Wall clock time and date at job start Wed Apr 1 2020 02:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47215 * 2 1 4 4 C 1.50706 * 109.47124 * 239.99823 * 2 1 3 5 5 O 1.21277 * 120.00010 * 240.00184 * 4 2 1 6 6 N 1.34776 * 119.99614 * 59.99721 * 4 2 1 7 7 C 1.46506 * 119.99648 * 179.97438 * 6 4 2 8 8 H 1.09005 * 110.90964 * 31.10773 * 7 6 4 9 9 C 1.54901 * 111.00790 * 267.20449 * 7 6 4 10 10 N 1.47426 * 104.83395 * 204.91866 * 9 7 6 11 11 C 1.36931 * 125.64840 * 204.16400 * 10 9 7 12 12 H 1.07997 * 120.00331 * 359.97438 * 11 10 9 13 13 C 1.38821 * 119.99880 * 179.97438 * 11 10 9 14 14 N 1.31612 * 119.99788 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99890 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46917 * 60.00047 * 15 13 11 17 17 H 1.48493 * 109.46968 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47014 * 299.99978 * 15 13 11 19 19 C 1.47022 * 108.70097 * 24.12171 * 10 9 7 20 20 C 1.54319 * 107.27284 * 358.94759 * 19 10 9 21 21 H 1.09002 * 110.72434 * 96.34709 * 20 19 10 22 22 O 1.42905 * 110.72085 * 219.44196 * 20 19 10 23 23 C 1.50696 * 109.47055 * 119.99980 * 2 1 3 24 24 C 1.33345 * 125.18970 * 239.99773 * 23 2 1 25 25 C 1.38474 * 114.93202 * 179.97438 * 24 23 2 26 26 C 1.33500 * 114.88453 * 0.02562 * 25 24 23 27 27 Cl 1.73605 * 125.20997 * 179.97438 * 26 25 24 28 28 S 1.75887 * 109.58216 * 359.73358 * 26 25 24 29 29 H 1.09001 * 109.47463 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47299 * 300.00430 * 1 2 3 31 31 H 1.09004 * 109.47305 * 60.00267 * 1 2 3 32 32 H 0.96997 * 120.00115 * 0.02562 * 6 4 2 33 33 H 1.08994 * 110.37485 * 86.07309 * 9 7 6 34 34 H 1.09007 * 110.36530 * 323.75375 * 9 7 6 35 35 H 0.97001 * 119.99714 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.88665 * 239.52435 * 19 10 9 37 37 H 1.09009 * 109.88026 * 118.36315 * 19 10 9 38 38 H 0.96696 * 114.00036 * 298.54440 * 22 20 19 39 39 H 1.08005 * 122.53852 * 359.97438 * 24 23 2 40 40 H 1.08000 * 122.55643 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1955 -0.9404 -3.6508 8 1 2.3070 -2.0087 -3.4651 9 6 3.5264 -0.3206 -4.1447 10 7 3.5794 -0.6377 -5.5834 11 6 4.7171 -0.7211 -6.3409 12 1 5.6817 -0.5468 -5.8875 13 6 4.6306 -1.0296 -7.6916 14 7 3.4552 -1.2425 -8.2440 15 14 6.1826 -1.1427 -8.7251 16 1 7.0697 -2.1975 -8.1722 17 1 5.8217 -1.4836 -10.1245 18 1 6.8903 0.1626 -8.6998 19 6 2.2085 -0.8507 -6.0700 20 6 1.2623 -0.6810 -4.8629 21 1 0.8556 0.3298 -4.8306 22 8 0.2095 -1.6464 -4.9061 23 6 2.0323 -0.7104 1.2304 24 6 2.8022 -0.1645 2.1724 25 6 3.1397 -1.0122 3.2141 26 6 2.6431 -2.2476 3.1165 27 17 2.8971 -3.5223 4.2673 28 16 1.6865 -2.3839 1.6468 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.1493 0.5388 -2.5435 33 1 4.3713 -0.7726 -3.6252 34 1 3.5210 0.7590 -3.9942 35 1 3.3948 -1.4585 -9.1877 36 1 2.1120 -1.8567 -6.4782 37 1 1.9682 -0.1131 -6.8359 38 1 -0.3569 -1.5761 -5.6867 39 1 3.1373 0.8612 2.1265 40 1 3.7574 -0.6978 4.0423 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077968433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:31 Heat of formation + Delta-G solvation = -52.426998 kcal Electronic energy + Delta-G solvation = -25207.617401 eV Core-core repulsion = 21367.888438 eV Total energy + Delta-G solvation = -3839.728963 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24185 -39.64149 -38.80351 -37.59741 -36.66695 -35.61030 -34.84773 -33.47754 -30.26501 -29.39956 -28.66649 -26.51402 -25.64409 -24.25570 -22.40200 -21.98553 -21.41670 -20.52307 -19.22193 -18.61712 -18.28515 -17.66482 -17.33013 -16.84106 -16.47775 -16.03158 -15.75547 -15.56415 -14.87667 -14.70412 -14.54174 -14.45635 -14.32714 -14.19844 -13.79990 -13.70148 -13.32583 -13.16369 -13.11812 -12.85712 -12.74004 -12.69989 -12.64768 -12.30853 -12.13817 -11.97472 -11.89123 -11.59137 -11.53214 -11.08391 -10.78642 -10.75738 -10.15351 -9.53809 -9.43530 -8.97462 -7.89740 -5.26636 -0.18513 0.16056 0.92308 1.25378 1.45047 1.48536 1.54411 1.59995 1.62062 2.12896 2.47745 3.13060 3.31157 3.44342 3.55887 3.70141 3.88712 4.06881 4.07725 4.19943 4.31026 4.36674 4.46355 4.54191 4.55789 4.81652 4.83390 4.85300 4.97503 5.02996 5.11541 5.26161 5.36091 5.39837 5.43687 5.46810 5.65472 6.12942 6.54277 6.86151 7.04094 7.24863 7.68859 8.30894 9.19777 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.002444 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.665403 B =11454.830480 C =12221.509943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.032 4.032 3 H 0.155 0.845 4 C 0.509 3.491 5 O -0.572 6.572 6 N -0.696 5.696 7 C 0.154 3.846 8 H 0.068 0.932 9 C 0.131 3.869 10 N -0.623 5.623 11 C -0.249 4.249 12 H 0.080 0.920 13 C -0.061 4.061 14 N -0.948 5.948 15 Si 0.980 3.020 16 H -0.282 1.282 17 H -0.291 1.291 18 H -0.273 1.273 19 C 0.160 3.840 20 C 0.091 3.909 21 H 0.098 0.902 22 O -0.570 6.570 23 C -0.158 4.158 24 C -0.127 4.127 25 C -0.117 4.117 26 C -0.173 4.173 27 Cl -0.020 7.020 28 S 0.141 5.859 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.418 0.582 33 H 0.031 0.969 34 H 0.047 0.953 35 H 0.250 0.750 36 H 0.019 0.981 37 H 0.027 0.973 38 H 0.396 0.604 39 H 0.178 0.822 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.533 6.972 22.667 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.054 4.054 3 H 0.172 0.828 4 C 0.295 3.705 5 O -0.451 6.451 6 N -0.348 5.348 7 C 0.047 3.953 8 H 0.087 0.913 9 C 0.005 3.995 10 N -0.350 5.350 11 C -0.378 4.378 12 H 0.098 0.902 13 C -0.254 4.254 14 N -0.596 5.596 15 Si 0.807 3.193 16 H -0.208 1.208 17 H -0.217 1.217 18 H -0.199 1.199 19 C 0.034 3.966 20 C 0.031 3.969 21 H 0.115 0.885 22 O -0.377 6.377 23 C -0.276 4.276 24 C -0.157 4.157 25 C -0.149 4.149 26 C -0.316 4.316 27 Cl 0.008 6.992 28 S 0.405 5.595 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.256 0.744 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.246 0.754 39 H 0.195 0.805 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.554 4.735 22.541 24.936 hybrid contribution 1.417 0.760 -0.826 1.808 sum -8.137 5.496 21.715 23.832 Atomic orbital electron populations 1.21910 0.89656 1.02927 1.05482 1.19967 0.99096 1.00771 0.85609 0.82759 1.21176 0.79571 0.84314 0.85392 1.90761 1.39191 1.28060 1.87046 1.45603 1.53181 1.32057 1.03996 1.21698 0.92898 0.96796 0.83881 0.91337 1.21942 0.95408 0.97784 0.84389 1.44508 1.02885 1.82914 1.04727 1.19397 0.86093 1.41166 0.91098 0.90170 1.25642 1.00163 1.01712 0.97911 1.70110 1.23285 1.54683 1.11553 0.85142 0.78589 0.78203 0.77333 1.20775 1.21688 1.19906 1.21655 0.83275 0.98757 0.92893 1.23181 0.87294 0.92486 0.93931 0.88489 1.86429 1.44236 1.57822 1.49244 1.24237 1.06006 0.96319 1.01079 1.20259 0.99267 1.02899 0.93272 1.20445 1.01953 0.90889 1.01637 1.25472 1.11516 0.95375 0.99274 1.98351 1.95554 1.48782 1.56487 1.84724 1.48894 1.11901 1.13937 0.93558 0.88583 0.89067 0.74355 0.95106 0.93576 0.94121 0.96319 0.95479 0.75428 0.80459 0.81422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.01 71.98 0.65 -1.06 16 2 C -0.03 -0.52 3.10 -12.29 -0.04 -0.56 16 3 H 0.16 1.45 8.08 -2.39 -0.02 1.43 16 4 C 0.51 13.59 7.13 87.66 0.62 14.22 16 5 O -0.57 -21.31 14.91 -3.02 -0.05 -21.36 16 6 N -0.70 -17.53 5.09 -435.96 -2.22 -19.75 16 7 C 0.15 5.52 3.15 46.38 0.15 5.67 16 8 H 0.07 3.01 7.54 -2.38 -0.02 2.99 16 9 C 0.13 5.47 6.93 86.85 0.60 6.07 16 10 N -0.62 -31.99 3.39 -692.00 -2.35 -34.34 16 11 C -0.25 -14.07 10.28 84.04 0.86 -13.21 16 12 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 13 C -0.06 -3.45 5.49 84.87 0.47 -2.99 16 14 N -0.95 -55.89 10.31 21.65 0.22 -55.66 16 15 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 17 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 C 0.16 7.57 5.14 86.73 0.45 8.02 16 20 C 0.09 3.12 3.98 31.78 0.13 3.25 16 21 H 0.10 2.62 8.01 -2.39 -0.02 2.61 16 22 O -0.57 -18.30 13.39 -148.98 -2.00 -20.30 16 23 C -0.16 -3.17 4.60 24.58 0.11 -3.06 16 24 C -0.13 -2.11 10.01 21.22 0.21 -1.90 16 25 C -0.12 -2.09 10.13 21.25 0.22 -1.88 16 26 C -0.17 -3.76 7.10 66.75 0.47 -3.29 16 27 Cl -0.02 -0.41 29.29 -2.72 -0.08 -0.49 16 28 S 0.14 3.42 22.18 -56.49 -1.25 2.16 16 29 H 0.05 0.75 7.99 -2.39 -0.02 0.73 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.76 7.56 -2.38 -0.02 0.74 16 32 H 0.42 7.01 7.99 -92.71 -0.74 6.27 16 33 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 36 H 0.02 1.02 7.29 -2.39 -0.02 1.01 16 37 H 0.03 1.38 7.51 -2.38 -0.02 1.36 16 38 H 0.40 9.50 9.11 -74.06 -0.67 8.83 16 39 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 40 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -76.52 363.24 -1.11 -77.63 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -0.32 Total: 15.10 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 4.90 Total: 9.28 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -4.34 Total: -109.75 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -2.04 Total: -41.66 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.25 Total: 2.16 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -76.52 -1.11 -77.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077968433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.203 kcal (2) G-P(sol) polarization free energy of solvation -76.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds