Wall clock time and date at job start Wed Apr 1 2020 02:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.86983 * 2 1 4 4 C 1.54328 * 109.88193 * 121.17616 * 2 1 3 5 5 C 1.55156 * 102.93890 * 141.60966 * 4 2 1 6 6 H 1.09002 * 111.00322 * 206.42410 * 5 4 2 7 7 N 1.46508 * 111.03587 * 82.58651 * 5 4 2 8 8 C 1.36938 * 119.99873 * 158.20273 * 7 5 4 9 9 H 1.08004 * 119.99613 * 359.97438 * 8 7 5 10 10 C 1.38811 * 120.00041 * 179.97438 * 8 7 5 11 11 N 1.31614 * 119.99849 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00058 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47144 * 89.99912 * 12 10 8 14 14 H 1.48497 * 109.47134 * 210.00350 * 12 10 8 15 15 H 1.48501 * 109.47086 * 330.00328 * 12 10 8 16 16 C 1.54907 * 101.58419 * 324.49946 * 5 4 2 17 17 N 1.47020 * 109.87827 * 238.98411 * 2 1 3 18 18 C 1.34778 * 125.64857 * 61.61098 * 17 2 1 19 19 O 1.21277 * 119.99979 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99772 * 180.02562 * 18 17 2 21 21 O 1.42908 * 109.46872 * 179.97438 * 20 18 17 22 22 C 1.36262 * 116.99828 * 180.02562 * 21 20 18 23 23 C 1.38688 * 122.60175 * 0.02562 * 22 21 20 24 24 C 1.33414 * 114.89558 * 180.02562 * 23 22 21 25 25 S 1.75863 * 109.67544 * 359.97438 * 24 23 22 26 26 C 1.33717 * 122.59738 * 179.71372 * 22 21 20 27 27 Cl 1.73592 * 125.19943 * 359.95941 * 26 22 21 28 28 H 1.09002 * 109.46896 * 179.56487 * 1 2 3 29 29 H 1.09009 * 109.47023 * 299.55846 * 1 2 3 30 30 H 1.08997 * 109.47291 * 59.56039 * 1 2 3 31 31 H 1.08998 * 110.72109 * 23.24839 * 4 2 1 32 32 H 1.09001 * 110.71733 * 259.97142 * 4 2 1 33 33 H 0.96992 * 119.99926 * 338.20340 * 7 5 4 34 34 H 0.96997 * 120.00039 * 180.02562 * 11 10 8 35 35 H 1.09003 * 110.37198 * 155.85025 * 16 5 4 36 36 H 1.08998 * 110.36462 * 278.06249 * 16 5 4 37 37 H 1.08997 * 109.47594 * 299.99645 * 20 18 17 38 38 H 1.09000 * 109.46946 * 60.00239 * 20 18 17 39 39 H 1.07999 * 122.55131 * 359.97438 * 23 22 21 40 40 H 1.08001 * 125.16331 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 1.2417 5 6 3.2876 -1.5152 0.6902 6 1 3.4852 -2.4129 1.2762 7 7 4.4680 -0.6484 0.6484 8 6 5.7216 -1.1991 0.6306 9 1 5.8401 -2.2725 0.6478 10 6 6.8400 -0.3779 0.5904 11 7 6.6955 0.9302 0.5700 12 14 8.5501 -1.1291 0.5668 13 1 8.9724 -1.3546 -0.8389 14 1 9.5058 -0.2052 1.2287 15 1 8.5315 -2.4249 1.2919 16 6 2.8145 -1.8783 -0.7395 17 7 2.0300 -0.7124 -1.1849 18 6 1.8073 -0.3585 -2.4662 19 8 1.1437 0.6250 -2.7171 20 6 2.3831 -1.1851 -3.5871 21 8 2.0105 -0.6115 -4.8418 22 6 2.4526 -1.2421 -5.9659 23 6 3.2298 -2.3900 -5.9221 24 6 3.5774 -2.8787 -7.1138 25 16 2.9083 -1.8666 -8.3869 26 6 2.1658 -0.8057 -7.1969 27 17 1.2093 0.5957 -7.5641 28 1 -0.3633 -1.0277 -0.0078 29 1 -0.3633 0.5070 0.8940 30 1 -0.3634 0.5206 -0.8860 31 1 1.3052 -1.4482 1.6162 32 1 2.3530 -0.0488 2.0200 33 1 4.3615 0.3156 0.6334 34 1 7.4770 1.5041 0.5416 35 1 3.6716 -2.0318 -1.3952 36 1 2.1902 -2.7715 -0.7170 37 1 3.4698 -1.2033 -3.5040 38 1 1.9967 -2.2023 -3.5239 39 1 3.5314 -2.8525 -4.9939 40 1 4.1785 -3.7618 -7.2727 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989544537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:14 Heat of formation + Delta-G solvation = -38.854615 kcal Electronic energy + Delta-G solvation = -25478.509350 eV Core-core repulsion = 21639.368930 eV Total energy + Delta-G solvation = -3839.140421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.55481 -40.65787 -38.76787 -37.68059 -36.78381 -35.78093 -33.33374 -32.98606 -30.76127 -30.11501 -28.53022 -26.73340 -25.69207 -25.00363 -23.49477 -21.57992 -20.76134 -19.98824 -19.51363 -19.24330 -18.44109 -17.74343 -17.35309 -17.10807 -16.52483 -16.24427 -15.64959 -15.46580 -15.22218 -14.91314 -14.82686 -14.59955 -14.49463 -14.15170 -14.07170 -13.49932 -13.24519 -13.16093 -13.14503 -12.87121 -12.69127 -12.67776 -12.26916 -12.20085 -12.12835 -12.10359 -12.01281 -11.78654 -11.61925 -11.47845 -11.04462 -10.83377 -9.70384 -9.68083 -9.11237 -8.96975 -7.91486 -5.20713 -0.23766 0.08897 0.65019 1.24492 1.46609 1.50439 1.50864 1.51540 1.59997 1.66622 2.58553 2.65011 3.33709 3.41601 3.69133 3.83576 3.87976 3.93875 3.98839 4.04603 4.09251 4.14236 4.37871 4.48586 4.63022 4.69935 4.77125 4.80377 4.84962 4.95131 5.02871 5.11312 5.19399 5.23523 5.35702 5.46875 5.58454 6.01993 6.29085 6.50982 7.07366 7.35903 8.11251 8.32818 9.32018 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.009941 B = 0.003288 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.040982 B = 8514.798610 C =10343.876878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 H 0.038 0.962 4 C -0.122 4.122 5 C 0.157 3.843 6 H 0.093 0.907 7 N -0.728 5.728 8 C -0.233 4.233 9 H 0.090 0.910 10 C -0.076 4.076 11 N -0.973 5.973 12 Si 0.968 3.032 13 H -0.290 1.290 14 H -0.306 1.306 15 H -0.262 1.262 16 C 0.071 3.929 17 N -0.595 5.595 18 C 0.522 3.478 19 O -0.574 6.574 20 C 0.054 3.946 21 O -0.301 6.301 22 C 0.108 3.892 23 C -0.204 4.204 24 C -0.155 4.155 25 S 0.203 5.797 26 C -0.239 4.239 27 Cl -0.023 7.023 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.369 0.631 34 H 0.247 0.753 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.175 0.825 40 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.477 -13.633 -12.366 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.032 3.968 3 H 0.056 0.944 4 C -0.160 4.160 5 C 0.047 3.953 6 H 0.110 0.890 7 N -0.367 5.367 8 C -0.365 4.365 9 H 0.108 0.892 10 C -0.268 4.268 11 N -0.624 5.624 12 Si 0.798 3.202 13 H -0.218 1.218 14 H -0.233 1.233 15 H -0.187 1.187 16 C -0.053 4.053 17 N -0.329 5.329 18 C 0.310 3.690 19 O -0.454 6.454 20 C -0.025 4.025 21 O -0.215 6.215 22 C 0.050 3.950 23 C -0.235 4.235 24 C -0.291 4.291 25 S 0.463 5.537 26 C -0.382 4.382 27 Cl 0.005 6.995 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.200 0.800 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.144 0.856 39 H 0.192 0.808 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -10.864 -12.958 -14.126 22.034 hybrid contribution 1.067 1.054 1.523 2.138 sum -9.797 -11.904 -12.603 19.912 Atomic orbital electron populations 1.22037 0.93431 1.02934 1.02237 1.21563 0.95094 0.95238 0.84921 0.94412 1.22998 0.97811 1.00058 0.95177 1.21672 0.86006 0.94533 0.93128 0.88965 1.42593 1.01243 1.05075 1.87755 1.19699 0.84099 0.92433 1.40270 0.89239 1.25537 1.01604 0.95619 1.04063 1.69839 1.29264 1.03514 1.59762 0.85221 0.80194 0.77549 0.77281 1.21768 1.23304 1.18650 1.23466 0.94803 0.87709 0.99365 1.48391 1.51488 1.29221 1.03807 1.20069 0.80524 0.85097 0.83269 1.90683 1.41848 1.29002 1.83872 1.22541 1.01513 0.97919 0.80481 1.86256 1.71547 1.51598 1.12058 1.18127 0.97169 0.93901 0.85823 1.20360 1.03919 0.97069 1.02170 1.26080 1.04066 1.04721 0.94233 1.84131 1.46860 1.17059 1.05679 1.24581 1.14539 1.02337 0.96722 1.98338 1.69474 1.37616 1.94064 0.90730 0.89979 0.94256 0.86602 0.90698 0.80025 0.94426 0.91071 0.87773 0.88116 0.85567 0.80770 0.76629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.10 71.98 0.66 -3.20 16 2 C 0.13 4.16 3.45 45.34 0.16 4.32 16 3 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 4 C -0.12 -3.23 6.06 31.78 0.19 -3.04 16 5 C 0.16 4.91 3.70 46.38 0.17 5.08 16 6 H 0.09 2.61 8.11 -2.39 -0.02 2.59 16 7 N -0.73 -32.68 5.25 -316.36 -1.66 -34.34 16 8 C -0.23 -11.57 9.97 84.03 0.84 -10.73 16 9 H 0.09 4.06 7.83 -2.91 -0.02 4.04 16 10 C -0.08 -4.12 5.50 84.86 0.47 -3.66 16 11 N -0.97 -58.30 13.06 21.65 0.28 -58.02 16 12 Si 0.97 43.59 29.55 68.60 2.03 45.62 16 13 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.31 -14.38 7.11 99.48 0.71 -13.67 16 15 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 16 C 0.07 1.90 6.38 86.85 0.55 2.46 16 17 N -0.60 -18.75 3.06 -788.06 -2.42 -21.16 16 18 C 0.52 18.45 7.72 87.66 0.68 19.13 16 19 O -0.57 -25.28 15.54 16.02 0.25 -25.03 16 20 C 0.05 1.49 4.34 71.24 0.31 1.79 16 21 O -0.30 -9.84 9.54 -77.51 -0.74 -10.58 16 22 C 0.11 2.88 6.61 21.35 0.14 3.02 16 23 C -0.20 -3.81 9.16 21.28 0.20 -3.61 16 24 C -0.15 -2.12 11.22 66.73 0.75 -1.37 16 25 S 0.20 3.45 23.34 -56.49 -1.32 2.13 16 26 C -0.24 -6.19 7.10 66.79 0.47 -5.72 16 27 Cl -0.02 -0.66 29.12 -2.72 -0.08 -0.74 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.04 1.24 6.88 -2.39 -0.02 1.23 16 31 H 0.12 2.19 7.85 -2.39 -0.02 2.17 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.37 19.02 7.84 -92.71 -0.73 18.29 16 34 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 35 H 0.07 2.05 7.48 -2.39 -0.02 2.03 16 36 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.10 2.67 7.55 -2.39 -0.02 2.65 16 38 H 0.13 2.45 7.84 -2.39 -0.02 2.43 16 39 H 0.18 2.49 6.91 -2.91 -0.02 2.47 16 40 H 0.22 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -74.18 365.49 2.28 -71.91 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.35 Total: 25.74 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 5.58 Total: 4.48 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -3.79 Total: -113.52 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.49 Total: -35.62 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.32 Total: 2.13 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -74.18 2.28 -71.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989544537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.051 kcal (2) G-P(sol) polarization free energy of solvation -74.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds