 2 1 32 32 H 1.09001 * 110.71733 * 259.97142 * 4 2 1 33 33 H 0.96992 * 119.99926 * 338.20340 * 7 5 4 34 34 H 0.96997 * 120.00039 * 180.02562 * 11 10 8 35 35 H 1.09003 * 110.37198 * 155.85025 * 16 5 4 36 36 H 1.08998 * 110.36462 * 278.06249 * 16 5 4 37 37 H 1.08997 * 109.47594 * 299.99645 * 20 18 17 38 38 H 1.09000 * 109.46946 * 60.00239 * 20 18 17 39 39 H 1.07999 * 122.55131 * 359.97438 * 23 22 21 40 40 H 1.08001 * 125.16331 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 1.2417 5 6 3.2876 -1.5152 0.6902 6 1 3.4852 -2.4129 1.2762 7 7 4.4680 -0.6484 0.6484 8 6 5.7216 -1.1991 0.6306 9 1 5.8401 -2.2725 0.6478 10 6 6.8400 -0.3779 0.5904 11 7 6.6955 0.9302 0.5700 12 14 8.5501 -1.1291 0.5668 13 1 8.9724 -1.3546 -0.8389 14 1 9.5058 -0.2052 1.2287 15 1 8.5315 -2.4249 1.2919 16 6 2.8145 -1.8783 -0.7395 17 7 2.0300 -0.7124 -1.1849 18 6 1.8073 -0.3585 -2.4662 19 8 1.1437 0.6250 -2.7171 20 6 2.3831 -1.1851 -3.5871 21 8 2.0105 -0.6115 -4.8418 22 6 2.4526 -1.2421 -5.9659 23 6 3.2298 -2.3900 -5.9221 24 6 3.5774 -2.8787 -7.1138 25 16 2.9083 -1.8666 -8.3869 26 6 2.1658 -0.8057 -7.1969 27 17 1.2093 0.5957 -7.5641 28 1 -0.3633 -1.0277 -0.0078 29 1 -0.3633 0.5070 0.8940 30 1 -0.3634 0.5206 -0.8860 31 1 1.3052 -1.4482 1.6162 32 1 2.3530 -0.0488 2.0200 33 1 4.3615 0.3156 0.6334 34 1 7.4770 1.5041 0.5416 35 1 3.6716 -2.0318 -1.3952 36 1 2.1902 -2.7715 -0.7170 37 1 3.4698 -1.2033 -3.5040 38 1 1.9967 -2.2023 -3.5239 39 1 3.5314 -2.8525 -4.9939 40 1 4.1785 -3.7618 -7.2727 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989544537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:15 Heat of formation + Delta-G solvation = -19.012977 kcal Electronic energy + Delta-G solvation = -25477.648952 eV Core-core repulsion = 21639.368930 eV Total energy + Delta-G solvation = -3838.280023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.38328 -39.52064 -37.42561 -36.66590 -35.81909 -34.04682 -31.97443 -31.38503 -29.82377 -28.53418 -27.44574 -25.54336 -24.18174 -23.82441 -22.21316 -20.29727 -19.72231 -18.79456 -18.60274 -17.48099 -17.23736 -16.53852 -16.15982 -15.92500 -15.28675 -14.70157 -14.38721 -14.13348 -14.06025 -13.75336 -13.61739 -13.38515 -13.29519 -13.00222 -12.72074 -12.31086 -12.14881 -11.94567 -11.72399 -11.69794 -11.35121 -11.23758 -11.11163 -11.01513 -10.85007 -10.81306 -10.70411 -10.37881 -10.08271 -9.79846 -9.53822 -9.11156 -8.87694 -8.33068 -8.22698 -7.12327 -5.89431 -3.20827 0.57525 0.91679 1.44821 2.17029 2.34863 2.75984 2.83810 3.34396 3.39653 3.42470 3.75686 4.43164 4.46452 4.60392 4.86310 4.94600 5.01770 5.09572 5.13757 5.27513 5.33260 5.44404 5.51997 5.55507 5.62092 5.72885 5.82423 5.85127 5.91941 6.09742 6.15520 6.35167 6.37025 6.50312 6.62614 6.68939 7.02339 7.56459 7.79979 8.27479 8.39921 9.39384 9.94269 10.28637 11.32264 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.009941 B = 0.003288 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.040982 B = 8514.798610 C =10343.876878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.076 0.924 4 C -0.138 4.138 5 C 0.170 3.830 6 H 0.074 0.926 7 N -0.712 5.712 8 C -0.252 4.252 9 H 0.073 0.927 10 C -0.006 4.006 11 N -0.926 5.926 12 Si 0.907 3.093 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.063 3.937 17 N -0.596 5.596 18 C 0.534 3.466 19 O -0.527 6.527 20 C 0.046 3.954 21 O -0.268 6.268 22 C 0.126 3.874 23 C -0.185 4.185 24 C -0.178 4.178 25 S 0.166 5.834 26 C -0.205 4.205 27 Cl -0.003 7.003 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.157 0.843 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 -9.600 -12.236 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.094 0.906 4 C -0.177 4.177 5 C 0.057 3.943 6 H 0.092 0.908 7 N -0.352 5.352 8 C -0.383 4.383 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.573 5.573 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.063 4.063 17 N -0.330 5.330 18 C 0.320 3.680 19 O -0.403 6.403 20 C -0.033 4.033 21 O -0.181 6.181 22 C 0.068 3.932 23 C -0.217 4.217 24 C -0.314 4.314 25 S 0.426 5.574 26 C -0.349 4.349 27 Cl 0.026 6.974 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.174 0.826 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.770 -8.834 -14.005 19.753 hybrid contribution 1.115 -0.125 1.503 1.876 sum -9.655 -8.959 -12.502 18.160 Atomic orbital electron populations 1.22148 0.95322 1.01785 1.02611 1.21499 0.93612 0.96785 0.84244 0.90635 1.23066 0.98187 1.00047 0.96371 1.21314 0.87061 0.94522 0.91401 0.90827 1.42355 1.00065 1.05247 1.87531 1.19212 0.83168 0.91791 1.44109 0.90933 1.24776 0.97978 0.95303 1.02289 1.69661 1.29192 1.02031 1.56409 0.86215 0.84463 0.78024 0.77576 1.21659 1.21691 1.20624 1.23489 0.94310 0.86886 1.01593 1.48262 1.51913 1.28927 1.03940 1.19377 0.81038 0.85313 0.82226 1.90711 1.39592 1.26903 1.83099 1.22533 1.01611 0.97175 0.81957 1.86314 1.70702 1.50089 1.10966 1.17692 0.96212 0.92701 0.86594 1.20230 1.03374 0.97605 1.00534 1.25562 1.05765 1.04657 0.95423 1.84250 1.48058 1.18379 1.06743 1.24102 1.13585 1.01910 0.95261 1.98357 1.68802 1.36340 1.93944 0.92838 0.91884 0.91532 0.90622 0.89639 0.77950 0.93271 0.90318 0.92386 0.88480 0.89296 0.82575 0.80466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.10 37.16 0.34 -1.85 16 2 C 0.14 2.22 3.45 -66.95 -0.23 1.99 16 3 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.14 -1.99 6.06 -24.90 -0.15 -2.14 16 5 C 0.17 2.88 3.70 -65.78 -0.24 2.64 16 6 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 7 N -0.71 -16.19 5.25 -51.35 -0.27 -16.45 16 8 C -0.25 -6.39 9.97 -15.06 -0.15 -6.54 16 9 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 10 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 11 N -0.93 -26.93 13.06 55.49 0.72 -26.20 16 12 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 16 C 0.06 0.95 6.38 -2.53 -0.02 0.93 16 17 N -0.60 -9.70 3.06 -163.02 -0.50 -10.20 16 18 C 0.53 9.40 7.72 -10.99 -0.08 9.31 16 19 O -0.53 -11.11 15.54 -14.35 -0.22 -11.33 16 20 C 0.05 0.66 4.34 36.00 0.16 0.82 16 21 O -0.27 -4.34 9.54 -40.49 -0.39 -4.73 16 22 C 0.13 1.72 6.61 -41.00 -0.27 1.45 16 23 C -0.19 -1.96 9.16 -41.10 -0.38 -2.34 16 24 C -0.18 -1.53 11.22 29.05 0.33 -1.20 16 25 S 0.17 1.58 23.34 -107.50 -2.51 -0.93 16 26 C -0.21 -2.69 7.10 29.15 0.21 -2.48 16 27 Cl 0.00 -0.04 29.12 -51.86 -1.51 -1.55 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.07 1.05 6.88 -51.93 -0.36 0.69 16 31 H 0.08 0.89 7.85 -51.93 -0.41 0.49 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.39 9.73 7.84 -40.82 -0.32 9.41 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.08 1.25 7.48 -51.93 -0.39 0.86 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.34 7.55 -51.93 -0.39 0.94 16 38 H 0.09 0.99 7.84 -51.93 -0.41 0.58 16 39 H 0.16 1.37 6.91 -52.49 -0.36 1.01 16 40 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -32.07 365.49 -9.92 -41.99 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.14 Total: 7.41 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -0.59 Total: 0.32 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.04 Total: -52.85 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.61 Total: -16.06 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.51 Total: -0.93 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.51 Total: -1.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.07 -9.92 -41.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989544537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.979 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds