Wall clock time and date at job start Wed Apr 1 2020 03:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99743 * 2 1 4 4 H 1.48505 * 109.46790 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47145 * 299.99544 * 3 2 1 6 6 H 1.48504 * 109.47100 * 59.99640 * 3 2 1 7 7 C 1.38809 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00232 * 180.02562 * 9 7 2 11 11 C 1.53780 * 113.61838 * 154.99980 * 10 9 7 12 12 C 1.53782 * 87.08022 * 89.11197 * 11 10 9 13 13 C 1.53003 * 113.61113 * 139.98103 * 12 11 10 14 14 N 1.46498 * 109.46870 * 176.53218 * 13 12 11 15 15 C 1.34778 * 120.00023 * 180.02562 * 14 13 12 16 16 O 1.21583 * 120.00068 * 0.02562 * 15 14 13 17 17 C 1.47638 * 120.00362 * 179.97438 * 15 14 13 18 18 C 1.39703 * 120.13798 * 359.97438 * 17 15 14 19 19 C 1.38001 * 119.85898 * 180.02562 * 18 17 15 20 20 F 1.35097 * 119.91719 * 179.97438 * 19 18 17 21 21 C 1.38795 * 120.15891 * 0.02562 * 19 18 17 22 22 Cl 1.73602 * 119.85734 * 179.97438 * 21 19 18 23 23 C 1.38329 * 120.29067 * 359.97438 * 21 19 18 24 24 C 1.38265 * 120.12913 * 0.02562 * 23 21 19 25 25 F 1.35103 * 120.07346 * 180.02562 * 24 23 21 26 26 C 1.53779 * 87.17418 * 25.39320 * 12 11 10 27 27 H 0.97001 * 120.00586 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00239 * 359.97438 * 9 7 2 29 29 H 1.08998 * 112.84761 * 23.79943 * 10 9 7 30 30 H 1.08997 * 113.60918 * 334.57036 * 11 10 9 31 31 H 1.09000 * 113.61293 * 203.66208 * 11 10 9 32 32 H 1.08997 * 113.61676 * 270.80157 * 12 11 10 33 33 H 1.08999 * 109.47238 * 56.53213 * 13 12 11 34 34 H 1.09003 * 109.47394 * 296.52623 * 13 12 11 35 35 H 0.97000 * 120.00572 * 359.97438 * 14 13 12 36 36 H 1.07995 * 120.06875 * 359.97438 * 18 17 15 37 37 H 1.07994 * 119.93543 * 180.27585 * 23 21 19 38 38 H 1.09001 * 113.62112 * 89.15424 * 26 12 11 39 39 H 1.09002 * 113.61747 * 220.05828 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.2598 -4.8286 0.5970 12 6 0.7211 -5.0794 -0.8213 13 6 0.6206 -6.5621 -1.1853 14 7 0.0231 -6.6988 -2.5159 15 6 -0.1653 -7.9229 -3.0476 16 8 0.1602 -8.9137 -2.4227 17 6 -0.7680 -8.0607 -4.3883 18 6 -1.1446 -6.9243 -5.1082 19 6 -1.7079 -7.0598 -6.3607 20 9 -2.0730 -5.9617 -7.0577 21 6 -1.9012 -8.3217 -6.9055 22 17 -2.6112 -8.4831 -8.4815 23 6 -1.5307 -9.4513 -6.1982 24 6 -0.9652 -9.3293 -4.9424 25 9 -0.6033 -10.4333 -4.2528 26 6 1.9988 -4.4021 -1.3442 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 3.0653 -3.5636 0.4077 30 1 0.4929 -4.5184 1.3067 31 1 1.8864 -5.6362 0.9753 32 1 -0.1902 -4.5255 -1.0466 33 1 -0.0028 -7.0747 -0.4527 34 1 1.6170 -7.0041 -1.1874 35 1 -0.2377 -5.9084 -3.0141 36 1 -0.9960 -5.9418 -4.6851 37 1 -1.6796 -10.4301 -6.6294 38 1 2.8279 -5.0929 -1.4976 39 1 1.8278 -3.7481 -2.1993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091208040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:41 Heat of formation + Delta-G solvation = -71.415756 kcal Electronic energy + Delta-G solvation = -26389.303086 eV Core-core repulsion = 21994.910321 eV Total energy + Delta-G solvation = -4394.392764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -49.50800 -49.37526 -40.47348 -39.07879 -38.40174 -37.13786 -34.90466 -33.34540 -32.10690 -30.70544 -30.16387 -27.56678 -25.14491 -24.88023 -23.87217 -23.31294 -21.80569 -21.06993 -19.10926 -18.38423 -18.07087 -17.95824 -17.33920 -16.77994 -16.62106 -15.96147 -15.90749 -15.41301 -15.28097 -14.99918 -14.92884 -14.45099 -14.19313 -14.13708 -13.59739 -13.46226 -13.32337 -13.26934 -12.95053 -12.40738 -12.33586 -11.99502 -11.85146 -11.70939 -11.47660 -11.09840 -10.90216 -10.57390 -10.39791 -10.16989 -9.94779 -9.85230 -9.74884 -9.56774 -9.28255 -9.10817 -8.94130 -7.05400 -5.85695 -3.14898 -0.23182 0.21971 1.21069 2.09947 2.77623 3.00227 3.30610 3.38322 3.44566 3.46514 3.47405 3.77511 4.08045 4.29196 4.51504 4.63854 4.81292 4.95332 4.96150 4.99874 5.12454 5.19212 5.26691 5.40093 5.52680 5.61777 5.77545 5.85954 5.87243 6.01475 6.14576 6.21410 6.30835 6.51387 6.67223 6.81739 6.97272 7.21544 7.65171 7.88494 8.33420 9.44370 10.01278 10.35376 11.36726 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.002247 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.051904 B =12459.626598 C =14247.748064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.147 4.147 12 C -0.121 4.121 13 C 0.131 3.869 14 N -0.713 5.713 15 C 0.555 3.445 16 O -0.521 6.521 17 C -0.136 4.136 18 C -0.080 4.080 19 C 0.098 3.902 20 F -0.115 7.115 21 C -0.027 4.027 22 Cl -0.027 7.027 23 C -0.129 4.129 24 C 0.165 3.835 25 F -0.101 7.101 26 C -0.169 4.169 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.402 0.598 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.068 0.932 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 -19.965 -14.337 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.140 4.140 13 C 0.008 3.992 14 N -0.364 5.364 15 C 0.340 3.660 16 O -0.397 6.397 17 C -0.141 4.141 18 C -0.100 4.100 19 C 0.077 3.923 20 F -0.093 7.093 21 C -0.055 4.055 22 Cl 0.002 6.998 23 C -0.149 4.149 24 C 0.143 3.857 25 F -0.079 7.079 26 C -0.211 4.211 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.238 0.762 36 H 0.180 0.820 37 H 0.182 0.818 38 H 0.087 0.913 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.396 -20.497 -13.972 25.193 hybrid contribution -0.200 1.314 -0.564 1.444 sum -4.597 -19.183 -14.536 24.503 Atomic orbital electron populations 1.69663 1.05140 1.25730 1.57487 1.24766 0.95548 0.97820 1.02736 0.86105 0.78830 0.83948 0.77221 1.20481 1.21818 1.21806 1.19330 0.91158 0.83935 1.42920 0.90925 1.42179 1.05678 0.99452 1.87115 1.21088 0.95159 0.85581 0.92665 1.23441 1.00526 0.99743 0.94964 1.22737 0.99716 0.92663 0.98887 1.21588 0.98268 0.97424 0.81926 1.45974 1.62899 1.07438 1.20124 1.17744 0.79379 0.84184 0.84716 1.90872 1.50327 1.37063 1.61480 1.20083 1.04754 0.92144 0.97080 1.21238 0.96621 0.99965 0.92185 1.17130 1.01752 0.82054 0.91360 1.91615 1.89114 1.50671 1.77940 1.20883 1.01542 0.92903 0.90214 1.98433 1.81321 1.97996 1.22054 1.20882 1.01098 0.99627 0.93266 1.17375 0.96103 0.82515 0.89675 1.91660 1.88279 1.49794 1.78148 1.23934 0.95604 0.99665 1.01855 0.93456 0.78126 0.91891 0.91225 0.90371 0.88790 0.91336 0.91089 0.76217 0.82006 0.81826 0.91325 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.23 13.06 55.49 0.72 -26.51 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.48 9.97 -15.06 -0.15 -6.63 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -16.74 5.31 -52.55 -0.28 -17.02 16 10 C 0.17 3.10 4.57 -67.02 -0.31 2.79 16 11 C -0.15 -2.20 7.39 -25.92 -0.19 -2.39 16 12 C -0.12 -1.65 3.62 -89.81 -0.33 -1.98 16 13 C 0.13 1.58 5.50 -4.04 -0.02 1.56 16 14 N -0.71 -7.78 5.51 -61.31 -0.34 -8.12 16 15 C 0.55 6.77 7.77 -12.42 -0.10 6.68 16 16 O -0.52 -8.19 15.34 5.29 0.08 -8.11 16 17 C -0.14 -1.33 5.88 -104.92 -0.62 -1.94 16 18 C -0.08 -0.64 9.51 -39.12 -0.37 -1.01 16 19 C 0.10 0.81 7.26 -39.46 -0.29 0.52 16 20 F -0.12 -1.07 16.82 2.25 0.04 -1.03 16 21 C -0.03 -0.21 6.33 -39.34 -0.25 -0.46 16 22 Cl -0.03 -0.20 28.60 -51.86 -1.48 -1.68 16 23 C -0.13 -0.92 9.79 -39.54 -0.39 -1.31 16 24 C 0.16 1.56 7.28 -38.98 -0.28 1.27 16 25 F -0.10 -1.17 15.54 2.25 0.04 -1.13 16 26 C -0.17 -2.61 7.44 -25.83 -0.19 -2.81 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.38 9.65 7.90 -40.82 -0.32 9.32 16 29 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 35 H 0.40 3.60 6.50 -40.82 -0.27 3.33 16 36 H 0.16 0.99 6.40 -52.49 -0.34 0.65 16 37 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -31.08 358.41 -8.66 -39.74 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.24 Total: 7.84 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -3.58 Total: -6.16 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.11 Total: -51.64 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.08 Total: -8.11 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.07 Total: -2.16 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.48 Total: -1.68 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.08 -8.66 -39.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091208040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.675 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds