Wall clock time and date at job start Wed Apr 1 2020 03:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00070 * 2 1 4 4 H 1.48502 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46904 * 299.99495 * 3 2 1 6 6 H 1.48499 * 109.47145 * 59.99740 * 3 2 1 7 7 C 1.38813 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00224 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99604 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64937 * 14.73068 * 9 7 2 11 11 C 1.54903 * 104.82865 * 155.89545 * 10 9 7 12 12 C 1.55153 * 101.58468 * 37.00912 * 11 10 9 13 13 C 1.47024 * 125.64558 * 194.76088 * 9 7 2 14 14 H 1.09002 * 110.00485 * 300.52187 * 13 9 7 15 15 C 1.52995 * 109.88389 * 61.61566 * 13 9 7 16 16 N 1.46506 * 109.47171 * 182.39701 * 15 13 9 17 17 C 1.34774 * 120.00109 * 185.13464 * 16 15 13 18 18 O 1.21581 * 119.99823 * 0.02562 * 17 16 15 19 19 C 1.47634 * 119.99815 * 180.02562 * 17 16 15 20 20 C 1.39700 * 120.14211 * 0.02562 * 19 17 16 21 21 C 1.38000 * 119.86270 * 179.97438 * 20 19 17 22 22 F 1.35095 * 119.92056 * 180.02562 * 21 20 19 23 23 C 1.38804 * 120.15396 * 359.97438 * 21 20 19 24 24 Cl 1.73597 * 119.85216 * 180.02562 * 23 21 20 25 25 C 1.38321 * 120.28989 * 0.04539 * 23 21 20 26 26 C 1.38260 * 120.13379 * 359.95366 * 25 23 21 27 27 F 1.35105 * 120.07587 * 180.30067 * 26 25 23 28 28 H 0.97001 * 119.99825 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.36653 * 37.05447 * 10 9 7 30 30 H 1.08998 * 110.45703 * 274.78312 * 10 9 7 31 31 H 1.09005 * 111.00384 * 278.93198 * 11 10 9 32 32 H 1.09003 * 111.00494 * 155.08885 * 11 10 9 33 33 H 1.09000 * 110.72323 * 206.13049 * 12 11 10 34 34 H 1.09002 * 110.71740 * 82.86083 * 12 11 10 35 35 H 1.09002 * 109.46996 * 62.39982 * 15 13 9 36 36 H 1.08997 * 109.47214 * 302.39724 * 15 13 9 37 37 H 0.97004 * 119.99180 * 5.13871 * 16 15 13 38 38 H 1.08003 * 120.06948 * 359.96138 * 20 19 17 39 39 H 1.08003 * 119.93057 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1074 -2.5529 -0.3046 11 6 -0.2461 -4.0222 -0.7751 12 6 0.7639 -4.7441 0.1555 13 6 1.8974 -3.7077 0.3055 14 1 2.7027 -3.9355 -0.3929 15 6 2.4318 -3.7246 1.7390 16 7 3.0505 -5.0238 2.0143 17 6 3.5003 -5.3071 3.2527 18 8 3.3922 -4.4847 4.1416 19 6 4.1242 -6.6161 3.5299 20 6 4.2504 -7.5630 2.5106 21 6 4.8350 -8.7846 2.7760 22 9 4.9581 -9.7009 1.7910 23 6 5.2979 -9.0734 4.0523 24 17 6.0327 -10.6123 4.3772 25 6 5.1759 -8.1407 5.0664 26 6 4.5921 -6.9131 4.8138 27 9 4.4790 -6.0006 5.8037 28 1 -0.4850 0.8401 -0.0004 29 1 -0.4070 -1.8700 -1.0996 30 1 -0.7091 -2.3820 0.5880 31 1 0.0429 -4.1265 -1.8210 32 1 -1.2591 -4.3905 -0.6129 33 1 1.1347 -5.6564 -0.3115 34 1 0.3099 -4.9616 1.1223 35 1 1.6096 -3.5590 2.4352 36 1 3.1743 -2.9358 1.8593 37 1 3.1363 -5.6800 1.3050 38 1 3.8909 -7.3396 1.5169 39 1 5.5377 -8.3717 6.0574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028106100.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:48 Heat of formation + Delta-G solvation = -77.488883 kcal Electronic energy + Delta-G solvation = -27158.176826 eV Core-core repulsion = 22763.520711 eV Total energy + Delta-G solvation = -4394.656115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.47957 -49.24131 -40.25783 -38.75480 -37.66597 -37.05341 -34.51288 -32.59230 -32.01061 -30.60780 -29.68230 -28.67698 -25.38884 -24.66635 -23.96887 -22.98352 -20.91330 -20.22788 -19.75684 -18.70773 -18.00771 -17.84152 -16.97836 -16.53985 -16.45601 -15.83033 -15.78115 -15.25179 -14.99943 -14.92085 -14.80831 -14.42604 -14.09567 -13.89577 -13.38765 -13.37221 -13.19005 -13.12318 -12.29144 -12.15014 -11.95850 -11.88935 -11.70419 -11.66275 -11.37782 -10.98366 -10.84175 -10.33037 -10.17974 -10.05836 -9.93037 -9.85921 -9.76020 -9.74562 -9.14920 -8.81629 -8.63486 -6.89744 -5.81735 -3.18861 -0.11873 0.30144 1.26901 2.24513 3.02045 3.21103 3.36825 3.37809 3.43800 3.45419 3.58887 3.85968 4.20790 4.40522 4.48128 4.71799 4.94702 5.04928 5.24144 5.28038 5.32417 5.35570 5.44562 5.56058 5.74075 5.94560 5.96977 6.05568 6.16915 6.38814 6.44387 6.48340 6.60974 6.71178 6.96132 7.46220 7.50863 7.57166 7.74878 8.16867 8.21620 9.12274 9.72775 10.39432 11.30244 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.002494 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.917126 B =11224.038884 C =12108.471770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.587 5.587 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.151 3.849 14 H 0.038 0.962 15 C 0.108 3.892 16 N -0.711 5.711 17 C 0.549 3.451 18 O -0.516 6.516 19 C -0.131 4.131 20 C -0.082 4.082 21 C 0.095 3.905 22 F -0.118 7.118 23 C -0.029 4.029 24 Cl -0.030 7.030 25 C -0.129 4.129 26 C 0.164 3.836 27 F -0.100 7.100 28 H 0.254 0.746 29 H 0.072 0.928 30 H 0.027 0.973 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.395 0.605 38 H 0.161 0.839 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.880 -21.818 5.696 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.364 4.364 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.017 4.017 16 N -0.363 5.363 17 C 0.333 3.667 18 O -0.392 6.392 19 C -0.136 4.136 20 C -0.102 4.102 21 C 0.075 3.925 22 F -0.096 7.096 23 C -0.057 4.057 24 Cl -0.001 7.001 25 C -0.149 4.149 26 C 0.143 3.857 27 F -0.078 7.078 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.229 0.771 38 H 0.178 0.822 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.777 -21.051 6.327 23.669 hybrid contribution 0.575 0.376 -0.191 0.713 sum 9.351 -20.676 6.136 23.507 Atomic orbital electron populations 1.69943 1.05052 1.25306 1.55680 1.24929 0.95684 0.97937 1.01221 0.86074 0.78951 0.83612 0.77291 1.20329 1.21670 1.21554 1.19025 0.90425 0.82112 1.44858 0.90552 1.44495 1.06471 1.00988 1.79216 1.21460 0.84745 0.90178 0.98915 1.23003 0.97578 0.99581 0.98539 1.22625 0.97182 0.96953 0.99814 1.21141 0.94595 0.88297 0.91691 0.94398 1.22391 0.97723 0.81981 0.99602 1.46071 1.60488 1.19565 1.10148 1.17763 0.79548 0.85651 0.83743 1.90895 1.55665 1.48094 1.44566 1.20224 1.03675 0.96819 0.92844 1.21195 0.97790 0.90635 1.00560 1.17112 1.02574 0.88321 0.84534 1.91592 1.93837 1.64571 1.59620 1.20841 1.01286 0.90394 0.93225 1.98425 1.80374 1.25878 1.95431 1.20881 1.01930 0.91323 1.00724 1.17411 0.96724 0.86765 0.84795 1.91671 1.92876 1.64511 1.58695 0.93580 0.90940 0.95520 0.92253 0.92286 0.92382 0.91748 0.91108 0.91043 0.77056 0.82164 0.81892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.17 10.58 55.49 0.59 -25.59 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.10 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.30 9.76 -15.05 -0.15 -6.44 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.59 -14.07 3.13 -162.58 -0.51 -14.58 16 10 C 0.17 3.97 5.41 -2.53 -0.01 3.95 16 11 C -0.15 -2.59 7.08 -24.59 -0.17 -2.77 16 12 C -0.13 -1.99 6.10 -24.90 -0.15 -2.14 16 13 C 0.15 2.81 3.22 -66.96 -0.22 2.60 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 15 C 0.11 1.96 5.07 -4.04 -0.02 1.93 16 16 N -0.71 -9.79 5.28 -61.32 -0.32 -10.11 16 17 C 0.55 8.16 7.77 -12.43 -0.10 8.06 16 18 O -0.52 -9.99 15.33 5.29 0.08 -9.90 16 19 C -0.13 -1.46 5.88 -104.92 -0.62 -2.08 16 20 C -0.08 -0.69 9.51 -39.12 -0.37 -1.06 16 21 C 0.10 0.80 7.26 -39.46 -0.29 0.52 16 22 F -0.12 -1.04 16.82 2.25 0.04 -1.00 16 23 C -0.03 -0.24 6.33 -39.34 -0.25 -0.49 16 24 Cl -0.03 -0.23 28.60 -51.86 -1.48 -1.71 16 25 C -0.13 -1.04 9.79 -39.54 -0.39 -1.43 16 26 C 0.16 1.79 7.28 -38.98 -0.28 1.50 16 27 F -0.10 -1.34 15.54 2.25 0.04 -1.30 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.07 1.87 6.94 -51.93 -0.36 1.51 16 30 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.00 7.81 -51.93 -0.41 0.59 16 35 H 0.07 1.45 8.08 -51.93 -0.42 1.03 16 36 H 0.07 1.48 7.92 -51.93 -0.41 1.07 16 37 H 0.39 4.04 6.36 -40.82 -0.26 3.78 16 38 H 0.16 0.97 6.40 -52.48 -0.34 0.64 16 39 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -31.30 350.41 -8.70 -40.00 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.27 Total: 0.10 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -3.11 Total: 2.06 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.24 Total: -50.28 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.07 Total: -2.31 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.48 Total: -1.71 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.30 -8.70 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028106100.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.491 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds