Wall clock time and date at job start Wed Apr 1 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99743 * 2 1 4 4 H 1.48505 * 109.46790 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47145 * 299.99544 * 3 2 1 6 6 H 1.48504 * 109.47100 * 59.99640 * 3 2 1 7 7 C 1.38809 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00232 * 180.02562 * 9 7 2 11 11 C 1.53780 * 113.61838 * 154.99980 * 10 9 7 12 12 C 1.53782 * 87.08022 * 89.11197 * 11 10 9 13 13 C 1.53003 * 113.61113 * 139.98103 * 12 11 10 14 14 N 1.46498 * 109.46870 * 176.53218 * 13 12 11 15 15 C 1.34778 * 120.00023 * 180.02562 * 14 13 12 16 16 O 1.21583 * 120.00068 * 0.02562 * 15 14 13 17 17 C 1.47638 * 120.00362 * 179.97438 * 15 14 13 18 18 C 1.39703 * 120.13798 * 359.97438 * 17 15 14 19 19 C 1.38001 * 119.85898 * 180.02562 * 18 17 15 20 20 F 1.35097 * 119.91719 * 179.97438 * 19 18 17 21 21 C 1.38795 * 120.15891 * 0.02562 * 19 18 17 22 22 Cl 1.73602 * 119.85734 * 179.97438 * 21 19 18 23 23 C 1.38329 * 120.29067 * 359.97438 * 21 19 18 24 24 C 1.38265 * 120.12913 * 0.02562 * 23 21 19 25 25 F 1.35103 * 120.07346 * 180.02562 * 24 23 21 26 26 C 1.53779 * 87.17418 * 25.39320 * 12 11 10 27 27 H 0.97001 * 120.00586 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00239 * 359.97438 * 9 7 2 29 29 H 1.08998 * 112.84761 * 23.79943 * 10 9 7 30 30 H 1.08997 * 113.60918 * 334.57036 * 11 10 9 31 31 H 1.09000 * 113.61293 * 203.66208 * 11 10 9 32 32 H 1.08997 * 113.61676 * 270.80157 * 12 11 10 33 33 H 1.08999 * 109.47238 * 56.53213 * 13 12 11 34 34 H 1.09003 * 109.47394 * 296.52623 * 13 12 11 35 35 H 0.97000 * 120.00572 * 359.97438 * 14 13 12 36 36 H 1.07995 * 120.06875 * 359.97438 * 18 17 15 37 37 H 1.07994 * 119.93543 * 180.27585 * 23 21 19 38 38 H 1.09001 * 113.62112 * 89.15424 * 26 12 11 39 39 H 1.09002 * 113.61747 * 220.05828 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.2598 -4.8286 0.5970 12 6 0.7211 -5.0794 -0.8213 13 6 0.6206 -6.5621 -1.1853 14 7 0.0231 -6.6988 -2.5159 15 6 -0.1653 -7.9229 -3.0476 16 8 0.1602 -8.9137 -2.4227 17 6 -0.7680 -8.0607 -4.3883 18 6 -1.1446 -6.9243 -5.1082 19 6 -1.7079 -7.0598 -6.3607 20 9 -2.0730 -5.9617 -7.0577 21 6 -1.9012 -8.3217 -6.9055 22 17 -2.6112 -8.4831 -8.4815 23 6 -1.5307 -9.4513 -6.1982 24 6 -0.9652 -9.3293 -4.9424 25 9 -0.6033 -10.4333 -4.2528 26 6 1.9988 -4.4021 -1.3442 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 3.0653 -3.5636 0.4077 30 1 0.4929 -4.5184 1.3067 31 1 1.8864 -5.6362 0.9753 32 1 -0.1902 -4.5255 -1.0466 33 1 -0.0028 -7.0747 -0.4527 34 1 1.6170 -7.0041 -1.1874 35 1 -0.2377 -5.9084 -3.0141 36 1 -0.9960 -5.9418 -4.6851 37 1 -1.6796 -10.4301 -6.6294 38 1 2.8279 -5.0929 -1.4976 39 1 1.8278 -3.7481 -2.1993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091208040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:40 Heat of formation + Delta-G solvation = -89.907579 kcal Electronic energy + Delta-G solvation = -26390.104951 eV Core-core repulsion = 21994.910321 eV Total energy + Delta-G solvation = -4395.194630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.19872 -50.16079 -41.36606 -40.13319 -39.41876 -37.76786 -36.11773 -35.04793 -32.92986 -31.93097 -31.36969 -28.77701 -26.41878 -25.95868 -25.34567 -24.19596 -23.02140 -21.96557 -20.12589 -19.53053 -19.23611 -18.82840 -18.66186 -17.63225 -17.35786 -16.97553 -16.68180 -16.65044 -16.32852 -16.06373 -15.75954 -15.70628 -15.56829 -15.04066 -14.75850 -14.69182 -14.50680 -14.04864 -13.99565 -13.73924 -13.27851 -13.07062 -12.95200 -12.90675 -12.67222 -12.51242 -12.30201 -12.12045 -12.04581 -11.61602 -11.46871 -11.21612 -10.92004 -10.78727 -10.50278 -10.18809 -9.87229 -8.98288 -7.94779 -5.22457 -0.93236 -0.41831 0.59593 1.33262 1.48584 1.49318 1.58886 1.89456 2.19047 2.56396 2.64809 2.79265 3.13970 3.33691 3.38669 3.60581 3.73527 3.79327 3.88246 4.05208 4.13473 4.18621 4.32182 4.34362 4.41525 4.55289 4.60759 4.73835 4.77522 4.95752 5.01625 5.11704 5.19069 5.22842 5.36630 5.46206 5.55095 5.68084 6.29391 6.32621 6.97732 7.34664 8.12146 8.34050 9.28589 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.002247 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.051904 B =12459.626598 C =14247.748064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.239 4.239 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.142 3.858 11 C -0.134 4.134 12 C -0.103 4.103 13 C 0.139 3.861 14 N -0.706 5.706 15 C 0.556 3.444 16 O -0.560 6.560 17 C -0.146 4.146 18 C -0.070 4.070 19 C 0.093 3.907 20 F -0.121 7.121 21 C -0.024 4.024 22 Cl -0.021 7.021 23 C -0.113 4.113 24 C 0.153 3.847 25 F -0.116 7.116 26 C -0.154 4.154 27 H 0.251 0.749 28 H 0.375 0.625 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.412 0.588 36 H 0.179 0.821 37 H 0.189 0.811 38 H 0.092 0.908 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -20.879 -15.377 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.223 1.223 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.032 3.968 11 C -0.174 4.174 12 C -0.122 4.122 13 C 0.016 3.984 14 N -0.357 5.357 15 C 0.342 3.658 16 O -0.440 6.440 17 C -0.150 4.150 18 C -0.089 4.089 19 C 0.072 3.928 20 F -0.099 7.099 21 C -0.052 4.052 22 Cl 0.009 6.991 23 C -0.132 4.132 24 C 0.132 3.868 25 F -0.094 7.094 26 C -0.194 4.194 27 H 0.059 0.941 28 H 0.207 0.793 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.250 0.750 36 H 0.196 0.804 37 H 0.206 0.794 38 H 0.110 0.890 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.882 -21.431 -15.030 26.463 hybrid contribution -0.325 1.528 -0.278 1.587 sum -4.208 -19.903 -15.308 25.459 Atomic orbital electron populations 1.69802 1.06485 1.25950 1.59655 1.25510 0.96361 1.00930 1.03908 0.85127 0.78304 0.80101 0.76560 1.19105 1.22132 1.22270 1.19688 0.91498 0.85189 1.40724 0.90612 1.42304 1.05344 1.00538 1.87584 1.21432 0.95043 0.84910 0.95385 1.23344 0.99976 0.98645 0.95394 1.22512 0.98510 0.93513 0.97638 1.21412 0.98598 0.95832 0.82543 1.45886 1.62352 1.07702 1.19768 1.18019 0.78727 0.83730 0.85276 1.90851 1.52198 1.38247 1.62702 1.19895 1.05918 0.92924 0.96271 1.21293 0.95685 1.00098 0.91828 1.17212 1.01981 0.82116 0.91482 1.91605 1.89217 1.51024 1.78057 1.20958 1.01038 0.92808 0.90423 1.98442 1.81140 1.97966 1.21570 1.21022 0.99549 1.00594 0.92083 1.17585 0.96836 0.81994 0.90409 1.91622 1.88620 1.50521 1.78660 1.23749 0.97303 0.99233 0.99139 0.94053 0.79304 0.92327 0.92351 0.87596 0.89720 0.91271 0.90803 0.75017 0.80397 0.79405 0.88975 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.50 13.06 21.65 0.28 -57.22 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.24 -12.80 9.97 84.03 0.84 -11.96 16 8 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 9 N -0.72 -34.26 5.31 -320.16 -1.70 -35.95 16 10 C 0.14 5.14 4.57 45.58 0.21 5.34 16 11 C -0.13 -3.81 7.39 31.12 0.23 -3.58 16 12 C -0.10 -2.64 3.62 -10.27 -0.04 -2.68 16 13 C 0.14 3.10 5.50 86.38 0.47 3.57 16 14 N -0.71 -14.28 5.51 -466.16 -2.57 -16.84 16 15 C 0.56 12.99 7.77 86.73 0.67 13.67 16 16 O -0.56 -17.34 15.34 -3.98 -0.06 -17.40 16 17 C -0.15 -2.66 5.88 -20.06 -0.12 -2.78 16 18 C -0.07 -0.98 9.51 22.57 0.21 -0.77 16 19 C 0.09 1.37 7.26 22.35 0.16 1.53 16 20 F -0.12 -2.05 16.82 44.97 0.76 -1.29 16 21 C -0.02 -0.32 6.33 22.42 0.14 -0.18 16 22 Cl -0.02 -0.26 28.60 -2.72 -0.08 -0.34 16 23 C -0.11 -1.40 9.79 22.30 0.22 -1.18 16 24 C 0.15 2.72 7.28 22.66 0.17 2.88 16 25 F -0.12 -2.63 15.54 44.97 0.70 -1.93 16 26 C -0.15 -4.48 7.44 31.18 0.23 -4.25 16 27 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.37 19.09 7.90 -92.71 -0.73 18.36 16 29 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.11 2.44 8.10 -2.39 -0.02 2.42 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.66 7.88 -2.39 -0.02 1.64 16 35 H 0.41 6.64 6.50 -92.71 -0.60 6.04 16 36 H 0.18 1.82 6.40 -2.91 -0.02 1.81 16 37 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.09 2.29 7.92 -2.39 -0.02 2.27 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -67.07 358.41 3.03 -64.05 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -0.20 Total: 23.94 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 3.87 Total: -4.08 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -3.98 Total: -110.02 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.06 Total: -17.40 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 1.46 Total: -3.22 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -67.07 3.03 -64.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091208040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.860 kcal (2) G-P(sol) polarization free energy of solvation -67.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds