Wall clock time and date at job start Wed Apr 1 2020 03:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99641 * 2 1 4 4 H 1.48497 * 109.46907 * 270.00329 * 3 2 1 5 5 H 1.48494 * 109.47141 * 30.00181 * 3 2 1 6 6 H 1.48496 * 109.46996 * 150.00488 * 3 2 1 7 7 C 1.38805 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00135 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99938 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00084 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49880 * 324.94224 * 10 9 7 12 12 C 1.53039 * 109.52617 * 204.86038 * 10 9 7 13 13 C 1.53045 * 109.53926 * 178.66882 * 12 10 9 14 14 C 1.52765 * 109.38350 * 61.23994 * 13 12 10 15 15 N 1.46923 * 109.00694 * 305.59158 * 14 13 12 16 16 C 1.34780 * 120.62967 * 233.58537 * 15 14 13 17 17 O 1.21576 * 120.00281 * 179.71832 * 16 15 14 18 18 C 1.47624 * 119.99643 * 359.71550 * 16 15 14 19 19 C 1.39881 * 120.16914 * 270.00166 * 18 16 15 20 20 F 1.35102 * 120.07599 * 359.97438 * 19 18 16 21 21 C 1.38222 * 119.84552 * 180.02562 * 19 18 16 22 22 C 1.38284 * 120.17640 * 0.02562 * 21 19 18 23 23 C 1.38521 * 120.34177 * 0.02562 * 22 21 19 24 24 F 1.35104 * 119.92578 * 179.97438 * 23 22 21 25 25 C 1.38278 * 120.15280 * 0.22822 * 23 22 21 26 26 Cl 1.73609 * 120.09299 * 179.75239 * 25 23 22 27 27 C 1.46924 * 118.74257 * 53.30411 * 15 14 13 28 28 H 0.96998 * 120.00077 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00318 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.46042 * 298.68964 * 12 10 9 31 31 H 1.09003 * 109.46031 * 58.65032 * 12 10 9 32 32 H 1.09002 * 109.49962 * 181.31661 * 13 12 10 33 33 H 1.08998 * 109.49490 * 301.37969 * 13 12 10 34 34 H 1.08990 * 109.50895 * 185.70681 * 14 13 12 35 35 H 1.09004 * 109.43123 * 65.42389 * 14 13 12 36 36 H 1.08002 * 119.91098 * 179.97438 * 21 19 18 37 37 H 1.08008 * 119.82945 * 179.97438 * 22 21 19 38 38 H 1.09001 * 109.58261 * 66.43627 * 27 15 14 39 39 H 1.09003 * 109.58833 * 186.85512 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 1 3.5659 -3.2062 0.5895 12 6 5.5015 -2.2591 0.6047 13 6 6.2548 -3.5910 0.6353 14 6 6.4230 -4.1113 -0.7911 15 7 5.1040 -4.1782 -1.4347 16 6 4.6753 -5.3218 -2.0048 17 8 3.5796 -5.3659 -2.5297 18 6 5.5364 -6.5209 -1.9918 19 6 6.4366 -6.7512 -3.0374 20 9 6.5205 -5.8766 -4.0636 21 6 7.2392 -7.8764 -3.0187 22 6 7.1538 -8.7738 -1.9701 23 6 6.2643 -8.5536 -0.9313 24 9 6.1875 -9.4362 0.0887 25 6 5.4510 -7.4353 -0.9385 26 17 4.3322 -7.1643 0.3610 27 6 4.2584 -2.9767 -1.4396 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3620 -0.0007 30 1 6.0562 -1.5421 -0.0004 31 1 5.4004 -1.8758 1.6201 32 1 7.2353 -3.4442 1.0883 33 1 5.6887 -4.3158 1.2204 34 1 6.8681 -5.1058 -0.7657 35 1 7.0685 -3.4339 -1.3504 36 1 7.9343 -8.0555 -3.8257 37 1 7.7834 -9.6514 -1.9614 38 1 4.7237 -2.2050 -2.0529 39 1 3.2758 -3.2230 -1.8420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000279036.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:54 Heat of formation + Delta-G solvation = -104.266446 kcal Electronic energy + Delta-G solvation = -28225.952156 eV Core-core repulsion = 23830.134878 eV Total energy + Delta-G solvation = -4395.817277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.24977 -50.15951 -41.66789 -39.81063 -38.74623 -37.83743 -36.40127 -34.14028 -33.02911 -32.71445 -31.33158 -30.43232 -27.10117 -25.74757 -24.96575 -24.10277 -23.21350 -22.12391 -20.77980 -19.60345 -19.21945 -18.78622 -18.72842 -18.01403 -17.21718 -17.04647 -16.71589 -16.59251 -16.29488 -16.07855 -15.74589 -15.59231 -15.44360 -15.19585 -14.87694 -14.56805 -14.31815 -14.14352 -14.02962 -13.93447 -13.84847 -13.38733 -13.02845 -12.91411 -12.62439 -12.58746 -12.36374 -12.11904 -11.99502 -11.92108 -11.83813 -11.43298 -11.35412 -11.10779 -10.34666 -9.96760 -9.86486 -9.32705 -8.06011 -5.42947 -0.60082 -0.47139 0.62330 1.16784 1.35755 1.41608 1.48642 1.68822 1.93226 2.46047 2.73318 2.79559 3.08849 3.24574 3.46227 3.48545 3.61612 3.83393 3.94650 3.97233 3.99590 4.19227 4.29509 4.42874 4.45306 4.50388 4.61808 4.68770 4.78440 4.80119 4.82308 4.94638 5.06891 5.30049 5.33146 5.36527 5.39616 5.71673 6.15999 6.17977 6.82384 7.02801 7.74378 7.97517 9.15818 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.003300 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.482923 B = 8483.659030 C = 8830.145408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.063 4.063 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.242 1.242 7 C -0.240 4.240 8 H 0.042 0.958 9 N -0.741 5.741 10 C 0.171 3.829 11 H 0.028 0.972 12 C -0.120 4.120 13 C -0.122 4.122 14 C 0.100 3.900 15 N -0.588 5.588 16 C 0.555 3.445 17 O -0.572 6.572 18 C -0.137 4.137 19 C 0.123 3.877 20 F -0.129 7.129 21 C -0.091 4.091 22 C -0.071 4.071 23 C 0.101 3.899 24 F -0.121 7.121 25 C -0.041 4.041 26 Cl -0.042 7.042 27 C 0.105 3.895 28 H 0.259 0.741 29 H 0.372 0.628 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.204 0.796 37 H 0.208 0.792 38 H 0.077 0.923 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.744 -19.135 -3.050 33.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.790 3.210 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.166 1.166 7 C -0.371 4.371 8 H 0.061 0.939 9 N -0.385 5.385 10 C 0.062 3.938 11 H 0.046 0.954 12 C -0.158 4.158 13 C -0.160 4.160 14 C -0.020 4.020 15 N -0.319 5.319 16 C 0.341 3.659 17 O -0.451 6.451 18 C -0.142 4.142 19 C 0.102 3.898 20 F -0.107 7.107 21 C -0.110 4.110 22 C -0.089 4.089 23 C 0.081 3.919 24 F -0.099 7.099 25 C -0.070 4.070 26 Cl -0.013 7.013 27 C -0.020 4.020 28 H 0.068 0.932 29 H 0.206 0.794 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.137 0.863 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.221 0.779 37 H 0.225 0.775 38 H 0.095 0.905 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 26.849 -19.175 -3.169 33.145 hybrid contribution -1.289 1.309 0.138 1.843 sum 25.560 -17.866 -3.031 31.332 Atomic orbital electron populations 1.69922 1.07513 1.26937 1.59109 1.25627 0.96178 1.01723 1.01944 0.85294 0.78865 0.78654 0.78235 1.20321 1.22192 1.16587 1.18939 0.82727 0.93123 1.42281 0.93948 1.42608 1.02307 1.03653 1.89908 1.20599 0.93305 0.87107 0.92792 0.95355 1.21794 0.93484 0.98796 1.01739 1.21800 1.02536 0.95938 0.95723 1.22040 0.82198 1.03647 0.94164 1.48222 1.19210 1.09967 1.54538 1.18343 0.85619 0.83454 0.78451 1.90835 1.22952 1.84409 1.46937 1.19488 1.00734 0.97163 0.96851 1.17753 0.96864 0.90722 0.84436 1.91578 1.95010 1.68093 1.56019 1.21523 0.98643 0.89946 1.00840 1.21620 0.96306 1.01473 0.89526 1.17410 0.98427 0.87299 0.88768 1.91592 1.95264 1.65964 1.57063 1.20828 0.97057 0.96695 0.92408 1.98460 1.60109 1.96017 1.46672 1.22324 0.94135 0.85389 1.00195 0.93203 0.79384 0.89935 0.91011 0.86297 0.92453 0.88629 0.88406 0.77934 0.77521 0.90484 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.41 13.97 21.65 0.30 -65.11 16 2 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.96 45.64 27.74 68.60 1.90 47.54 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.24 -9.97 6.52 99.48 0.65 -9.32 16 7 C -0.24 -14.29 10.41 84.03 0.87 -13.42 16 8 H 0.04 2.88 8.06 -2.91 -0.02 2.85 16 9 N -0.74 -35.03 4.93 -322.58 -1.59 -36.62 16 10 C 0.17 6.68 2.92 45.07 0.13 6.81 16 11 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 12 C -0.12 -3.20 5.36 30.62 0.16 -3.03 16 13 C -0.12 -2.40 6.07 30.53 0.19 -2.21 16 14 C 0.10 2.02 6.31 86.22 0.54 2.57 16 15 N -0.59 -18.28 2.98 -823.40 -2.45 -20.73 16 16 C 0.55 19.11 5.83 86.72 0.51 19.61 16 17 O -0.57 -25.93 16.52 -3.96 -0.07 -25.99 16 18 C -0.14 -3.39 3.64 -20.04 -0.07 -3.46 16 19 C 0.12 2.20 7.29 22.66 0.17 2.36 16 20 F -0.13 -2.79 16.83 44.97 0.76 -2.04 16 21 C -0.09 -0.67 10.01 22.28 0.22 -0.45 16 22 C -0.07 -0.44 10.01 22.35 0.22 -0.22 16 23 C 0.10 1.51 7.26 22.35 0.16 1.67 16 24 F -0.12 -1.97 16.83 44.97 0.76 -1.21 16 25 C -0.04 -0.92 6.22 22.64 0.14 -0.78 16 26 Cl -0.04 -1.16 27.70 -2.72 -0.08 -1.23 16 27 C 0.10 4.03 6.02 86.36 0.52 4.55 16 28 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 29 H 0.37 16.17 5.66 -92.71 -0.52 15.64 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 1.56 6.23 -2.39 -0.01 1.54 16 35 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.20 -0.16 8.06 -2.91 -0.02 -0.19 16 37 H 0.21 -0.51 8.06 -2.91 -0.02 -0.53 16 38 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.05 2.26 7.00 -2.39 -0.02 2.24 16 Total: -1.00 -84.84 349.36 4.30 -80.54 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.53 Total: 14.21 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 4.23 Total: 10.64 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -3.74 Total: -122.46 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.07 Total: -25.99 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 1.51 Total: -3.25 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.90 Total: 47.54 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.23 kcal Total: -84.84 4.30 -80.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000279036.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.727 kcal (2) G-P(sol) polarization free energy of solvation -84.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds