Wall clock time and date at job start Wed Apr 1 2020 03:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00083 * 2 1 4 4 H 1.48499 * 109.47275 * 270.00349 * 3 2 1 5 5 H 1.48500 * 109.46921 * 30.00096 * 3 2 1 6 6 H 1.48499 * 109.47068 * 150.00024 * 3 2 1 7 7 C 1.38810 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00085 * 0.02562 * 7 2 1 9 9 N 1.36945 * 119.99674 * 179.97438 * 7 2 1 10 10 C 1.46508 * 119.99531 * 184.85417 * 9 7 2 11 11 C 1.52993 * 112.90597 * 292.50713 * 10 9 7 12 12 N 1.46503 * 109.47482 * 311.32300 * 11 10 9 13 13 C 1.34782 * 120.00019 * 174.90275 * 12 11 10 14 14 O 1.21578 * 119.99728 * 0.02562 * 13 12 11 15 15 C 1.47630 * 119.99953 * 180.02562 * 13 12 11 16 16 C 1.39708 * 120.14045 * 0.02562 * 15 13 12 17 17 C 1.37995 * 119.86287 * 179.97438 * 16 15 13 18 18 F 1.35099 * 119.92262 * 180.02562 * 17 16 15 19 19 C 1.38807 * 120.15318 * 0.02562 * 17 16 15 20 20 Cl 1.73599 * 119.85241 * 179.97438 * 19 17 16 21 21 C 1.38315 * 120.29245 * 359.97438 * 19 17 16 22 22 C 1.38265 * 120.13307 * 359.72444 * 21 19 17 23 23 F 1.35099 * 120.08251 * 180.29969 * 22 21 19 24 24 C 1.53771 * 113.61447 * 63.76184 * 10 9 7 25 25 C 1.53783 * 87.08335 * 89.11494 * 24 10 9 26 26 C 1.53781 * 113.61092 * 161.26246 * 10 9 7 27 27 H 0.97003 * 119.99740 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00562 * 4.85335 * 9 7 2 29 29 H 1.09001 * 109.47349 * 71.32914 * 11 10 9 30 30 H 1.09000 * 109.47012 * 191.32282 * 11 10 9 31 31 H 0.96997 * 119.99767 * 354.90847 * 12 11 10 32 32 H 1.08001 * 120.07186 * 0.02946 * 16 15 13 33 33 H 1.08005 * 119.93433 * 179.97438 * 21 19 17 34 34 H 1.08999 * 113.62174 * 334.56784 * 24 10 9 35 35 H 1.08999 * 113.61399 * 203.66162 * 24 10 9 36 36 H 1.08993 * 113.61930 * 139.97946 * 25 24 10 37 37 H 1.09001 * 113.61216 * 270.88401 * 25 24 10 38 38 H 1.08996 * 113.61888 * 156.33471 * 26 10 9 39 39 H 1.09001 * 113.69314 * 25.43515 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4664 -0.1090 11 6 3.9431 -3.3594 1.1217 12 7 4.1817 -2.5714 2.3335 13 6 3.9875 -3.1254 3.5467 14 8 3.6149 -4.2793 3.6354 15 6 4.2274 -2.3312 4.7678 16 6 4.6552 -1.0049 4.6692 17 6 4.8771 -0.2675 5.8143 18 9 5.2903 1.0153 5.7204 19 6 4.6769 -0.8409 7.0625 20 17 4.9592 0.0937 8.4980 21 6 4.2535 -2.1534 7.1676 22 6 4.0215 -2.9012 6.0280 23 9 3.6021 -4.1813 6.1317 24 6 3.8801 -3.2010 -1.4398 25 6 5.0701 -2.4024 -1.9977 26 6 5.5755 -2.2947 -0.5492 27 1 -0.4850 0.8401 0.0004 28 1 3.8647 -0.3651 0.0700 29 1 2.9299 -3.7609 1.1429 30 1 4.6583 -4.1806 1.0756 31 1 4.4793 -1.6509 2.2626 32 1 4.8110 -0.5572 3.6988 33 1 4.0999 -2.5938 8.1417 34 1 2.9295 -2.9563 -1.9138 35 1 4.0624 -4.2742 -1.3837 36 1 5.7230 -2.9871 -2.6456 37 1 4.7870 -1.4444 -2.4337 38 1 6.2213 -3.1201 -0.2497 39 1 5.9949 -1.3188 -0.3047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273141851.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:45 Heat of formation + Delta-G solvation = -62.712259 kcal Electronic energy + Delta-G solvation = -27822.762921 eV Core-core repulsion = 23428.747568 eV Total energy + Delta-G solvation = -4394.015352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.28592 -49.09898 -40.15800 -39.11032 -38.23048 -36.91013 -34.24878 -33.34670 -31.84116 -30.62545 -30.41897 -27.64071 -25.40679 -24.67716 -23.75907 -23.09616 -21.72576 -20.54782 -18.90293 -18.22965 -17.85549 -17.71473 -17.65766 -16.61485 -16.35770 -15.67255 -15.63142 -15.18207 -14.99470 -14.74086 -14.66757 -14.38239 -14.31435 -14.05822 -13.51288 -13.21325 -13.11293 -12.96150 -12.78895 -12.54098 -12.10418 -11.92362 -11.57734 -11.54067 -11.49521 -11.28727 -10.98358 -10.52183 -10.35749 -10.24285 -9.84934 -9.75004 -9.60027 -9.58359 -9.02392 -8.97857 -8.66748 -7.44884 -5.87554 -3.26628 0.05940 0.48441 1.42290 2.41646 3.17855 3.21931 3.28911 3.36533 3.40691 3.55918 3.75820 4.04447 4.39782 4.46175 4.60798 4.88963 4.92307 4.99400 5.09989 5.12848 5.24005 5.24763 5.34950 5.44213 5.54954 5.59057 5.86731 5.97052 6.04080 6.13113 6.14004 6.17411 6.36321 6.55280 6.70411 6.77643 6.89131 7.69865 7.88439 8.29843 8.34710 9.06739 9.78040 9.95392 11.30115 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.003799 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.178368 B = 7369.000066 C = 8569.317360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.881 3.119 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.726 5.726 10 C 0.176 3.824 11 C 0.122 3.878 12 N -0.691 5.691 13 C 0.553 3.447 14 O -0.527 6.527 15 C -0.128 4.128 16 C -0.079 4.079 17 C 0.096 3.904 18 F -0.118 7.118 19 C -0.029 4.029 20 Cl -0.032 7.032 21 C -0.130 4.130 22 C 0.164 3.836 23 F -0.101 7.101 24 C -0.145 4.145 25 C -0.130 4.130 26 C -0.147 4.147 27 H 0.260 0.740 28 H 0.363 0.637 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.399 0.601 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.181 -2.429 11.403 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.185 4.185 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.372 4.372 8 H 0.110 0.890 9 N -0.369 5.369 10 C 0.083 3.917 11 C -0.004 4.004 12 N -0.341 5.341 13 C 0.338 3.662 14 O -0.405 6.405 15 C -0.133 4.133 16 C -0.099 4.099 17 C 0.075 3.925 18 F -0.096 7.096 19 C -0.057 4.057 20 Cl -0.003 7.003 21 C -0.150 4.150 22 C 0.142 3.858 23 F -0.079 7.079 24 C -0.185 4.185 25 C -0.168 4.168 26 C -0.185 4.185 27 H 0.071 0.929 28 H 0.197 0.803 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.235 0.765 32 H 0.178 0.822 33 H 0.180 0.820 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.661 -3.211 11.532 18.164 hybrid contribution 0.548 1.971 0.143 2.051 sum 14.209 -1.240 11.676 18.432 Atomic orbital electron populations 1.69691 1.05102 1.25882 1.56712 1.24663 0.95129 0.96996 1.01741 0.86640 0.78947 0.85402 0.77863 1.21030 1.21737 1.20590 1.18922 0.80029 0.94714 1.43563 0.89013 1.42460 1.04055 1.01373 1.88975 1.20789 0.91147 0.88158 0.91557 1.21896 1.01653 0.93383 0.83469 1.45611 1.66788 1.16635 1.05031 1.17671 0.79018 0.86573 0.82986 1.90841 1.46129 1.16803 1.86737 1.20169 1.04427 0.94662 0.94023 1.21243 0.97363 0.92505 0.98754 1.17123 1.02615 0.80660 0.92085 1.91591 1.87465 1.33784 1.96778 1.20813 1.03882 0.93267 0.87763 1.98416 1.94288 1.71967 1.35635 1.20839 1.02447 0.92112 0.99578 1.17369 0.96246 0.80262 0.91897 1.91650 1.86193 1.33494 1.96564 1.23240 0.99634 0.97925 0.97734 1.22654 0.97798 1.00866 0.95479 1.23255 0.96213 1.01544 0.97478 0.92927 0.80269 0.90802 0.92064 0.76482 0.82194 0.81959 0.90029 0.90945 0.92410 0.90174 0.89990 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.97 55.49 0.78 -27.03 16 2 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 3 Si 0.88 20.52 27.78 -169.99 -4.72 15.80 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -5.86 6.45 56.52 0.36 -5.49 16 7 C -0.24 -6.17 9.71 -15.06 -0.15 -6.32 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 9 N -0.73 -14.71 4.38 -46.48 -0.20 -14.91 16 10 C 0.18 2.90 0.90 -131.01 -0.12 2.78 16 11 C 0.12 2.02 5.06 -4.04 -0.02 2.00 16 12 N -0.69 -10.93 5.33 -61.32 -0.33 -11.26 16 13 C 0.55 9.21 7.77 -12.42 -0.10 9.11 16 14 O -0.53 -10.45 15.33 5.30 0.08 -10.37 16 15 C -0.13 -1.76 5.88 -104.92 -0.62 -2.38 16 16 C -0.08 -0.94 9.51 -39.12 -0.37 -1.31 16 17 C 0.10 1.10 7.26 -39.46 -0.29 0.81 16 18 F -0.12 -1.42 16.82 2.25 0.04 -1.38 16 19 C -0.03 -0.30 6.33 -39.34 -0.25 -0.55 16 20 Cl -0.03 -0.31 28.60 -51.86 -1.48 -1.79 16 21 C -0.13 -1.31 9.79 -39.54 -0.39 -1.70 16 22 C 0.16 2.10 7.28 -38.97 -0.28 1.81 16 23 F -0.10 -1.49 15.54 2.25 0.04 -1.45 16 24 C -0.15 -2.30 7.27 -25.92 -0.19 -2.48 16 25 C -0.13 -1.81 7.99 -25.91 -0.21 -2.02 16 26 C -0.15 -1.95 7.37 -25.92 -0.19 -2.14 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.36 7.22 5.72 -40.82 -0.23 6.99 16 29 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 31 H 0.40 5.77 6.15 -40.82 -0.25 5.52 16 32 H 0.16 1.71 6.40 -52.49 -0.34 1.38 16 33 H 0.16 1.21 8.06 -52.48 -0.42 0.78 16 34 H 0.08 1.51 7.78 -51.93 -0.40 1.11 16 35 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 0.94 7.96 -51.93 -0.41 0.53 16 39 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -30.56 353.06 -7.92 -38.48 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -4.18 Total: 10.77 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.26 Total: -2.18 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.24 Total: -53.20 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.07 Total: -2.83 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.72 Total: 15.80 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.48 Total: -1.79 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.56 -7.92 -38.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273141851.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.229 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds