Wall clock time and date at job start Wed Apr 1 2020 02:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46931 * 2 1 4 4 N 1.46497 * 109.47393 * 239.99454 * 2 1 3 5 5 C 1.36931 * 120.00278 * 85.00276 * 4 2 1 6 6 H 1.08002 * 119.99904 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00466 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99507 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00287 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46881 * 269.99428 * 9 7 5 11 11 H 1.48503 * 109.47188 * 29.99133 * 9 7 5 12 12 H 1.48499 * 109.47466 * 149.99653 * 9 7 5 13 13 C 1.53003 * 109.46806 * 119.99523 * 2 1 3 14 14 H 1.08998 * 109.51169 * 299.90112 * 13 2 1 15 15 C 1.53293 * 109.51347 * 179.74638 * 13 2 1 16 16 N 1.47150 * 108.38771 * 187.77109 * 15 13 2 17 17 C 1.34772 * 120.98425 * 230.51542 * 16 15 13 18 18 O 1.21632 * 120.00147 * 355.81880 * 17 16 15 19 19 C 1.47161 * 120.00019 * 175.82058 * 17 16 15 20 20 C 1.36047 * 123.46521 * 50.76364 * 19 17 16 21 21 S 1.70442 * 110.83071 * 180.02562 * 20 19 17 22 22 C 1.75500 * 92.45896 * 359.97438 * 21 20 19 23 23 C 1.32850 * 110.57781 * 359.71715 * 22 21 20 24 24 Cl 1.73603 * 123.46869 * 180.28069 * 23 22 21 25 25 C 1.47154 * 118.03106 * 50.53556 * 16 15 13 26 26 C 1.53292 * 108.38739 * 309.46460 * 25 16 15 27 27 O 1.42961 * 109.22142 * 52.30349 * 26 25 16 28 28 H 1.09002 * 109.47363 * 300.00446 * 1 2 3 29 29 H 1.09003 * 109.47012 * 60.00706 * 1 2 3 30 30 H 1.09003 * 109.47411 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00049 * 265.00141 * 4 2 1 32 32 H 0.97011 * 119.99677 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.68261 * 307.49946 * 15 13 2 34 34 H 1.09003 * 109.68253 * 68.05052 * 15 13 2 35 35 H 1.07995 * 124.58686 * 0.02562 * 20 19 17 36 36 H 1.07998 * 124.71098 * 179.97438 * 22 21 20 37 37 H 1.09004 * 109.68193 * 189.73981 * 25 16 15 38 38 H 1.09004 * 109.68186 * 69.18899 * 25 16 15 39 39 H 1.09000 * 109.51094 * 292.38155 * 26 25 16 40 40 H 1.09000 * 109.55677 * 172.24989 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0077 -2.3757 6 1 1.8920 1.0401 -2.4244 7 6 2.6115 -0.6623 -3.5091 8 7 2.9245 -1.9394 -3.4498 9 14 2.7907 0.2696 -5.1181 10 1 1.5230 0.1793 -5.8862 11 1 3.0965 1.6946 -4.8334 12 1 3.8949 -0.3243 -5.9138 13 6 2.0399 -0.7212 1.2493 14 1 1.6784 -0.2068 2.1397 15 6 3.5728 -0.7273 1.2472 16 7 4.0351 -1.5827 2.3517 17 6 4.9542 -1.1415 3.2331 18 8 5.4702 -0.0509 3.0790 19 6 5.3334 -1.9792 4.3821 20 6 5.7057 -3.2829 4.2696 21 16 6.0748 -3.9418 5.7975 22 6 5.7231 -2.4309 6.6181 23 6 5.3550 -1.4999 5.7448 24 17 4.9371 0.1237 6.1953 25 6 3.4646 -2.9344 2.4650 26 6 1.9369 -2.8208 2.4078 27 8 1.5638 -2.0692 1.2504 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 2.2491 -1.6319 -1.1524 32 1 3.2479 -2.3967 -4.2418 33 1 3.9370 -1.1230 0.2991 34 1 3.9442 0.2876 1.3888 35 1 5.7600 -3.8267 3.3382 36 1 5.7995 -2.2779 7.6845 37 1 3.7642 -3.3812 3.4130 38 1 3.8179 -3.5524 1.6395 39 1 1.5758 -2.3142 3.3028 40 1 1.4988 -3.8173 2.3516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282915431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:36 Heat of formation + Delta-G solvation = -25.662949 kcal Electronic energy + Delta-G solvation = -26051.334347 eV Core-core repulsion = 22212.765960 eV Total energy + Delta-G solvation = -3838.568387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.49682 -38.68786 -37.45233 -36.22777 -35.46037 -34.48681 -32.30376 -30.72104 -29.88434 -28.38511 -27.74320 -25.24652 -24.15518 -23.47097 -22.55616 -20.75407 -19.68673 -19.33763 -18.06007 -17.42245 -17.15426 -16.32070 -15.94684 -15.41252 -15.21275 -14.78669 -14.60044 -14.27652 -13.94944 -13.82629 -13.66268 -13.33282 -13.31844 -13.11455 -12.72825 -12.39478 -12.02115 -11.89928 -11.78208 -11.59705 -11.35026 -11.17092 -11.09819 -10.81929 -10.77814 -10.47416 -10.30086 -10.07230 -9.87080 -9.77519 -9.55734 -9.31344 -8.90633 -8.77162 -8.36761 -6.90878 -5.72375 -3.00556 0.35092 0.84357 1.26663 1.57439 2.23354 2.69523 3.03693 3.46478 3.52074 3.53215 3.98666 4.22298 4.44005 4.62513 4.82430 4.87660 4.99282 5.04163 5.11812 5.30229 5.39958 5.40952 5.46537 5.52365 5.62932 5.70526 5.78692 5.86946 6.02251 6.23110 6.35141 6.42635 6.56066 6.68351 6.79892 7.15137 7.35231 7.48137 7.74285 8.11082 8.46027 9.58431 10.15272 10.52686 11.49921 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.002909 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.159055 B = 9621.458315 C = 9813.318188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.282 1.282 12 H -0.292 1.292 13 C 0.078 3.922 14 H 0.055 0.945 15 C 0.088 3.912 16 N -0.602 5.602 17 C 0.576 3.424 18 O -0.519 6.519 19 C -0.134 4.134 20 C -0.213 4.213 21 S 0.226 5.774 22 C -0.233 4.233 23 C -0.013 4.013 24 Cl -0.026 7.026 25 C 0.063 3.937 26 C 0.049 3.951 27 O -0.358 6.358 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.390 0.610 32 H 0.254 0.746 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.182 0.818 36 H 0.179 0.821 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.737 -6.434 23.711 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.208 1.208 12 H -0.219 1.219 13 C 0.019 3.981 14 H 0.073 0.927 15 C -0.034 4.034 16 N -0.336 5.336 17 C 0.361 3.639 18 O -0.396 6.396 19 C -0.153 4.153 20 C -0.350 4.350 21 S 0.491 5.509 22 C -0.369 4.369 23 C -0.052 4.052 24 Cl 0.003 6.997 25 C -0.060 4.060 26 C -0.030 4.030 27 O -0.276 6.276 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.225 0.775 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.199 0.801 36 H 0.197 0.803 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.373 -7.061 23.853 25.257 hybrid contribution -0.194 1.662 -1.201 2.060 sum 4.180 -5.400 22.651 23.658 Atomic orbital electron populations 1.22348 0.98496 1.01558 0.99637 1.20258 0.92769 0.94659 0.85139 0.92200 1.42383 1.77666 1.11007 1.04900 1.19245 1.36444 0.93834 0.87410 0.91215 1.24707 1.02244 0.95926 0.97921 1.69677 1.50883 1.08623 1.28712 0.86229 0.77209 0.78866 0.84116 1.21837 1.20777 1.21890 1.22930 0.92100 0.83422 0.99652 0.92688 1.22489 0.94956 0.96475 0.89462 1.48088 1.40895 1.15758 1.28817 1.17475 0.79588 0.85601 0.81272 1.90837 1.52807 1.21215 1.74700 1.19969 1.07992 0.93978 0.93313 1.25695 1.06057 0.98053 1.05244 1.83144 1.63400 1.10134 0.94205 1.25425 1.10143 0.96918 1.04389 1.20619 1.04145 0.88767 0.91664 1.98403 1.91519 1.17906 1.91912 1.22713 0.95703 0.84179 1.03433 1.22875 0.92853 0.97595 0.89628 1.88109 1.75092 1.23694 1.40670 0.94854 0.92749 0.92550 0.77532 0.93642 0.88227 0.88460 0.80084 0.80324 0.89012 0.89833 0.93274 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.35 37.16 0.35 -2.63 16 2 C 0.18 3.64 2.74 -67.93 -0.19 3.45 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.78 16 4 N -0.72 -17.68 4.28 -53.43 -0.23 -17.90 16 5 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 9 Si 0.90 22.47 29.55 -169.99 -5.02 17.45 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 C 0.08 1.34 2.53 -26.58 -0.07 1.28 16 14 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.09 1.55 5.85 -3.54 -0.02 1.53 16 16 N -0.60 -9.04 3.02 -173.64 -0.52 -9.57 16 17 C 0.58 9.00 7.13 -12.64 -0.09 8.91 16 18 O -0.52 -9.96 16.21 5.25 0.09 -9.88 16 19 C -0.13 -1.63 5.05 -104.61 -0.53 -2.15 16 20 C -0.21 -1.88 8.42 29.95 0.25 -1.63 16 21 S 0.23 1.42 23.02 -107.50 -2.47 -1.06 16 22 C -0.23 -1.82 11.00 28.88 0.32 -1.51 16 23 C -0.01 -0.14 6.49 -38.99 -0.25 -0.40 16 24 Cl -0.03 -0.32 28.47 -51.86 -1.48 -1.79 16 25 C 0.06 0.74 5.80 -3.53 -0.02 0.72 16 26 C 0.05 0.60 6.98 37.31 0.26 0.86 16 27 O -0.36 -6.04 9.22 -35.23 -0.32 -6.37 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.09 7.69 -51.93 -0.40 0.69 16 31 H 0.39 10.34 7.20 -40.82 -0.29 10.05 16 32 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.10 2.05 7.26 -51.93 -0.38 1.68 16 34 H 0.10 1.81 7.11 -51.93 -0.37 1.44 16 35 H 0.18 1.36 7.43 -52.49 -0.39 0.97 16 36 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.09 0.83 4.82 -51.93 -0.25 0.58 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -32.96 357.56 -9.09 -42.05 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.00 Total: 7.54 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.23 Total: 1.31 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.03 Total: -54.64 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.24 Total: -16.25 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.47 Total: -1.06 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.48 Total: -1.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.96 -9.09 -42.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282915431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.390 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds