Wall clock time and date at job start Wed Apr 1 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47291 * 2 1 4 4 C 1.53007 * 109.47084 * 240.00064 * 2 1 3 5 5 N 1.46496 * 109.46951 * 185.00061 * 4 2 1 6 6 C 1.46495 * 120.00280 * 270.00003 * 5 4 2 7 7 C 1.34778 * 119.99919 * 90.00597 * 5 4 2 8 8 O 1.21601 * 119.99732 * 356.79655 * 7 5 4 9 9 C 1.47443 * 120.00242 * 176.79849 * 7 5 4 10 10 C 1.37979 * 124.15924 * 185.99759 * 9 7 5 11 11 S 1.72101 * 104.03564 * 179.97438 * 10 9 7 12 12 N 1.56399 * 96.15451 * 0.02562 * 11 10 9 13 13 N 1.27420 * 109.87696 * 359.74579 * 12 11 10 14 14 N 1.46502 * 109.46766 * 120.00617 * 2 1 3 15 15 C 1.34774 * 119.99570 * 274.99423 * 14 2 1 16 16 O 1.21282 * 120.00193 * 0.02562 * 15 14 2 17 17 C 1.50703 * 119.99697 * 180.27737 * 15 14 2 18 18 S 1.81007 * 109.47053 * 179.72397 * 17 15 14 19 19 C 1.76201 * 99.99793 * 180.02562 * 18 17 15 20 20 H 1.07992 * 120.00265 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99542 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00377 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99791 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47043 * 89.99925 * 23 21 19 25 25 H 1.48496 * 109.46779 * 209.99636 * 23 21 19 26 26 H 1.48496 * 109.46689 * 329.99524 * 23 21 19 27 27 H 1.09000 * 109.47113 * 59.99753 * 1 2 3 28 28 H 1.09000 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46972 * 300.00201 * 1 2 3 30 30 H 1.08995 * 109.47046 * 305.00324 * 4 2 1 31 31 H 1.09003 * 109.46937 * 64.99835 * 4 2 1 32 32 H 1.08999 * 109.47482 * 95.77261 * 6 5 4 33 33 H 1.09002 * 109.47259 * 215.77579 * 6 5 4 34 34 H 1.09001 * 109.47193 * 335.77346 * 6 5 4 35 35 H 1.08007 * 127.97949 * 359.95798 * 10 9 7 36 36 H 0.97002 * 120.00102 * 95.00380 * 14 2 1 37 37 H 1.08995 * 109.47253 * 299.72549 * 17 15 14 38 38 H 1.09003 * 109.47061 * 59.72987 * 17 15 14 39 39 H 0.97001 * 120.00265 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.3343 0.2340 -1.7612 7 6 4.0757 -1.8988 -0.6117 8 8 3.3845 -2.7504 -0.0867 9 6 5.5434 -2.0392 -0.6149 10 6 6.2161 -3.1529 -0.1555 11 16 7.8758 -2.7679 -0.3989 12 7 7.6309 -1.3495 -1.0106 13 7 6.3804 -1.1111 -1.0650 14 7 2.0182 -0.6908 1.1961 15 6 2.1470 -0.0184 2.3571 16 8 1.8582 1.1582 2.4117 17 6 2.6552 -0.7274 3.5860 18 16 2.7224 0.4372 4.9700 19 6 3.3323 -0.6264 6.2355 20 1 3.5415 -1.6628 6.0155 21 6 3.5440 -0.1321 7.5150 22 7 3.2895 1.1312 7.7831 23 14 4.1913 -1.2595 8.8566 24 1 5.6757 -1.2188 8.8637 25 1 3.6774 -0.8068 10.1742 26 1 3.7353 -2.6489 8.5981 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6053 -1.7197 -1.2952 31 1 1.7516 -0.1583 -2.1370 32 1 4.6250 0.9305 -0.9748 33 1 5.2273 -0.2057 -2.2055 34 1 3.7714 0.7662 -2.5281 35 1 5.7977 -4.0573 0.2610 36 1 2.2490 -1.6319 1.1525 37 1 1.9839 -1.5493 3.8350 38 1 3.6536 -1.1196 3.3924 39 1 3.4378 1.4767 8.6773 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281029563.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:42 Heat of formation + Delta-G solvation = 15.844766 kcal Electronic energy + Delta-G solvation = -25466.671853 eV Core-core repulsion = 21664.239833 eV Total energy + Delta-G solvation = -3802.432020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57949 -40.05416 -38.84629 -36.49489 -34.71366 -32.48764 -32.39669 -31.40175 -28.59283 -28.14628 -27.14121 -26.49574 -25.44975 -23.40962 -21.69741 -20.83975 -20.10109 -18.97739 -17.82566 -17.02362 -16.74123 -16.62992 -16.17176 -15.98339 -15.74161 -14.90758 -14.77874 -14.74915 -14.18402 -14.07390 -13.53052 -13.40461 -13.16835 -13.09352 -12.76261 -12.53684 -12.47413 -12.35502 -12.11830 -11.92292 -11.74463 -11.18029 -11.03918 -10.99009 -10.73364 -10.54729 -10.45065 -10.44026 -10.25001 -9.77828 -9.30196 -9.05348 -9.02637 -8.71086 -8.18810 -6.45517 -6.18493 -3.88324 -0.29637 0.55884 1.06414 1.17243 2.54187 2.74772 3.12119 3.20874 3.23936 3.29912 3.36282 3.43880 3.82763 4.23709 4.25044 4.37047 4.64154 4.81868 4.90739 4.96929 5.14980 5.16583 5.22437 5.32984 5.44626 5.48727 5.61494 5.75203 5.77669 5.96610 6.00724 6.07383 6.22621 6.26152 6.78813 6.88604 7.11884 7.62761 7.64258 7.94083 8.38690 8.75489 9.26723 10.88990 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.009339 B = 0.003560 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.449877 B = 7862.314885 C =10073.759626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.089 0.911 4 C 0.107 3.893 5 N -0.592 5.592 6 C 0.067 3.933 7 C 0.608 3.392 8 O -0.527 6.527 9 C -0.022 4.022 10 C -0.235 4.235 11 S 0.472 5.528 12 N -0.294 5.294 13 N -0.207 5.207 14 N -0.732 5.732 15 C 0.532 3.468 16 O -0.522 6.522 17 C -0.151 4.151 18 S -0.060 6.060 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.210 0.790 36 H 0.406 0.594 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.060 -9.773 -24.165 26.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.020 3.980 3 H 0.107 0.893 4 C -0.016 4.016 5 N -0.322 5.322 6 C -0.076 4.076 7 C 0.391 3.609 8 O -0.403 6.403 9 C -0.169 4.169 10 C -0.392 4.392 11 S 0.608 5.392 12 N -0.275 5.275 13 N -0.077 5.077 14 N -0.391 5.391 15 C 0.318 3.682 16 O -0.397 6.397 17 C -0.301 4.301 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.227 0.773 36 H 0.245 0.755 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.883 -7.276 -24.133 25.883 hybrid contribution -0.628 -2.827 1.145 3.115 sum 5.256 -10.104 -22.988 25.654 Atomic orbital electron populations 1.22131 0.94635 1.02339 1.02940 1.21297 0.94429 0.97939 0.84354 0.89271 1.22039 0.78447 1.02961 0.98164 1.47605 1.07187 1.20663 1.56768 1.22392 0.95901 0.90280 0.99008 1.16687 0.83885 0.81760 0.78524 1.90746 1.62273 1.42055 1.45209 1.22558 0.97370 0.91801 1.05172 1.28923 1.00447 1.05020 1.04772 1.81591 1.05512 1.10637 1.41505 1.78673 1.12863 1.14356 1.21572 1.71823 0.94851 1.25628 1.15422 1.46354 1.68865 1.14904 1.08996 1.20279 0.76866 0.87165 0.83906 1.90674 1.48767 1.15735 1.84535 1.23506 1.03387 1.04779 0.98468 1.85336 1.86051 1.12961 0.98983 1.22875 1.50634 0.98193 0.96564 0.91016 1.24980 0.95150 0.95520 0.97883 1.70021 1.45600 1.13189 1.21545 0.86184 0.78988 0.80259 0.80179 1.20308 1.20727 1.19678 0.91773 0.92299 0.91212 0.88946 0.88414 0.91750 0.88028 0.90988 0.77307 0.75520 0.89350 0.89780 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.48 37.16 0.35 -1.43 16 2 C 0.13 1.56 2.88 -67.93 -0.20 1.36 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.85 16 4 C 0.11 0.97 5.18 -4.04 -0.02 0.95 16 5 N -0.59 -6.15 2.77 -182.85 -0.51 -6.66 16 6 C 0.07 0.60 9.59 59.84 0.57 1.18 16 7 C 0.61 7.30 7.03 -12.51 -0.09 7.22 16 8 O -0.53 -7.13 13.95 5.28 0.07 -7.05 16 9 C -0.02 -0.24 6.64 -83.78 -0.56 -0.80 16 10 C -0.23 -1.95 11.21 30.64 0.34 -1.61 16 11 S 0.47 3.23 23.38 -107.50 -2.51 0.71 16 12 N -0.29 -3.05 12.49 60.35 0.75 -2.30 16 13 N -0.21 -2.32 7.91 32.74 0.26 -2.06 16 14 N -0.73 -11.44 4.48 -53.80 -0.24 -11.68 16 15 C 0.53 10.82 7.81 -10.99 -0.09 10.73 16 16 O -0.52 -12.32 15.53 5.56 0.09 -12.24 16 17 C -0.15 -3.33 6.16 36.01 0.22 -3.11 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.68 9.50 30.94 0.29 -15.39 16 20 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 21 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 22 N -0.87 -26.65 13.22 55.49 0.73 -25.91 16 23 Si 0.92 21.79 29.55 -169.99 -5.02 16.76 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.09 0.83 7.47 -51.93 -0.39 0.45 16 31 H 0.10 0.58 7.86 -51.93 -0.41 0.18 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.93 5.24 -51.93 -0.27 0.66 16 34 H 0.07 0.46 7.83 -51.93 -0.41 0.05 16 35 H 0.21 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.41 6.13 5.68 -40.82 -0.23 5.90 16 37 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 38 H 0.08 1.78 8.14 -51.91 -0.42 1.35 16 39 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -37.07 360.82 -7.01 -44.08 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -4.60 Total: 3.66 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 0.74 Total: 1.16 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 1.00 Total: -48.62 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.16 Total: -19.29 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -4.72 Total: -3.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.07 -7.01 -44.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281029563.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.924 kcal (2) G-P(sol) polarization free energy of solvation -37.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds