Wall clock time and date at job start Wed Apr 1 2020 03:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00251 * 2 1 4 4 H 1.48495 * 109.47051 * 270.00233 * 3 2 1 5 5 H 1.48494 * 109.47108 * 30.00495 * 3 2 1 6 6 H 1.48507 * 109.47177 * 150.00251 * 3 2 1 7 7 C 1.38813 * 119.99552 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99872 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00690 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64137 * 345.82208 * 9 7 2 11 11 C 1.54909 * 104.83008 * 204.14921 * 10 9 7 12 12 C 1.55152 * 101.58264 * 322.99430 * 11 10 9 13 13 C 1.47018 * 125.65314 * 165.84857 * 9 7 2 14 14 H 1.08999 * 110.00923 * 59.43394 * 13 9 7 15 15 C 1.52996 * 109.88414 * 298.33809 * 13 9 7 16 16 N 1.46495 * 109.47435 * 176.74020 * 15 13 9 17 17 C 1.34776 * 120.00110 * 174.96261 * 16 15 13 18 18 O 1.21581 * 120.00001 * 0.02562 * 17 16 15 19 19 C 1.47626 * 120.00065 * 179.97438 * 17 16 15 20 20 C 1.39881 * 120.16824 * 270.00528 * 19 17 16 21 21 F 1.35102 * 120.07828 * 0.02562 * 20 19 17 22 22 C 1.38221 * 119.84277 * 179.74179 * 20 19 17 23 23 C 1.38288 * 120.17959 * 0.25378 * 22 20 19 24 24 C 1.38531 * 120.33589 * 359.97438 * 23 22 20 25 25 F 1.35104 * 119.92029 * 180.02562 * 24 23 22 26 26 C 1.38280 * 120.15364 * 0.03686 * 24 23 22 27 27 Cl 1.73599 * 120.08682 * 179.97438 * 26 24 23 28 28 H 0.97000 * 119.99538 * 359.97438 * 1 2 3 29 29 H 1.09006 * 110.36973 * 85.31424 * 10 9 7 30 30 H 1.09001 * 110.46421 * 323.03920 * 10 9 7 31 31 H 1.09003 * 111.00208 * 204.91693 * 11 10 9 32 32 H 1.08998 * 111.00166 * 81.07352 * 11 10 9 33 33 H 1.09003 * 110.71832 * 277.13560 * 12 11 10 34 34 H 1.08996 * 110.72014 * 153.86959 * 12 11 10 35 35 H 1.09003 * 109.47411 * 56.73633 * 15 13 9 36 36 H 1.09004 * 109.46959 * 296.74173 * 15 13 9 37 37 H 0.97003 * 119.99733 * 354.97476 * 16 15 13 38 38 H 1.07998 * 119.90879 * 180.23371 * 22 20 19 39 39 H 1.07998 * 119.83097 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3882 -0.0005 10 6 -0.1098 -2.5515 0.2934 11 6 -0.2524 -4.0182 0.7710 12 6 0.7655 -4.7450 -0.1470 13 6 1.9002 -3.7094 -0.2931 14 1 2.6995 -3.9332 0.4133 15 6 2.4467 -3.7343 -1.7219 16 7 3.0859 -5.0274 -1.9778 17 6 3.5518 -5.3169 -3.2089 18 8 3.4419 -4.5048 -4.1070 19 6 4.1965 -6.6197 -3.4666 20 6 5.5768 -6.7673 -3.2943 21 9 6.3248 -5.7172 -2.8906 22 6 6.1726 -7.9915 -3.5323 23 6 5.4088 -9.0679 -3.9450 24 6 4.0420 -8.9289 -4.1226 25 9 3.3038 -9.9862 -4.5256 26 6 3.4316 -7.7103 -3.8887 27 17 1.7188 -7.5378 -4.1124 28 1 -0.4849 0.8401 0.0004 29 1 -0.7026 -2.3862 -0.6063 30 1 -0.4181 -1.8642 1.0814 31 1 -1.2640 -4.3874 0.6022 32 1 0.0277 -4.1164 1.8198 33 1 0.3197 -4.9681 -1.1164 34 1 1.1324 -5.6547 0.3284 35 1 3.1789 -2.9363 -1.8449 36 1 1.6280 -3.5879 -2.4266 37 1 3.1737 -5.6752 -1.2612 38 1 7.2376 -8.1077 -3.3960 39 1 5.8803 -10.0218 -4.1298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028156810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:33 Heat of formation + Delta-G solvation = -98.636605 kcal Electronic energy + Delta-G solvation = -27564.590337 eV Core-core repulsion = 23169.017188 eV Total energy + Delta-G solvation = -4395.573149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.25083 -50.14978 -41.34022 -39.76642 -39.11024 -37.82855 -35.90857 -34.44715 -32.87675 -31.47466 -31.28468 -30.26767 -26.90711 -26.23612 -24.83599 -24.08757 -22.21835 -21.80681 -21.26275 -19.69662 -18.91571 -18.75002 -18.59396 -17.76370 -17.49303 -17.12633 -16.72008 -16.57871 -16.28686 -16.20237 -15.79487 -15.69047 -15.57577 -14.87956 -14.81209 -14.34718 -14.07099 -13.99455 -13.92168 -13.68290 -13.44443 -13.04086 -12.93997 -12.87180 -12.71432 -12.57011 -12.35597 -12.02488 -11.91390 -11.77909 -11.51622 -11.44039 -11.33997 -10.70570 -10.38971 -10.26887 -9.85741 -8.88926 -7.90071 -5.27958 -0.59414 -0.45926 0.61752 1.19433 1.43150 1.45994 1.53387 1.79281 1.96590 2.47249 2.80165 2.81259 3.24590 3.29929 3.52499 3.62601 3.72794 3.88553 3.93862 3.96388 4.22972 4.39891 4.43213 4.46211 4.51503 4.68559 4.69357 4.80256 4.90066 4.96116 5.09413 5.13274 5.24397 5.36364 5.44829 5.51045 5.64495 5.76367 6.20414 6.28644 6.94246 7.07172 7.73806 8.39552 9.20694 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.003085 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.698486 B = 9074.202392 C =10074.067718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.971 3.029 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.266 1.266 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.174 3.826 11 C -0.132 4.132 12 C -0.114 4.114 13 C 0.150 3.850 14 H 0.054 0.946 15 C 0.129 3.871 16 N -0.690 5.690 17 C 0.559 3.441 18 O -0.566 6.566 19 C -0.143 4.143 20 C 0.124 3.876 21 F -0.130 7.130 22 C -0.095 4.095 23 C -0.070 4.070 24 C 0.100 3.900 25 F -0.120 7.120 26 C -0.036 4.036 27 Cl -0.037 7.037 28 H 0.248 0.752 29 H -0.010 1.010 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.416 0.584 38 H 0.201 0.799 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.938 -25.876 -4.596 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.800 3.200 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.334 5.334 10 C 0.049 3.951 11 C -0.171 4.171 12 C -0.152 4.152 13 C 0.042 3.958 14 H 0.072 0.928 15 C 0.003 3.997 16 N -0.341 5.341 17 C 0.343 3.657 18 O -0.445 6.445 19 C -0.148 4.148 20 C 0.103 3.897 21 F -0.109 7.109 22 C -0.113 4.113 23 C -0.089 4.089 24 C 0.079 3.921 25 F -0.098 7.098 26 C -0.064 4.064 27 Cl -0.008 7.008 28 H 0.057 0.943 29 H 0.008 0.992 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.253 0.747 38 H 0.218 0.782 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 11.621 -25.021 -5.191 28.073 hybrid contribution -0.357 1.632 -0.061 1.672 sum 11.264 -23.389 -5.252 26.486 Atomic orbital electron populations 1.70142 1.06295 1.25416 1.57419 1.25680 0.96511 1.00997 1.02058 0.85188 0.78020 0.79528 0.77293 1.21845 1.21747 1.19101 1.19310 0.90778 0.83550 1.43398 0.90470 1.44747 1.06601 1.01981 1.80076 1.21275 0.83983 0.93520 0.96354 1.22869 0.99517 0.95282 0.99422 1.22601 0.95237 0.97391 0.99922 1.21322 0.96067 0.86825 0.91568 0.92784 1.21826 0.95612 0.83242 0.99044 1.45819 1.58309 1.19025 1.10966 1.18212 0.78241 0.86136 0.83081 1.90835 1.58034 1.50247 1.45385 1.19522 0.93863 0.93504 1.07943 1.17791 0.86156 0.86173 0.99560 1.91586 1.75301 1.56315 1.87654 1.21512 1.03847 0.88086 0.97877 1.21616 0.89008 1.02274 0.95966 1.17395 0.90642 0.82045 1.01993 1.91591 1.76882 1.53582 1.87777 1.20788 0.87103 0.93549 1.04986 1.98447 1.09369 1.97771 1.95189 0.94289 0.99166 0.94312 0.89989 0.90921 0.91904 0.87781 0.94241 0.94111 0.74702 0.78191 0.77627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.37 10.56 21.65 0.23 -57.15 16 2 C -0.06 -3.38 5.47 84.86 0.46 -2.91 16 3 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 4 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.24 -13.52 9.75 84.03 0.82 -12.70 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.61 -30.77 3.13 -668.27 -2.09 -32.86 16 10 C 0.17 8.50 5.42 86.86 0.47 8.97 16 11 C -0.13 -4.60 7.08 31.98 0.23 -4.38 16 12 C -0.11 -3.51 6.14 31.78 0.20 -3.31 16 13 C 0.15 5.77 3.21 45.34 0.15 5.91 16 14 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 15 C 0.13 5.10 5.08 86.38 0.44 5.53 16 16 N -0.69 -21.08 5.34 -466.19 -2.49 -23.57 16 17 C 0.56 18.42 5.95 86.72 0.52 18.94 16 18 O -0.57 -24.32 17.10 -3.97 -0.07 -24.39 16 19 C -0.14 -3.44 5.64 -20.04 -0.11 -3.55 16 20 C 0.12 2.29 7.29 22.66 0.17 2.45 16 21 F -0.13 -3.01 16.83 44.97 0.76 -2.25 16 22 C -0.09 -0.78 10.01 22.28 0.22 -0.55 16 23 C -0.07 -0.46 10.01 22.35 0.22 -0.24 16 24 C 0.10 1.44 7.26 22.35 0.16 1.61 16 25 F -0.12 -1.87 16.83 44.97 0.76 -1.11 16 26 C -0.04 -0.75 6.36 22.64 0.14 -0.61 16 27 Cl -0.04 -0.92 27.70 -2.72 -0.08 -0.99 16 28 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 29 H -0.01 -0.53 8.07 -2.38 -0.02 -0.55 16 30 H 0.04 2.13 6.90 -2.39 -0.02 2.12 16 31 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.06 1.98 7.80 -2.39 -0.02 1.96 16 34 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.04 1.80 7.90 -2.39 -0.02 1.78 16 36 H 0.04 1.84 8.06 -2.38 -0.02 1.83 16 37 H 0.42 9.61 8.35 -92.71 -0.77 8.84 16 38 H 0.20 0.09 8.06 -2.91 -0.02 0.07 16 39 H 0.21 -0.41 8.06 -2.91 -0.02 -0.43 16 Total: -1.00 -77.13 354.90 3.47 -73.66 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 0.34 Total: 4.77 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 4.08 Total: 15.16 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -4.35 Total: -113.58 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.07 Total: -24.39 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 1.51 Total: -3.36 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -0.99 kcal Total: -77.13 3.47 -73.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028156810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.978 kcal (2) G-P(sol) polarization free energy of solvation -77.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds