Wall clock time and date at job start Wed Apr 1 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 109.46680 * 2 1 4 4 C 1.46897 * 109.47417 * 239.99682 * 2 1 3 5 5 C 1.46900 * 109.46824 * 119.99667 * 2 1 3 6 6 C 1.52994 * 109.47092 * 62.02523 * 5 2 1 7 7 H 1.09001 * 109.47466 * 51.54854 * 6 5 2 8 8 C 1.50703 * 109.47179 * 171.55185 * 6 5 2 9 9 H 1.08004 * 119.99902 * 245.70842 * 8 6 5 10 10 C 1.37875 * 120.00026 * 65.70350 * 8 6 5 11 11 N 1.31510 * 120.00316 * 6.30602 * 10 8 6 12 12 Si 1.86798 * 119.99903 * 186.29729 * 10 8 6 13 13 H 1.48507 * 109.47458 * 270.00560 * 12 10 8 14 14 H 1.48505 * 109.47092 * 30.00098 * 12 10 8 15 15 H 1.48500 * 109.47247 * 150.00592 * 12 10 8 16 16 O 1.42904 * 109.46809 * 291.54758 * 6 5 2 17 17 C 1.35699 * 116.99877 * 150.00345 * 16 6 5 18 18 C 1.39259 * 120.13756 * 179.72488 * 17 16 6 19 19 C 1.38641 * 117.91585 * 179.73524 * 18 17 16 20 20 C 1.38758 * 118.02303 * 0.52877 * 19 18 17 21 21 C 1.50703 * 120.01538 * 179.74933 * 20 19 18 22 22 Br 1.96597 * 109.46922 * 89.97715 * 21 20 19 23 23 N 1.31822 * 119.97198 * 359.72329 * 20 19 18 24 24 N 1.28349 * 122.26000 * 0.02562 * 23 20 19 25 25 H 1.08994 * 109.47306 * 287.38148 * 1 2 3 26 26 H 1.09004 * 109.47046 * 47.38124 * 1 2 3 27 27 H 1.08996 * 109.46859 * 167.37849 * 1 2 3 28 28 H 1.09009 * 109.46717 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47558 * 299.99146 * 3 2 1 30 30 H 1.08996 * 109.47349 * 60.00206 * 3 2 1 31 31 H 1.08994 * 109.47299 * 300.00265 * 4 2 1 32 32 H 1.09008 * 109.46968 * 60.00099 * 4 2 1 33 33 H 1.09002 * 109.46880 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47166 * 302.02219 * 5 2 1 35 35 H 1.09001 * 109.46922 * 182.02624 * 5 2 1 36 36 H 0.97006 * 119.99460 * 354.43497 * 11 10 8 37 37 H 1.07995 * 121.04458 * 359.97438 * 18 17 16 38 38 H 1.08002 * 120.99101 * 180.27846 * 19 18 17 39 39 H 1.09003 * 109.46881 * 209.97306 * 21 20 19 40 40 H 1.08991 * 109.47088 * 329.97384 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9588 -0.6925 -1.1993 5 6 1.9586 -0.6924 1.1995 6 6 1.4907 -2.1488 1.1743 7 1 1.7546 -2.5989 0.2173 8 6 2.1596 -2.9108 2.2893 9 1 2.8584 -3.7016 2.0595 10 6 1.8796 -2.5983 3.6026 11 7 0.9393 -1.7231 3.8843 12 14 2.8357 -3.4184 4.9820 13 1 2.1425 -4.6665 5.3909 14 1 4.2050 -3.7450 4.5091 15 1 2.9196 -2.4959 6.1427 16 8 0.0731 -2.1967 1.3484 17 6 -0.5853 -3.2278 0.7612 18 6 -1.9669 -3.3412 0.8936 19 6 -2.5932 -4.4095 0.2700 20 6 -1.8042 -5.3051 -0.4375 21 6 -2.4375 -6.4855 -1.1279 22 35 -2.9355 -5.9822 -2.9619 23 7 -0.5004 -5.1228 -0.5060 24 7 0.0838 -4.1329 0.0652 25 1 -0.3633 0.3070 0.9807 26 1 -0.3633 0.6959 -0.7563 27 1 -0.3633 -1.0028 -0.2245 28 1 3.0487 1.3850 0.0005 29 1 1.5954 1.8988 -0.8900 30 1 1.5953 1.8988 0.8900 31 1 1.5955 -1.7201 -1.1994 32 1 1.5954 -0.1787 -2.0894 33 1 3.0488 -0.6921 -1.1995 34 1 1.5660 -0.1999 2.0891 35 1 3.0480 -0.6611 1.2179 36 1 0.4985 -1.2379 3.1693 37 1 -2.5333 -2.6176 1.4609 38 1 -3.6629 -4.5428 0.3364 39 1 -1.7279 -7.3124 -1.1581 40 1 -3.3288 -6.7914 -0.5803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223751857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:42 Heat of formation + Delta-G solvation = 130.852177 kcal Electronic energy + Delta-G solvation = -23546.134144 eV Core-core repulsion = 20141.235128 eV Total energy + Delta-G solvation = -3404.899016 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 344.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.66432 -42.04358 -39.37619 -35.36576 -34.82556 -33.55042 -31.76193 -31.15348 -30.55945 -30.49884 -27.84773 -27.75639 -25.77926 -25.05634 -23.72523 -22.81437 -19.87444 -19.58942 -18.80805 -18.71680 -18.22469 -17.94354 -16.96975 -16.69160 -15.64976 -15.44999 -15.32620 -15.02387 -14.99174 -14.85246 -14.63673 -14.38819 -14.29805 -14.19913 -14.08858 -13.98554 -13.88590 -13.64691 -13.38719 -12.60670 -12.35947 -12.06160 -11.95799 -11.31653 -11.24390 -10.98748 -10.90325 -10.58472 -10.46698 -10.11406 -9.62123 -8.06277 -6.03037 -0.21492 -0.16885 0.04202 0.83110 1.85646 2.05071 2.08671 2.16864 2.30504 2.35779 2.46718 2.66446 2.89998 2.98103 3.00650 3.09747 3.21678 3.29442 3.32202 3.39446 3.42771 3.49051 3.56817 3.61868 3.62878 3.76252 3.84707 3.87399 3.90791 3.98589 4.05682 4.25801 4.42766 4.57943 4.74608 4.92535 5.11116 5.91812 6.25563 6.74159 7.09517 7.75007 7.77613 9.26646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.274 5.274 3 C -0.043 4.043 4 C -0.048 4.048 5 C -0.006 4.006 6 C 0.172 3.828 7 H 0.077 0.923 8 C -0.618 4.618 9 H 0.077 0.923 10 C 0.046 3.954 11 N -0.863 5.863 12 Si 1.063 2.937 13 H -0.279 1.279 14 H -0.279 1.279 15 H -0.276 1.276 16 O -0.309 6.309 17 C 0.287 3.713 18 C -0.143 4.143 19 C -0.072 4.072 20 C 0.015 3.985 21 C -0.019 4.019 22 Br -0.139 7.139 23 N -0.187 5.187 24 N -0.286 5.286 25 H 0.121 0.879 26 H 0.107 0.893 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.274 0.726 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 10.802 -11.085 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N 0.067 4.933 3 C -0.184 4.184 4 C -0.190 4.190 5 C -0.125 4.125 6 C 0.119 3.881 7 H 0.095 0.905 8 C -0.655 4.655 9 H 0.095 0.905 10 C -0.165 4.165 11 N -0.497 5.497 12 Si 0.888 3.112 13 H -0.205 1.205 14 H -0.204 1.204 15 H -0.201 1.201 16 O -0.214 6.214 17 C 0.103 3.897 18 C -0.173 4.173 19 C -0.100 4.100 20 C -0.133 4.133 21 C -0.136 4.136 22 Br -0.059 7.059 23 N -0.032 5.032 24 N -0.143 5.143 25 H 0.140 0.860 26 H 0.126 0.874 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.087 0.913 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.141 0.859 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.127 10.651 -10.426 14.905 hybrid contribution -1.339 0.372 -0.519 1.484 sum -1.466 11.023 -10.945 15.603 Atomic orbital electron populations 1.24227 0.76740 1.08639 1.08492 1.46450 1.15359 1.14831 1.16617 1.24068 1.05272 0.80716 1.08359 1.24139 1.05419 1.02623 0.86787 1.25096 1.04435 0.96934 0.86017 1.20647 0.76675 0.89115 1.01701 0.90502 1.22123 1.30287 1.22008 0.91050 0.90455 1.26114 0.94719 0.95608 1.00101 1.70993 1.18819 1.22640 1.37207 0.83543 0.75791 0.76796 0.75107 1.20476 1.20403 1.20054 1.86423 1.25777 1.41089 1.68150 1.21373 0.89976 0.88933 0.89467 1.21630 0.92850 1.00722 1.02085 1.22083 1.02028 0.92267 0.93637 1.22108 0.92670 0.98310 1.00185 1.23298 1.04267 0.97080 0.88934 1.97470 1.93222 1.94023 1.21174 1.72731 1.08446 1.10853 1.11136 1.73121 1.30287 1.00363 1.10546 0.86008 0.87430 0.86430 0.86472 0.86873 0.86447 0.86034 0.86862 0.86168 0.85005 0.84605 0.91265 0.82717 0.82748 0.85911 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.38 7.01 60.07 0.42 0.80 16 2 N -0.27 2.81 0.05 -395.63 -0.02 2.79 16 3 C -0.04 0.56 7.99 60.07 0.48 1.04 16 4 C -0.05 0.52 7.60 60.06 0.46 0.98 16 5 C -0.01 0.03 3.47 -3.83 -0.01 0.01 16 6 C 0.17 0.22 1.62 -27.88 -0.05 0.18 16 7 H 0.08 0.04 4.67 -51.93 -0.24 -0.20 16 8 C -0.62 -4.75 8.86 -34.44 -0.31 -5.06 16 9 H 0.08 0.76 7.82 -52.48 -0.41 0.35 16 10 C 0.05 0.45 5.24 -17.82 -0.09 0.35 16 11 N -0.86 -8.77 13.06 55.43 0.72 -8.05 16 12 Si 1.06 9.55 29.91 -169.99 -5.08 4.47 16 13 H -0.28 -2.83 7.11 56.52 0.40 -2.43 16 14 H -0.28 -2.34 7.11 56.52 0.40 -1.94 16 15 H -0.28 -2.66 7.11 56.52 0.40 -2.26 16 16 O -0.31 -0.55 5.08 -18.80 -0.10 -0.65 16 17 C 0.29 0.75 6.61 -16.95 -0.11 0.64 16 18 C -0.14 -0.08 10.16 -39.05 -0.40 -0.48 16 19 C -0.07 0.02 9.87 -39.24 -0.39 -0.36 16 20 C 0.01 0.02 6.18 -82.40 -0.51 -0.49 16 21 C -0.02 0.02 6.91 36.01 0.25 0.27 16 22 Br -0.14 -0.07 33.92 -68.01 -2.31 -2.38 16 23 N -0.19 -0.75 11.42 33.61 0.38 -0.37 16 24 N -0.29 -1.23 9.84 30.50 0.30 -0.93 16 25 H 0.12 -1.04 7.87 -51.93 -0.41 -1.45 16 26 H 0.11 -1.35 7.94 -51.93 -0.41 -1.76 16 27 H 0.12 -0.82 5.18 -51.93 -0.27 -1.09 16 28 H 0.12 -1.60 8.14 -51.92 -0.42 -2.03 16 29 H 0.11 -1.69 8.05 -51.93 -0.42 -2.11 16 30 H 0.12 -1.50 8.14 -51.93 -0.42 -1.92 16 31 H 0.12 -0.95 5.84 -51.93 -0.30 -1.25 16 32 H 0.11 -1.49 8.14 -51.92 -0.42 -1.91 16 33 H 0.12 -1.42 8.14 -51.93 -0.42 -1.84 16 34 H 0.13 -0.32 6.12 -51.93 -0.32 -0.64 16 35 H 0.14 -0.73 8.11 -51.93 -0.42 -1.15 16 36 H 0.27 2.02 4.64 -40.82 -0.19 1.83 16 37 H 0.16 -0.22 8.06 -52.49 -0.42 -0.64 16 38 H 0.15 -0.53 8.06 -52.49 -0.42 -0.95 16 39 H 0.12 -0.12 8.14 -51.93 -0.42 -0.54 16 40 H 0.12 -0.39 8.09 -51.93 -0.42 -0.81 16 LS Contribution 337.26 15.07 5.08 5.08 Total: 0.00 -20.09 337.26 -6.84 -26.93 By element: Atomic # 1 Polarization: -19.20 SS G_CDS: -5.57 Total: -24.77 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.26 Total: -2.13 kcal Atomic # 7 Polarization: -7.94 SS G_CDS: 1.39 Total: -6.56 kcal Atomic # 8 Polarization: -0.55 SS G_CDS: -0.10 Total: -0.65 kcal Atomic # 14 Polarization: 9.55 SS G_CDS: -5.08 Total: 4.47 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -2.31 Total: -2.38 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -20.09 -6.84 -26.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223751857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.783 kcal (2) G-P(sol) polarization free energy of solvation -20.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds