Wall clock time and date at job start Wed Apr 1 2020 03:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00070 * 2 1 4 4 H 1.48502 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46904 * 299.99495 * 3 2 1 6 6 H 1.48499 * 109.47145 * 59.99740 * 3 2 1 7 7 C 1.38813 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00224 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99604 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64937 * 14.73068 * 9 7 2 11 11 C 1.54903 * 104.82865 * 155.89545 * 10 9 7 12 12 C 1.55153 * 101.58468 * 37.00912 * 11 10 9 13 13 C 1.47024 * 125.64558 * 194.76088 * 9 7 2 14 14 H 1.09002 * 110.00485 * 300.52187 * 13 9 7 15 15 C 1.52995 * 109.88389 * 61.61566 * 13 9 7 16 16 N 1.46506 * 109.47171 * 182.39701 * 15 13 9 17 17 C 1.34774 * 120.00109 * 185.13464 * 16 15 13 18 18 O 1.21581 * 119.99823 * 0.02562 * 17 16 15 19 19 C 1.47634 * 119.99815 * 180.02562 * 17 16 15 20 20 C 1.39700 * 120.14211 * 0.02562 * 19 17 16 21 21 C 1.38000 * 119.86270 * 179.97438 * 20 19 17 22 22 F 1.35095 * 119.92056 * 180.02562 * 21 20 19 23 23 C 1.38804 * 120.15396 * 359.97438 * 21 20 19 24 24 Cl 1.73597 * 119.85216 * 180.02562 * 23 21 20 25 25 C 1.38321 * 120.28989 * 0.04539 * 23 21 20 26 26 C 1.38260 * 120.13379 * 359.95366 * 25 23 21 27 27 F 1.35105 * 120.07587 * 180.30067 * 26 25 23 28 28 H 0.97001 * 119.99825 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.36653 * 37.05447 * 10 9 7 30 30 H 1.08998 * 110.45703 * 274.78312 * 10 9 7 31 31 H 1.09005 * 111.00384 * 278.93198 * 11 10 9 32 32 H 1.09003 * 111.00494 * 155.08885 * 11 10 9 33 33 H 1.09000 * 110.72323 * 206.13049 * 12 11 10 34 34 H 1.09002 * 110.71740 * 82.86083 * 12 11 10 35 35 H 1.09002 * 109.46996 * 62.39982 * 15 13 9 36 36 H 1.08997 * 109.47214 * 302.39724 * 15 13 9 37 37 H 0.97004 * 119.99180 * 5.13871 * 16 15 13 38 38 H 1.08003 * 120.06948 * 359.96138 * 20 19 17 39 39 H 1.08003 * 119.93057 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1074 -2.5529 -0.3046 11 6 -0.2461 -4.0222 -0.7751 12 6 0.7639 -4.7441 0.1555 13 6 1.8974 -3.7077 0.3055 14 1 2.7027 -3.9355 -0.3929 15 6 2.4318 -3.7246 1.7390 16 7 3.0505 -5.0238 2.0143 17 6 3.5003 -5.3071 3.2527 18 8 3.3922 -4.4847 4.1416 19 6 4.1242 -6.6161 3.5299 20 6 4.2504 -7.5630 2.5106 21 6 4.8350 -8.7846 2.7760 22 9 4.9581 -9.7009 1.7910 23 6 5.2979 -9.0734 4.0523 24 17 6.0327 -10.6123 4.3772 25 6 5.1759 -8.1407 5.0664 26 6 4.5921 -6.9131 4.8138 27 9 4.4790 -6.0006 5.8037 28 1 -0.4850 0.8401 -0.0004 29 1 -0.4070 -1.8700 -1.0996 30 1 -0.7091 -2.3820 0.5880 31 1 0.0429 -4.1265 -1.8210 32 1 -1.2591 -4.3905 -0.6129 33 1 1.1347 -5.6564 -0.3115 34 1 0.3099 -4.9616 1.1223 35 1 1.6096 -3.5590 2.4352 36 1 3.1743 -2.9358 1.8593 37 1 3.1363 -5.6800 1.3050 38 1 3.8909 -7.3396 1.5169 39 1 5.5377 -8.3717 6.0574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028106100.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:47 Heat of formation + Delta-G solvation = -96.565401 kcal Electronic energy + Delta-G solvation = -27159.004046 eV Core-core repulsion = 22763.520711 eV Total energy + Delta-G solvation = -4395.483335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.15921 -50.14751 -41.33015 -39.77135 -39.13191 -37.74163 -35.92801 -34.43929 -32.91040 -31.43008 -31.31565 -30.21055 -26.84685 -26.16382 -25.10007 -23.91669 -22.17869 -21.75117 -21.22348 -19.74794 -18.88331 -18.70624 -18.54434 -17.57162 -17.34795 -17.23118 -16.64095 -16.59547 -16.28426 -16.10774 -15.76818 -15.66633 -15.56249 -14.95445 -14.69893 -14.52185 -14.02964 -13.98591 -13.94678 -13.66206 -13.42432 -13.06968 -12.97125 -12.85779 -12.69048 -12.50394 -12.27483 -11.98431 -11.88596 -11.73417 -11.48823 -11.38879 -11.24272 -10.69090 -10.48241 -10.19264 -9.84865 -8.86098 -7.89181 -5.26575 -0.90569 -0.38740 0.61786 1.36121 1.43690 1.46142 1.54998 1.87448 2.21648 2.48352 2.66800 2.82706 3.16316 3.31107 3.36627 3.62587 3.76495 3.95149 3.98410 4.07921 4.18604 4.27996 4.34255 4.45142 4.53976 4.60751 4.64084 4.73900 4.95932 5.01201 5.14306 5.18056 5.22383 5.30402 5.48098 5.55940 5.67347 5.79345 6.22809 6.38838 7.05175 7.09257 7.76187 8.41565 9.21958 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.002494 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.917126 B =11224.038884 C =12108.471770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.297 1.297 7 C -0.237 4.237 8 H 0.079 0.921 9 N -0.610 5.610 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.115 4.115 13 C 0.147 3.853 14 H 0.058 0.942 15 C 0.128 3.872 16 N -0.694 5.694 17 C 0.550 3.450 18 O -0.570 6.570 19 C -0.143 4.143 20 C -0.064 4.064 21 C 0.098 3.902 22 F -0.116 7.116 23 C -0.024 4.024 24 Cl -0.019 7.019 25 C -0.114 4.114 26 C 0.147 3.853 27 F -0.121 7.121 28 H 0.247 0.753 29 H 0.035 0.965 30 H -0.009 1.009 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.416 0.584 38 H 0.188 0.812 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.363 -25.286 4.834 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.224 1.224 7 C -0.367 4.367 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.152 4.152 13 C 0.040 3.960 14 H 0.075 0.925 15 C 0.002 3.998 16 N -0.347 5.347 17 C 0.336 3.664 18 O -0.449 6.449 19 C -0.148 4.148 20 C -0.083 4.083 21 C 0.078 3.922 22 F -0.094 7.094 23 C -0.052 4.052 24 Cl 0.010 6.990 25 C -0.133 4.133 26 C 0.126 3.874 27 F -0.099 7.099 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.009 0.991 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.255 0.745 38 H 0.205 0.795 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 10.295 -24.597 5.433 27.212 hybrid contribution 0.188 1.304 0.096 1.321 sum 10.484 -23.293 5.529 26.135 Atomic orbital electron populations 1.70142 1.06299 1.25292 1.57623 1.25678 0.96485 1.01000 1.02242 0.85143 0.78427 0.79970 0.76630 1.19017 1.21593 1.22406 1.19341 0.90793 0.83535 1.42986 0.90356 1.44755 1.06876 1.02207 1.79621 1.21270 0.84116 0.93596 0.96273 1.22865 0.99692 0.95171 0.99448 1.22639 0.95151 0.97517 0.99935 1.21375 0.96272 0.86758 0.91605 0.92482 1.21804 0.95939 0.83298 0.98799 1.45697 1.59791 1.18359 1.10806 1.18256 0.78587 0.86499 0.83010 1.90873 1.57763 1.50162 1.46151 1.19844 1.05379 0.95576 0.93956 1.21303 0.96554 0.89672 1.00794 1.17102 1.02305 0.88243 0.84571 1.91607 1.93785 1.64468 1.59577 1.20947 1.00459 0.90648 0.93139 1.98440 1.80076 1.25101 1.95388 1.20988 1.00629 0.89879 1.01799 1.17699 0.97848 0.87435 0.84393 1.91619 1.93229 1.65526 1.59568 0.94356 0.94693 0.99126 0.90990 0.90033 0.87230 0.91636 0.94150 0.94287 0.74477 0.79473 0.79626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.71 10.58 21.65 0.23 -56.48 16 2 C -0.06 -3.42 5.47 84.86 0.46 -2.95 16 3 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 7 C -0.24 -12.95 9.76 84.03 0.82 -12.13 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.61 -29.64 3.13 -668.28 -2.09 -31.73 16 10 C 0.17 8.17 5.41 86.85 0.47 8.64 16 11 C -0.13 -4.36 7.08 31.98 0.23 -4.13 16 12 C -0.11 -3.17 6.10 31.78 0.19 -2.97 16 13 C 0.15 5.25 3.22 45.34 0.15 5.40 16 14 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 15 C 0.13 4.66 5.07 86.38 0.44 5.10 16 16 N -0.69 -17.98 5.28 -466.17 -2.46 -20.44 16 17 C 0.55 16.07 7.77 86.72 0.67 16.74 16 18 O -0.57 -22.80 15.33 -3.97 -0.06 -22.86 16 19 C -0.14 -2.95 5.88 -20.06 -0.12 -3.06 16 20 C -0.06 -0.85 9.51 22.57 0.21 -0.63 16 21 C 0.10 1.31 7.26 22.35 0.16 1.47 16 22 F -0.12 -1.60 16.82 44.97 0.76 -0.85 16 23 C -0.02 -0.31 6.33 22.43 0.14 -0.17 16 24 Cl -0.02 -0.23 28.60 -2.72 -0.08 -0.31 16 25 C -0.11 -1.56 9.79 22.29 0.22 -1.34 16 26 C 0.15 3.03 7.28 22.66 0.17 3.20 16 27 F -0.12 -3.30 15.54 44.97 0.70 -2.60 16 28 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 29 H 0.03 1.88 6.94 -2.39 -0.02 1.87 16 30 H -0.01 -0.50 8.06 -2.39 -0.02 -0.52 16 31 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.83 7.81 -2.39 -0.02 1.81 16 35 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 36 H 0.04 1.67 7.92 -2.39 -0.02 1.65 16 37 H 0.42 6.98 6.36 -92.71 -0.59 6.39 16 38 H 0.19 1.35 6.40 -2.91 -0.02 1.33 16 39 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -73.57 350.41 3.76 -69.81 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 0.52 Total: 4.21 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 4.22 Total: 13.15 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -4.32 Total: -108.65 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.06 Total: -22.86 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 1.46 Total: -3.45 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -73.57 3.76 -69.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028106100.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.760 kcal (2) G-P(sol) polarization free energy of solvation -73.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds