Wall clock time and date at job start Wed Apr 1 2020 03:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99641 * 2 1 4 4 H 1.48497 * 109.46907 * 270.00329 * 3 2 1 5 5 H 1.48494 * 109.47141 * 30.00181 * 3 2 1 6 6 H 1.48496 * 109.46996 * 150.00488 * 3 2 1 7 7 C 1.38805 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00135 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99938 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00084 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49880 * 324.94224 * 10 9 7 12 12 C 1.53039 * 109.52617 * 204.86038 * 10 9 7 13 13 C 1.53045 * 109.53926 * 178.66882 * 12 10 9 14 14 C 1.52765 * 109.38350 * 61.23994 * 13 12 10 15 15 N 1.46923 * 109.00694 * 305.59158 * 14 13 12 16 16 C 1.34780 * 120.62967 * 233.58537 * 15 14 13 17 17 O 1.21576 * 120.00281 * 179.71832 * 16 15 14 18 18 C 1.47624 * 119.99643 * 359.71550 * 16 15 14 19 19 C 1.39881 * 120.16914 * 270.00166 * 18 16 15 20 20 F 1.35102 * 120.07599 * 359.97438 * 19 18 16 21 21 C 1.38222 * 119.84552 * 180.02562 * 19 18 16 22 22 C 1.38284 * 120.17640 * 0.02562 * 21 19 18 23 23 C 1.38521 * 120.34177 * 0.02562 * 22 21 19 24 24 F 1.35104 * 119.92578 * 179.97438 * 23 22 21 25 25 C 1.38278 * 120.15280 * 0.22822 * 23 22 21 26 26 Cl 1.73609 * 120.09299 * 179.75239 * 25 23 22 27 27 C 1.46924 * 118.74257 * 53.30411 * 15 14 13 28 28 H 0.96998 * 120.00077 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00318 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.46042 * 298.68964 * 12 10 9 31 31 H 1.09003 * 109.46031 * 58.65032 * 12 10 9 32 32 H 1.09002 * 109.49962 * 181.31661 * 13 12 10 33 33 H 1.08998 * 109.49490 * 301.37969 * 13 12 10 34 34 H 1.08990 * 109.50895 * 185.70681 * 14 13 12 35 35 H 1.09004 * 109.43123 * 65.42389 * 14 13 12 36 36 H 1.08002 * 119.91098 * 179.97438 * 21 19 18 37 37 H 1.08008 * 119.82945 * 179.97438 * 22 21 19 38 38 H 1.09001 * 109.58261 * 66.43627 * 27 15 14 39 39 H 1.09003 * 109.58833 * 186.85512 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 1 3.5659 -3.2062 0.5895 12 6 5.5015 -2.2591 0.6047 13 6 6.2548 -3.5910 0.6353 14 6 6.4230 -4.1113 -0.7911 15 7 5.1040 -4.1782 -1.4347 16 6 4.6753 -5.3218 -2.0048 17 8 3.5796 -5.3659 -2.5297 18 6 5.5364 -6.5209 -1.9918 19 6 6.4366 -6.7512 -3.0374 20 9 6.5205 -5.8766 -4.0636 21 6 7.2392 -7.8764 -3.0187 22 6 7.1538 -8.7738 -1.9701 23 6 6.2643 -8.5536 -0.9313 24 9 6.1875 -9.4362 0.0887 25 6 5.4510 -7.4353 -0.9385 26 17 4.3322 -7.1643 0.3610 27 6 4.2584 -2.9767 -1.4396 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3620 -0.0007 30 1 6.0562 -1.5421 -0.0004 31 1 5.4004 -1.8758 1.6201 32 1 7.2353 -3.4442 1.0883 33 1 5.6887 -4.3158 1.2204 34 1 6.8681 -5.1058 -0.7657 35 1 7.0685 -3.4339 -1.3504 36 1 7.9343 -8.0555 -3.8257 37 1 7.7834 -9.6514 -1.9614 38 1 4.7237 -2.2050 -2.0529 39 1 3.2758 -3.2230 -1.8420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000279036.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:55 Heat of formation + Delta-G solvation = -81.345980 kcal Electronic energy + Delta-G solvation = -28224.958250 eV Core-core repulsion = 23830.134878 eV Total energy + Delta-G solvation = -4394.823371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.45674 -49.43415 -40.52912 -38.88602 -37.39415 -36.94219 -34.68955 -32.56466 -31.83713 -31.34530 -30.58682 -28.82584 -25.96857 -24.25735 -23.72897 -23.34862 -21.80229 -20.76641 -19.54600 -18.32311 -18.00345 -17.88488 -17.55978 -16.97957 -16.36927 -15.96605 -15.78333 -15.31954 -15.07757 -14.89158 -14.66831 -14.34944 -14.21332 -13.89478 -13.71928 -13.29566 -13.24325 -13.11789 -12.75561 -12.64876 -12.44281 -12.16898 -11.82918 -11.70320 -11.40568 -11.26538 -10.95204 -10.76917 -10.70676 -10.31487 -10.07987 -9.94575 -9.60097 -9.53369 -9.15874 -9.12759 -8.50725 -7.32440 -5.78255 -3.16133 0.12563 0.22548 1.47731 2.38481 2.53275 2.88717 3.35517 3.38036 3.43965 3.50578 3.53828 3.90721 4.16844 4.28452 4.56641 4.60087 4.71636 4.95083 5.03249 5.10362 5.13569 5.23795 5.31219 5.34500 5.40668 5.44029 5.67434 5.74262 5.84280 5.96240 5.97699 6.03333 6.19768 6.32531 6.53013 6.66911 6.83932 7.39235 7.96679 8.07645 8.40187 9.17119 9.88573 10.06737 11.39646 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.003300 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.482923 B = 8483.659030 C = 8830.145408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.741 5.741 10 C 0.174 3.826 11 H 0.061 0.939 12 C -0.129 4.129 13 C -0.129 4.129 14 C 0.107 3.893 15 N -0.590 5.590 16 C 0.559 3.441 17 O -0.509 6.509 18 C -0.115 4.115 19 C 0.133 3.867 20 F -0.116 7.116 21 C -0.120 4.120 22 C -0.102 4.102 23 C 0.101 3.899 24 F -0.118 7.118 25 C -0.027 4.027 26 Cl -0.010 7.010 27 C 0.093 3.907 28 H 0.260 0.740 29 H 0.363 0.637 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.065 0.935 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.974 -18.215 -2.697 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.383 5.383 10 C 0.063 3.937 11 H 0.079 0.921 12 C -0.168 4.168 13 C -0.168 4.168 14 C -0.017 4.017 15 N -0.323 5.323 16 C 0.343 3.657 17 O -0.384 6.384 18 C -0.120 4.120 19 C 0.112 3.888 20 F -0.094 7.094 21 C -0.139 4.139 22 C -0.121 4.121 23 C 0.081 3.919 24 F -0.096 7.096 25 C -0.055 4.055 26 Cl 0.019 6.981 27 C -0.031 4.031 28 H 0.070 0.930 29 H 0.196 0.804 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.177 0.823 37 H 0.178 0.822 38 H 0.084 0.916 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 20.977 -18.215 -2.838 27.927 hybrid contribution 0.481 1.227 0.071 1.320 sum 21.458 -16.988 -2.768 27.508 Atomic orbital electron populations 1.69707 1.05133 1.25884 1.56957 1.24681 0.95212 0.97193 1.01703 0.86563 0.79198 0.85018 0.77802 1.21014 1.21699 1.20292 1.19097 0.80336 0.94894 1.43595 0.89032 1.42714 1.04158 1.01663 1.89765 1.20451 0.91048 0.89594 0.92637 0.92124 1.21867 0.96626 0.96307 1.01956 1.21797 1.01064 0.98293 0.95651 1.21670 0.84218 1.01504 0.94259 1.48170 1.18194 1.11209 1.54706 1.17698 0.85952 0.82258 0.79777 1.90880 1.20074 1.83207 1.44273 1.19840 0.99305 0.98193 0.94680 1.17446 0.96380 0.89544 0.85424 1.91606 1.94899 1.67324 1.55604 1.21054 1.00132 0.92541 1.00197 1.21082 0.98175 1.00920 0.91916 1.17194 0.98395 0.88333 0.88010 1.91590 1.95231 1.66131 1.56662 1.20759 0.96384 0.95373 0.93016 1.98473 1.58613 1.95759 1.45212 1.22833 0.95615 0.83692 1.00975 0.92974 0.80411 0.92008 0.91142 0.90653 0.91207 0.90897 0.90907 0.82296 0.82212 0.91630 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 21.86 27.74 -169.99 -4.71 17.14 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 7 C -0.25 -7.02 10.41 -15.06 -0.16 -7.18 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 N -0.74 -17.13 4.93 -53.31 -0.26 -17.39 16 10 C 0.17 3.27 2.92 -67.81 -0.20 3.07 16 11 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 12 C -0.13 -1.85 5.36 -26.69 -0.14 -1.99 16 13 C -0.13 -1.45 6.07 -26.83 -0.16 -1.61 16 14 C 0.11 1.20 6.31 -3.93 -0.02 1.17 16 15 N -0.59 -8.97 2.98 -174.23 -0.52 -9.49 16 16 C 0.56 9.16 5.83 -12.43 -0.07 9.09 16 17 O -0.51 -10.54 16.52 5.30 0.09 -10.45 16 18 C -0.11 -1.45 3.64 -104.89 -0.38 -1.83 16 19 C 0.13 1.35 7.29 -38.97 -0.28 1.07 16 20 F -0.12 -1.36 16.83 2.25 0.04 -1.32 16 21 C -0.12 -0.76 10.01 -39.57 -0.40 -1.16 16 22 C -0.10 -0.60 10.01 -39.46 -0.39 -1.00 16 23 C 0.10 0.90 7.26 -39.46 -0.29 0.62 16 24 F -0.12 -1.11 16.83 2.25 0.04 -1.07 16 25 C -0.03 -0.31 6.22 -39.00 -0.24 -0.55 16 26 Cl -0.01 -0.13 27.70 -51.86 -1.44 -1.57 16 27 C 0.09 1.69 6.02 -3.71 -0.02 1.67 16 28 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 29 H 0.36 8.13 5.66 -40.82 -0.23 7.90 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.70 6.23 -51.93 -0.32 0.38 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.16 0.52 8.06 -52.49 -0.42 0.09 16 37 H 0.16 0.43 8.06 -52.48 -0.42 0.00 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.10 2.14 7.00 -51.93 -0.36 1.78 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -34.00 349.36 -7.90 -41.90 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.31 Total: 4.06 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.86 Total: 1.51 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.01 Total: -55.46 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.08 Total: -2.39 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.44 Total: -1.57 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.00 -7.90 -41.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000279036.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.447 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds