Wall clock time and date at job start Wed Apr 1 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00251 * 2 1 4 4 H 1.48495 * 109.47051 * 270.00233 * 3 2 1 5 5 H 1.48494 * 109.47108 * 30.00495 * 3 2 1 6 6 H 1.48507 * 109.47177 * 150.00251 * 3 2 1 7 7 C 1.38813 * 119.99552 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99872 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00690 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64137 * 345.82208 * 9 7 2 11 11 C 1.54909 * 104.83008 * 204.14921 * 10 9 7 12 12 C 1.55152 * 101.58264 * 322.99430 * 11 10 9 13 13 C 1.47018 * 125.65314 * 165.84857 * 9 7 2 14 14 H 1.08999 * 110.00923 * 59.43394 * 13 9 7 15 15 C 1.52996 * 109.88414 * 298.33809 * 13 9 7 16 16 N 1.46495 * 109.47435 * 176.74020 * 15 13 9 17 17 C 1.34776 * 120.00110 * 174.96261 * 16 15 13 18 18 O 1.21581 * 120.00001 * 0.02562 * 17 16 15 19 19 C 1.47626 * 120.00065 * 179.97438 * 17 16 15 20 20 C 1.39881 * 120.16824 * 270.00528 * 19 17 16 21 21 F 1.35102 * 120.07828 * 0.02562 * 20 19 17 22 22 C 1.38221 * 119.84277 * 179.74179 * 20 19 17 23 23 C 1.38288 * 120.17959 * 0.25378 * 22 20 19 24 24 C 1.38531 * 120.33589 * 359.97438 * 23 22 20 25 25 F 1.35104 * 119.92029 * 180.02562 * 24 23 22 26 26 C 1.38280 * 120.15364 * 0.03686 * 24 23 22 27 27 Cl 1.73599 * 120.08682 * 179.97438 * 26 24 23 28 28 H 0.97000 * 119.99538 * 359.97438 * 1 2 3 29 29 H 1.09006 * 110.36973 * 85.31424 * 10 9 7 30 30 H 1.09001 * 110.46421 * 323.03920 * 10 9 7 31 31 H 1.09003 * 111.00208 * 204.91693 * 11 10 9 32 32 H 1.08998 * 111.00166 * 81.07352 * 11 10 9 33 33 H 1.09003 * 110.71832 * 277.13560 * 12 11 10 34 34 H 1.08996 * 110.72014 * 153.86959 * 12 11 10 35 35 H 1.09003 * 109.47411 * 56.73633 * 15 13 9 36 36 H 1.09004 * 109.46959 * 296.74173 * 15 13 9 37 37 H 0.97003 * 119.99733 * 354.97476 * 16 15 13 38 38 H 1.07998 * 119.90879 * 180.23371 * 22 20 19 39 39 H 1.07998 * 119.83097 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3882 -0.0005 10 6 -0.1098 -2.5515 0.2934 11 6 -0.2524 -4.0182 0.7710 12 6 0.7655 -4.7450 -0.1470 13 6 1.9002 -3.7094 -0.2931 14 1 2.6995 -3.9332 0.4133 15 6 2.4467 -3.7343 -1.7219 16 7 3.0859 -5.0274 -1.9778 17 6 3.5518 -5.3169 -3.2089 18 8 3.4419 -4.5048 -4.1070 19 6 4.1965 -6.6197 -3.4666 20 6 5.5768 -6.7673 -3.2943 21 9 6.3248 -5.7172 -2.8906 22 6 6.1726 -7.9915 -3.5323 23 6 5.4088 -9.0679 -3.9450 24 6 4.0420 -8.9289 -4.1226 25 9 3.3038 -9.9862 -4.5256 26 6 3.4316 -7.7103 -3.8887 27 17 1.7188 -7.5378 -4.1124 28 1 -0.4849 0.8401 0.0004 29 1 -0.7026 -2.3862 -0.6063 30 1 -0.4181 -1.8642 1.0814 31 1 -1.2640 -4.3874 0.6022 32 1 0.0277 -4.1164 1.8198 33 1 0.3197 -4.9681 -1.1164 34 1 1.1324 -5.6547 0.3284 35 1 3.1789 -2.9363 -1.8449 36 1 1.6280 -3.5879 -2.4266 37 1 3.1737 -5.6752 -1.2612 38 1 7.2376 -8.1077 -3.3960 39 1 5.8803 -10.0218 -4.1298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028156810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:34 Heat of formation + Delta-G solvation = -78.145669 kcal Electronic energy + Delta-G solvation = -27563.701783 eV Core-core repulsion = 23169.017188 eV Total energy + Delta-G solvation = -4394.684595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.45757 -49.40230 -40.19574 -38.66529 -37.57812 -36.97505 -34.37341 -32.53445 -31.99507 -30.60215 -29.65881 -28.65894 -25.45447 -24.60203 -23.60799 -23.26118 -20.90404 -20.20285 -19.68775 -18.57678 -18.05809 -17.98062 -16.96741 -16.59236 -16.39778 -15.98259 -15.74512 -15.34519 -15.01396 -14.89862 -14.73079 -14.38519 -13.94834 -13.83064 -13.46775 -13.28836 -13.20467 -12.89608 -12.20849 -12.10525 -11.90957 -11.83161 -11.76332 -11.44878 -11.35518 -10.96218 -10.80940 -10.29935 -10.20222 -10.07647 -9.90048 -9.83234 -9.70545 -9.60465 -9.12264 -8.80704 -8.60749 -6.86937 -5.78557 -3.15355 0.13437 0.23983 1.44600 2.43914 2.55628 3.03033 3.39775 3.45457 3.46186 3.53572 3.60541 3.99479 4.29079 4.35860 4.48716 4.71975 5.07297 5.15068 5.25494 5.30433 5.35876 5.37434 5.48111 5.59801 5.78529 5.97841 6.01171 6.09061 6.22222 6.42784 6.48147 6.52598 6.65096 6.74881 7.00446 7.49628 7.54337 7.59648 7.77605 8.18071 8.24274 9.15299 9.75792 10.42611 11.33223 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.003085 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.698486 B = 9074.202392 C =10074.067718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.153 3.847 14 H 0.039 0.961 15 C 0.108 3.892 16 N -0.704 5.704 17 C 0.557 3.443 18 O -0.513 6.513 19 C -0.121 4.121 20 C 0.137 3.863 21 F -0.115 7.115 22 C -0.121 4.121 23 C -0.100 4.100 24 C 0.099 3.901 25 F -0.119 7.119 26 C -0.023 4.023 27 Cl -0.015 7.015 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.398 0.602 38 H 0.160 0.840 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.342 -22.073 -5.053 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.364 4.364 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.044 3.956 14 H 0.056 0.944 15 C -0.017 4.017 16 N -0.354 5.354 17 C 0.339 3.661 18 O -0.389 6.389 19 C -0.127 4.127 20 C 0.116 3.884 21 F -0.093 7.093 22 C -0.140 4.140 23 C -0.119 4.119 24 C 0.079 3.921 25 F -0.097 7.097 26 C -0.052 4.052 27 Cl 0.015 6.985 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.232 0.768 38 H 0.177 0.823 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.997 -21.149 -5.677 23.674 hybrid contribution 0.357 0.578 0.122 0.690 sum 9.353 -20.571 -5.554 23.271 Atomic orbital electron populations 1.69939 1.05031 1.25353 1.55732 1.24911 0.95680 0.97889 1.01297 0.86144 0.78716 0.83312 0.77746 1.21354 1.21633 1.20546 1.18991 0.90416 0.82151 1.44826 0.90600 1.44490 1.06156 1.00850 1.79677 1.21467 0.84660 0.90248 0.98899 1.23004 0.97522 0.99574 0.98596 1.22614 0.97093 0.96946 0.99828 1.21126 0.94552 0.88194 0.91740 0.94388 1.22402 0.97335 0.82157 0.99780 1.46103 1.58957 1.20173 1.10188 1.17663 0.79342 0.85141 0.83989 1.90872 1.56090 1.48000 1.43899 1.19905 0.92806 0.95285 1.04671 1.17458 0.87077 0.85095 0.98735 1.91621 1.75165 1.55205 1.87302 1.21070 1.02031 0.90237 1.00651 1.21087 0.90744 1.00783 0.99312 1.17193 0.89570 0.83097 1.02246 1.91586 1.76520 1.53800 1.87783 1.20727 0.88167 0.92693 1.03606 1.98458 1.07472 1.97637 1.94941 0.93568 0.95620 0.90820 0.92327 0.92277 0.91777 0.92375 0.91042 0.91159 0.76827 0.82270 0.82221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.48 10.56 55.49 0.59 -25.89 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.24 -6.40 9.75 -15.06 -0.15 -6.55 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.59 -14.42 3.13 -162.58 -0.51 -14.93 16 10 C 0.17 4.06 5.42 -2.53 -0.01 4.05 16 11 C -0.15 -2.69 7.08 -24.59 -0.17 -2.86 16 12 C -0.13 -2.09 6.14 -24.90 -0.15 -2.24 16 13 C 0.15 2.96 3.21 -66.96 -0.21 2.74 16 14 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 15 C 0.11 2.06 5.08 -4.05 -0.02 2.04 16 16 N -0.70 -10.72 5.34 -61.32 -0.33 -11.05 16 17 C 0.56 9.00 5.95 -12.43 -0.07 8.92 16 18 O -0.51 -10.48 17.10 5.29 0.09 -10.39 16 19 C -0.12 -1.52 5.64 -104.89 -0.59 -2.11 16 20 C 0.14 1.43 7.29 -38.97 -0.28 1.15 16 21 F -0.11 -1.40 16.83 2.25 0.04 -1.37 16 22 C -0.12 -0.80 10.01 -39.57 -0.40 -1.20 16 23 C -0.10 -0.61 10.01 -39.46 -0.39 -1.00 16 24 C 0.10 0.89 7.26 -39.46 -0.29 0.60 16 25 F -0.12 -1.10 16.83 2.25 0.04 -1.07 16 26 C -0.02 -0.26 6.36 -39.01 -0.25 -0.51 16 27 Cl -0.01 -0.18 27.70 -51.86 -1.44 -1.62 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 30 H 0.07 1.94 6.90 -51.93 -0.36 1.58 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.06 7.80 -51.93 -0.40 0.65 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.54 7.90 -51.93 -0.41 1.13 16 36 H 0.07 1.50 8.06 -51.93 -0.42 1.08 16 37 H 0.40 4.88 8.35 -40.82 -0.34 4.54 16 38 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -32.12 354.90 -8.72 -40.84 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.43 Total: 0.18 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -3.09 Total: 2.93 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.25 Total: -51.87 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.08 Total: -2.43 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.44 Total: -1.62 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.12 -8.72 -40.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028156810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.309 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds