Wall clock time and date at job start Wed Apr 1 2020 03:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99917 * 2 1 4 4 H 1.48498 * 109.46813 * 239.99800 * 3 2 1 5 5 H 1.48503 * 109.46685 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46954 * 119.99603 * 3 2 1 7 7 C 1.38808 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99802 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99844 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99779 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.84929 * 23.80742 * 10 9 7 12 12 C 1.53780 * 113.61465 * 154.99895 * 10 9 7 13 13 C 1.53779 * 87.08393 * 140.06594 * 12 10 9 14 14 H 1.09001 * 113.61707 * 89.19450 * 13 12 10 15 15 C 1.52997 * 113.61941 * 220.02336 * 13 12 10 16 16 N 1.46494 * 109.47404 * 184.99902 * 15 13 12 17 17 C 1.34779 * 120.00176 * 179.97438 * 16 15 13 18 18 O 1.21578 * 119.99590 * 0.02562 * 17 16 15 19 19 C 1.47633 * 119.99944 * 179.97438 * 17 16 15 20 20 C 1.39708 * 120.14527 * 0.02562 * 19 17 16 21 21 C 1.37994 * 119.86292 * 179.97438 * 20 19 17 22 22 F 1.35096 * 119.92054 * 180.02562 * 21 20 19 23 23 C 1.38805 * 120.15584 * 359.97438 * 21 20 19 24 24 Cl 1.73602 * 119.85243 * 180.02562 * 23 21 20 25 25 C 1.38318 * 120.29063 * 0.04676 * 23 21 20 26 26 C 1.38260 * 120.13680 * 359.95575 * 25 23 21 27 27 F 1.35095 * 120.08214 * 180.29589 * 26 25 23 28 28 C 1.53775 * 113.69285 * 252.53762 * 10 9 7 29 29 H 0.97001 * 120.00426 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00287 * 359.97438 * 9 7 2 31 31 H 1.09001 * 113.61377 * 25.51766 * 12 10 9 32 32 H 1.09007 * 113.69070 * 254.62378 * 12 10 9 33 33 H 1.09005 * 109.47152 * 64.99401 * 15 13 12 34 34 H 1.09002 * 109.46463 * 304.99984 * 15 13 12 35 35 H 0.97001 * 120.00033 * 359.97438 * 16 15 13 36 36 H 1.07993 * 120.06699 * 359.95225 * 20 19 17 37 37 H 1.08000 * 119.93616 * 179.97438 * 25 23 21 38 38 H 1.08994 * 113.61816 * 105.46053 * 28 10 9 39 39 H 1.08999 * 113.61346 * 334.55329 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 1 3.0656 -3.5638 0.4049 12 6 1.2602 -4.8287 0.5950 13 6 1.8497 -5.6981 -0.5282 14 1 2.7996 -6.1643 -0.2666 15 6 0.8479 -6.6867 -1.1281 16 7 1.5307 -7.5450 -2.0993 17 6 0.8419 -8.4984 -2.7575 18 8 -0.3462 -8.6456 -2.5455 19 6 1.5299 -9.3630 -3.7366 20 6 2.8949 -9.1959 -3.9829 21 6 3.5322 -10.0077 -4.8989 22 9 4.8523 -9.8475 -5.1375 23 6 2.8205 -10.9890 -5.5749 24 17 3.6303 -12.0063 -6.7252 25 6 1.4687 -11.1597 -5.3364 26 6 0.8181 -10.3531 -4.4212 27 9 -0.5009 -10.5247 -4.1847 28 6 2.0011 -4.4031 -1.3438 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0002 31 1 0.1798 -4.7008 0.5267 32 1 1.5897 -5.1211 1.5921 33 1 0.0495 -6.1373 -1.6269 34 1 0.4246 -7.3018 -0.3340 35 1 2.4785 -7.4273 -2.2686 36 1 3.4500 -8.4329 -3.4576 37 1 0.9204 -11.9248 -5.8659 38 1 2.9297 -4.3511 -1.9120 39 1 1.1233 -4.1590 -1.9421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086183513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:24 Heat of formation + Delta-G solvation = -71.845299 kcal Electronic energy + Delta-G solvation = -26172.275972 eV Core-core repulsion = 21777.864581 eV Total energy + Delta-G solvation = -4394.411391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.59488 -49.41079 -40.51868 -39.09851 -38.38855 -37.19156 -34.93929 -33.41912 -32.15655 -30.76348 -30.25156 -27.57620 -25.16146 -24.93326 -23.98985 -23.33636 -21.21540 -21.13894 -19.33003 -18.79087 -18.15448 -18.00269 -17.10427 -16.86720 -16.68195 -16.04043 -15.96794 -15.46001 -15.33973 -15.06885 -14.87884 -14.71300 -14.37252 -13.92673 -13.56826 -13.52499 -13.37262 -13.33029 -12.97366 -12.44110 -12.01353 -11.91254 -11.84458 -11.76647 -11.46054 -11.28166 -10.85441 -10.61010 -10.42376 -10.21630 -10.06401 -9.90954 -9.88015 -9.55435 -9.33137 -9.15176 -8.89690 -6.99678 -5.80707 -3.09933 -0.28531 0.15972 1.15547 2.05134 2.72028 2.96169 3.23723 3.41376 3.42443 3.45909 3.47090 3.70878 4.02045 4.23824 4.55291 4.57478 4.75336 4.87857 4.89195 4.93126 5.10672 5.15980 5.20272 5.41784 5.43619 5.73283 5.75407 5.81292 5.86876 6.04862 6.09464 6.23913 6.29311 6.34706 6.53550 6.76346 7.05845 7.16263 7.65881 7.85071 8.37714 9.48725 10.06636 10.40663 11.41469 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.001917 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.903664 B =14600.803820 C =15494.451871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.142 4.142 13 C -0.129 4.129 14 H 0.089 0.911 15 C 0.131 3.869 16 N -0.714 5.714 17 C 0.554 3.446 18 O -0.516 6.516 19 C -0.136 4.136 20 C -0.081 4.081 21 C 0.096 3.904 22 F -0.116 7.116 23 C -0.027 4.027 24 Cl -0.027 7.027 25 C -0.129 4.129 26 C 0.166 3.834 27 F -0.100 7.100 28 C -0.162 4.162 29 H 0.257 0.743 30 H 0.385 0.615 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.400 0.600 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.054 0.946 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.305 -26.924 -10.957 29.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.182 4.182 13 C -0.148 4.148 14 H 0.107 0.893 15 C 0.009 3.991 16 N -0.366 5.366 17 C 0.339 3.661 18 O -0.393 6.393 19 C -0.140 4.140 20 C -0.101 4.101 21 C 0.076 3.924 22 F -0.095 7.095 23 C -0.055 4.055 24 Cl 0.002 6.998 25 C -0.148 4.148 26 C 0.145 3.855 27 F -0.078 7.078 28 C -0.203 4.203 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.073 0.927 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.603 -26.890 -10.859 29.742 hybrid contribution 0.752 0.833 -0.327 1.170 sum 7.356 -26.057 -11.186 29.295 Atomic orbital electron populations 1.69648 1.05137 1.25913 1.57255 1.24779 0.95535 0.97824 1.02761 0.86262 0.78534 0.83483 0.77847 1.21241 1.21674 1.21222 1.19248 0.91026 0.84241 1.43195 0.91149 1.42402 1.05767 0.99863 1.86981 1.21506 0.95336 0.85069 0.92701 0.90653 1.23454 1.01115 0.96923 0.96665 1.22663 0.98365 0.94363 0.99405 0.89269 1.21554 0.95425 0.91476 0.90660 1.45952 1.13256 1.34729 1.42622 1.17739 0.86732 0.80707 0.80948 1.90891 1.14224 1.69525 1.64630 1.20097 0.93735 0.99152 1.01030 1.21184 0.93257 0.98961 0.96671 1.17115 0.79214 0.97346 0.98770 1.91604 1.30080 1.94638 1.93149 1.20880 0.93154 0.95322 0.96171 1.98434 1.78588 1.65912 1.56846 1.20898 0.92568 1.01726 0.99628 1.17391 0.79102 0.94273 0.94776 1.91668 1.29729 1.93864 1.92498 1.23974 1.01429 0.94863 1.00053 0.93365 0.78044 0.90030 0.91910 0.90701 0.91244 0.76497 0.82145 0.81778 0.92723 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.69 9.97 -15.06 -0.15 -6.84 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -17.35 5.40 -52.64 -0.28 -17.64 16 10 C 0.17 3.07 4.48 -67.12 -0.30 2.77 16 11 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 12 C -0.14 -2.12 7.39 -25.92 -0.19 -2.31 16 13 C -0.13 -1.56 3.75 -89.81 -0.34 -1.89 16 14 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 15 C 0.13 1.56 5.51 -4.05 -0.02 1.54 16 16 N -0.71 -7.11 5.51 -61.32 -0.34 -7.45 16 17 C 0.55 6.50 7.77 -12.42 -0.10 6.40 16 18 O -0.52 -8.14 15.33 5.30 0.08 -8.06 16 19 C -0.14 -1.22 5.88 -104.91 -0.62 -1.84 16 20 C -0.08 -0.54 9.51 -39.12 -0.37 -0.91 16 21 C 0.10 0.69 7.26 -39.46 -0.29 0.40 16 22 F -0.12 -0.91 16.82 2.25 0.04 -0.88 16 23 C -0.03 -0.19 6.33 -39.34 -0.25 -0.43 16 24 Cl -0.03 -0.18 28.60 -51.86 -1.48 -1.66 16 25 C -0.13 -0.85 9.79 -39.54 -0.39 -1.24 16 26 C 0.17 1.50 7.28 -38.97 -0.28 1.21 16 27 F -0.10 -1.14 15.54 2.25 0.04 -1.10 16 28 C -0.16 -2.50 7.43 -25.92 -0.19 -2.69 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.39 10.04 7.92 -40.82 -0.32 9.71 16 31 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 32 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.40 2.83 6.50 -40.82 -0.27 2.56 16 36 H 0.16 0.69 6.40 -52.49 -0.34 0.35 16 37 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.37 7.90 -51.93 -0.41 0.96 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -32.11 358.50 -8.67 -40.79 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -4.24 Total: 7.00 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -3.58 Total: -6.31 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.10 Total: -52.23 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.08 Total: -8.06 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.07 Total: -1.98 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.48 Total: -1.66 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.11 -8.67 -40.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086183513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.059 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds