Wall clock time and date at job start Wed Apr 1 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 109.46680 * 2 1 4 4 C 1.46897 * 109.47417 * 239.99682 * 2 1 3 5 5 C 1.46900 * 109.46824 * 119.99667 * 2 1 3 6 6 C 1.52994 * 109.47092 * 62.02523 * 5 2 1 7 7 H 1.09001 * 109.47466 * 51.54854 * 6 5 2 8 8 C 1.50703 * 109.47179 * 171.55185 * 6 5 2 9 9 H 1.08004 * 119.99902 * 245.70842 * 8 6 5 10 10 C 1.37875 * 120.00026 * 65.70350 * 8 6 5 11 11 N 1.31510 * 120.00316 * 6.30602 * 10 8 6 12 12 Si 1.86798 * 119.99903 * 186.29729 * 10 8 6 13 13 H 1.48507 * 109.47458 * 270.00560 * 12 10 8 14 14 H 1.48505 * 109.47092 * 30.00098 * 12 10 8 15 15 H 1.48500 * 109.47247 * 150.00592 * 12 10 8 16 16 O 1.42904 * 109.46809 * 291.54758 * 6 5 2 17 17 C 1.35699 * 116.99877 * 150.00345 * 16 6 5 18 18 C 1.39259 * 120.13756 * 179.72488 * 17 16 6 19 19 C 1.38641 * 117.91585 * 179.73524 * 18 17 16 20 20 C 1.38758 * 118.02303 * 0.52877 * 19 18 17 21 21 C 1.50703 * 120.01538 * 179.74933 * 20 19 18 22 22 Br 1.96597 * 109.46922 * 89.97715 * 21 20 19 23 23 N 1.31822 * 119.97198 * 359.72329 * 20 19 18 24 24 N 1.28349 * 122.26000 * 0.02562 * 23 20 19 25 25 H 1.08994 * 109.47306 * 287.38148 * 1 2 3 26 26 H 1.09004 * 109.47046 * 47.38124 * 1 2 3 27 27 H 1.08996 * 109.46859 * 167.37849 * 1 2 3 28 28 H 1.09009 * 109.46717 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47558 * 299.99146 * 3 2 1 30 30 H 1.08996 * 109.47349 * 60.00206 * 3 2 1 31 31 H 1.08994 * 109.47299 * 300.00265 * 4 2 1 32 32 H 1.09008 * 109.46968 * 60.00099 * 4 2 1 33 33 H 1.09002 * 109.46880 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47166 * 302.02219 * 5 2 1 35 35 H 1.09001 * 109.46922 * 182.02624 * 5 2 1 36 36 H 0.97006 * 119.99460 * 354.43497 * 11 10 8 37 37 H 1.07995 * 121.04458 * 359.97438 * 18 17 16 38 38 H 1.08002 * 120.99101 * 180.27846 * 19 18 17 39 39 H 1.09003 * 109.46881 * 209.97306 * 21 20 19 40 40 H 1.08991 * 109.47088 * 329.97384 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9588 -0.6925 -1.1993 5 6 1.9586 -0.6924 1.1995 6 6 1.4907 -2.1488 1.1743 7 1 1.7546 -2.5989 0.2173 8 6 2.1596 -2.9108 2.2893 9 1 2.8584 -3.7016 2.0595 10 6 1.8796 -2.5983 3.6026 11 7 0.9393 -1.7231 3.8843 12 14 2.8357 -3.4184 4.9820 13 1 2.1425 -4.6665 5.3909 14 1 4.2050 -3.7450 4.5091 15 1 2.9196 -2.4959 6.1427 16 8 0.0731 -2.1967 1.3484 17 6 -0.5853 -3.2278 0.7612 18 6 -1.9669 -3.3412 0.8936 19 6 -2.5932 -4.4095 0.2700 20 6 -1.8042 -5.3051 -0.4375 21 6 -2.4375 -6.4855 -1.1279 22 35 -2.9355 -5.9822 -2.9619 23 7 -0.5004 -5.1228 -0.5060 24 7 0.0838 -4.1329 0.0652 25 1 -0.3633 0.3070 0.9807 26 1 -0.3633 0.6959 -0.7563 27 1 -0.3633 -1.0028 -0.2245 28 1 3.0487 1.3850 0.0005 29 1 1.5954 1.8988 -0.8900 30 1 1.5953 1.8988 0.8900 31 1 1.5955 -1.7201 -1.1994 32 1 1.5954 -0.1787 -2.0894 33 1 3.0488 -0.6921 -1.1995 34 1 1.5660 -0.1999 2.0891 35 1 3.0480 -0.6611 1.2179 36 1 0.4985 -1.2379 3.1693 37 1 -2.5333 -2.6176 1.4609 38 1 -3.6629 -4.5428 0.3364 39 1 -1.7279 -7.3124 -1.1581 40 1 -3.3288 -6.7914 -0.5803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223751857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:41 Heat of formation + Delta-G solvation = 122.433915 kcal Electronic energy + Delta-G solvation = -23546.499187 eV Core-core repulsion = 20141.235128 eV Total energy + Delta-G solvation = -3405.264059 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 344.071 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.09866 -42.07518 -39.42733 -35.69531 -34.92911 -33.68408 -31.74260 -31.12830 -29.74530 -29.64822 -27.91819 -27.73244 -25.96349 -24.70176 -23.77275 -22.69767 -20.14631 -19.55371 -18.67005 -17.99518 -17.89692 -17.51804 -16.99093 -16.75987 -15.88158 -15.52700 -15.34512 -15.10564 -14.62527 -14.49193 -14.39804 -14.09821 -13.91604 -13.82779 -13.47878 -13.42917 -13.36607 -13.26562 -13.13360 -12.84793 -12.73587 -12.48169 -12.08568 -12.02253 -11.31013 -11.11417 -10.94330 -10.90423 -10.79749 -10.54697 -9.84325 -8.70867 -6.64370 -0.28917 -0.21814 0.77918 0.83870 1.46770 1.56701 1.68449 1.89585 2.37510 2.55680 2.66548 2.83732 2.87162 2.91964 3.08750 3.27230 3.50365 3.71911 3.77529 3.90912 3.97323 4.06399 4.12264 4.13879 4.16464 4.25253 4.32237 4.38171 4.41834 4.49260 4.59004 4.60616 4.66475 4.71129 4.80261 4.92946 5.10355 5.55086 5.94440 6.21198 6.53204 7.13754 7.64417 8.67891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.259 5.259 3 C -0.045 4.045 4 C -0.051 4.051 5 C 0.016 3.984 6 C 0.173 3.827 7 H 0.081 0.919 8 C -0.628 4.628 9 H 0.044 0.956 10 C 0.025 3.975 11 N -0.898 5.898 12 Si 1.077 2.923 13 H -0.300 1.300 14 H -0.273 1.273 15 H -0.284 1.284 16 O -0.303 6.303 17 C 0.272 3.728 18 C -0.145 4.145 19 C -0.064 4.064 20 C 0.014 3.986 21 C -0.015 4.015 22 Br -0.151 7.151 23 N -0.223 5.223 24 N -0.316 5.316 25 H 0.111 0.889 26 H 0.148 0.852 27 H 0.090 0.910 28 H 0.127 0.873 29 H 0.145 0.855 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.133 0.867 34 H 0.116 0.884 35 H 0.147 0.853 36 H 0.286 0.714 37 H 0.175 0.825 38 H 0.191 0.809 39 H 0.121 0.879 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 12.683 -12.821 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 N 0.083 4.917 3 C -0.185 4.185 4 C -0.192 4.192 5 C -0.106 4.106 6 C 0.119 3.881 7 H 0.099 0.901 8 C -0.666 4.666 9 H 0.063 0.937 10 C -0.183 4.183 11 N -0.534 5.534 12 Si 0.905 3.095 13 H -0.227 1.227 14 H -0.198 1.198 15 H -0.210 1.210 16 O -0.208 6.208 17 C 0.087 3.913 18 C -0.174 4.174 19 C -0.092 4.092 20 C -0.135 4.135 21 C -0.131 4.131 22 Br -0.071 7.071 23 N -0.067 5.067 24 N -0.172 5.172 25 H 0.130 0.870 26 H 0.166 0.834 27 H 0.109 0.891 28 H 0.146 0.854 29 H 0.163 0.837 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.166 0.834 33 H 0.151 0.849 34 H 0.134 0.866 35 H 0.165 0.835 36 H 0.100 0.900 37 H 0.193 0.807 38 H 0.208 0.792 39 H 0.139 0.861 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.250 12.532 -12.177 17.519 hybrid contribution -1.037 -0.281 -0.088 1.078 sum -2.287 12.251 -12.265 17.486 Atomic orbital electron populations 1.24263 0.76766 1.08057 1.09284 1.46029 1.15203 1.16068 1.14377 1.24311 1.06079 0.78160 1.09916 1.24265 1.06315 1.01194 0.87434 1.24246 1.04741 0.93739 0.87840 1.20561 0.75789 0.92322 0.99452 0.90149 1.22222 1.29742 1.21975 0.92656 0.93729 1.26135 0.95274 0.96176 1.00737 1.70939 1.20171 1.24190 1.38139 0.83346 0.75895 0.75444 0.74855 1.22737 1.19817 1.20962 1.86407 1.25325 1.40584 1.68492 1.21642 0.91022 0.88907 0.89742 1.21941 0.92086 1.01405 1.01975 1.22491 1.03581 0.91044 0.92084 1.22485 0.92088 0.99004 0.99908 1.23442 1.05381 0.96083 0.88196 1.97469 1.93148 1.94139 1.22351 1.72638 1.10141 1.11431 1.12463 1.73013 1.31397 1.01137 1.11671 0.87041 0.83368 0.89107 0.85419 0.83684 0.86552 0.89375 0.83365 0.84887 0.86554 0.83474 0.90021 0.80714 0.79163 0.86077 0.83182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.85 7.01 127.69 0.90 1.74 16 2 N -0.26 5.58 0.05 ******* -0.07 5.51 16 3 C -0.04 1.29 7.99 127.69 1.02 2.31 16 4 C -0.05 1.16 7.60 127.69 0.97 2.13 16 5 C 0.02 -0.13 3.47 86.30 0.30 0.17 16 6 C 0.17 0.76 1.62 29.85 0.05 0.81 16 7 H 0.08 0.27 4.67 -2.39 -0.01 0.26 16 8 C -0.63 -11.46 8.86 25.60 0.23 -11.23 16 9 H 0.04 1.05 7.82 -2.91 -0.02 1.03 16 10 C 0.03 0.56 5.24 84.65 0.44 1.00 16 11 N -0.90 -20.08 13.06 21.45 0.28 -19.80 16 12 Si 1.08 22.24 29.91 68.60 2.05 24.30 16 13 H -0.30 -7.07 7.11 99.48 0.71 -6.36 16 14 H -0.27 -5.18 7.11 99.48 0.71 -4.47 16 15 H -0.28 -6.14 7.11 99.48 0.71 -5.43 16 16 O -0.30 -1.55 5.08 -90.19 -0.46 -2.01 16 17 C 0.27 1.80 6.61 84.86 0.56 2.36 16 18 C -0.14 -0.16 10.16 22.61 0.23 0.07 16 19 C -0.06 0.10 9.87 22.49 0.22 0.32 16 20 C 0.01 0.04 6.18 42.69 0.26 0.30 16 21 C -0.01 0.03 6.91 71.24 0.49 0.53 16 22 Br -0.15 -0.11 33.92 -20.37 -0.69 -0.80 16 23 N -0.22 -2.13 11.42 -47.59 -0.54 -2.67 16 24 N -0.32 -3.36 9.84 -170.22 -1.67 -5.04 16 25 H 0.11 -1.93 7.87 -2.39 -0.02 -1.95 16 26 H 0.15 -4.16 7.94 -2.39 -0.02 -4.18 16 27 H 0.09 -1.24 5.18 -2.39 -0.01 -1.25 16 28 H 0.13 -3.83 8.14 -2.38 -0.02 -3.85 16 29 H 0.14 -4.94 8.05 -2.39 -0.02 -4.96 16 30 H 0.12 -3.19 8.14 -2.39 -0.02 -3.21 16 31 H 0.09 -1.29 5.84 -2.39 -0.01 -1.31 16 32 H 0.15 -4.33 8.14 -2.38 -0.02 -4.35 16 33 H 0.13 -3.32 8.14 -2.39 -0.02 -3.34 16 34 H 0.12 -0.48 6.12 -2.39 -0.01 -0.49 16 35 H 0.15 -1.57 8.11 -2.39 -0.02 -1.58 16 36 H 0.29 4.70 4.64 -92.70 -0.43 4.27 16 37 H 0.18 -0.63 8.06 -2.91 -0.02 -0.65 16 38 H 0.19 -1.79 8.06 -2.91 -0.02 -1.81 16 39 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.15 -1.26 8.09 -2.39 -0.02 -1.28 16 Total: 0.00 -51.12 337.26 5.95 -45.18 By element: Atomic # 1 Polarization: -46.53 SS G_CDS: 1.38 Total: -45.15 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 5.67 Total: 0.50 kcal Atomic # 7 Polarization: -20.00 SS G_CDS: -2.01 Total: -22.00 kcal Atomic # 8 Polarization: -1.55 SS G_CDS: -0.46 Total: -2.01 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: 2.05 Total: 24.30 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -0.69 Total: -0.80 kcal Total: -51.12 5.95 -45.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223751857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.610 kcal (2) G-P(sol) polarization free energy of solvation -51.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds