Wall clock time and date at job start Wed Apr 1 2020 02:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46931 * 2 1 4 4 N 1.46497 * 109.47393 * 239.99454 * 2 1 3 5 5 C 1.36931 * 120.00278 * 85.00276 * 4 2 1 6 6 H 1.08002 * 119.99904 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00466 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99507 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00287 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46881 * 269.99428 * 9 7 5 11 11 H 1.48503 * 109.47188 * 29.99133 * 9 7 5 12 12 H 1.48499 * 109.47466 * 149.99653 * 9 7 5 13 13 C 1.53003 * 109.46806 * 119.99523 * 2 1 3 14 14 H 1.08998 * 109.51169 * 299.90112 * 13 2 1 15 15 C 1.53293 * 109.51347 * 179.74638 * 13 2 1 16 16 N 1.47150 * 108.38771 * 187.77109 * 15 13 2 17 17 C 1.34772 * 120.98425 * 230.51542 * 16 15 13 18 18 O 1.21632 * 120.00147 * 355.81880 * 17 16 15 19 19 C 1.47161 * 120.00019 * 175.82058 * 17 16 15 20 20 C 1.36047 * 123.46521 * 50.76364 * 19 17 16 21 21 S 1.70442 * 110.83071 * 180.02562 * 20 19 17 22 22 C 1.75500 * 92.45896 * 359.97438 * 21 20 19 23 23 C 1.32850 * 110.57781 * 359.71715 * 22 21 20 24 24 Cl 1.73603 * 123.46869 * 180.28069 * 23 22 21 25 25 C 1.47154 * 118.03106 * 50.53556 * 16 15 13 26 26 C 1.53292 * 108.38739 * 309.46460 * 25 16 15 27 27 O 1.42961 * 109.22142 * 52.30349 * 26 25 16 28 28 H 1.09002 * 109.47363 * 300.00446 * 1 2 3 29 29 H 1.09003 * 109.47012 * 60.00706 * 1 2 3 30 30 H 1.09003 * 109.47411 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00049 * 265.00141 * 4 2 1 32 32 H 0.97011 * 119.99677 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.68261 * 307.49946 * 15 13 2 34 34 H 1.09003 * 109.68253 * 68.05052 * 15 13 2 35 35 H 1.07995 * 124.58686 * 0.02562 * 20 19 17 36 36 H 1.07998 * 124.71098 * 179.97438 * 22 21 20 37 37 H 1.09004 * 109.68193 * 189.73981 * 25 16 15 38 38 H 1.09004 * 109.68186 * 69.18899 * 25 16 15 39 39 H 1.09000 * 109.51094 * 292.38155 * 26 25 16 40 40 H 1.09000 * 109.55677 * 172.24989 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0077 -2.3757 6 1 1.8920 1.0401 -2.4244 7 6 2.6115 -0.6623 -3.5091 8 7 2.9245 -1.9394 -3.4498 9 14 2.7907 0.2696 -5.1181 10 1 1.5230 0.1793 -5.8862 11 1 3.0965 1.6946 -4.8334 12 1 3.8949 -0.3243 -5.9138 13 6 2.0399 -0.7212 1.2493 14 1 1.6784 -0.2068 2.1397 15 6 3.5728 -0.7273 1.2472 16 7 4.0351 -1.5827 2.3517 17 6 4.9542 -1.1415 3.2331 18 8 5.4702 -0.0509 3.0790 19 6 5.3334 -1.9792 4.3821 20 6 5.7057 -3.2829 4.2696 21 16 6.0748 -3.9418 5.7975 22 6 5.7231 -2.4309 6.6181 23 6 5.3550 -1.4999 5.7448 24 17 4.9371 0.1237 6.1953 25 6 3.4646 -2.9344 2.4650 26 6 1.9369 -2.8208 2.4078 27 8 1.5638 -2.0692 1.2504 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 2.2491 -1.6319 -1.1524 32 1 3.2479 -2.3967 -4.2418 33 1 3.9370 -1.1230 0.2991 34 1 3.9442 0.2876 1.3888 35 1 5.7600 -3.8267 3.3382 36 1 5.7995 -2.2779 7.6845 37 1 3.7642 -3.3812 3.4130 38 1 3.8179 -3.5524 1.6395 39 1 1.5758 -2.3142 3.3028 40 1 1.4988 -3.8173 2.3516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282915431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:35 Heat of formation + Delta-G solvation = -47.703834 kcal Electronic energy + Delta-G solvation = -26052.290112 eV Core-core repulsion = 22212.765960 eV Total energy + Delta-G solvation = -3839.524152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64633 -39.86003 -38.38285 -37.18993 -36.94973 -35.77267 -34.17567 -31.95202 -30.93397 -30.10880 -28.94474 -26.28559 -25.72065 -25.00769 -23.65373 -21.82149 -21.17031 -20.23457 -19.36260 -18.82395 -18.28709 -17.60730 -17.13164 -16.70451 -16.39968 -16.16953 -15.92930 -15.67579 -15.13037 -14.98280 -14.80596 -14.60577 -14.50422 -14.20029 -13.94270 -13.77095 -13.49335 -13.16085 -13.02701 -12.77694 -12.56532 -12.51939 -12.49567 -12.42953 -12.18398 -11.88057 -11.81595 -11.69013 -11.54941 -11.14903 -10.97309 -10.92669 -10.03582 -9.66790 -9.36469 -8.94638 -7.89427 -5.16432 -0.34236 0.22734 0.59229 0.74567 1.48281 1.49179 1.51131 1.57279 1.59487 1.93713 2.58175 2.78028 3.41066 3.44367 3.61380 3.69379 3.92287 3.95024 3.98899 4.14613 4.23371 4.28117 4.30376 4.38795 4.49869 4.60952 4.68223 4.74777 4.78098 4.83982 4.85136 4.99322 5.08844 5.19802 5.27624 5.54452 5.60160 6.21349 6.24823 6.33120 6.94525 7.39746 8.15053 8.41281 9.33759 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.002909 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.159055 B = 9621.458315 C = 9813.318188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.173 3.827 3 H 0.057 0.943 4 N -0.725 5.725 5 C -0.236 4.236 6 H 0.074 0.926 7 C -0.073 4.073 8 N -0.966 5.966 9 Si 0.966 3.034 10 H -0.289 1.289 11 H -0.272 1.272 12 H -0.298 1.298 13 C 0.094 3.906 14 H 0.074 0.926 15 C 0.098 3.902 16 N -0.603 5.603 17 C 0.573 3.427 18 O -0.568 6.568 19 C -0.167 4.167 20 C -0.215 4.215 21 S 0.327 5.673 22 C -0.226 4.226 23 C -0.042 4.042 24 Cl -0.051 7.051 25 C 0.063 3.937 26 C 0.043 3.957 27 O -0.381 6.381 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.378 0.622 32 H 0.249 0.751 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.194 0.806 36 H 0.204 0.796 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.656 -8.155 26.125 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.064 3.936 3 H 0.075 0.925 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.092 0.908 7 C -0.265 4.265 8 N -0.617 5.617 9 Si 0.796 3.204 10 H -0.216 1.216 11 H -0.197 1.197 12 H -0.225 1.225 13 C 0.035 3.965 14 H 0.092 0.908 15 C -0.026 4.026 16 N -0.335 5.335 17 C 0.360 3.640 18 O -0.448 6.448 19 C -0.186 4.186 20 C -0.353 4.353 21 S 0.593 5.407 22 C -0.362 4.362 23 C -0.080 4.080 24 Cl -0.022 7.022 25 C -0.058 4.058 26 C -0.034 4.034 27 O -0.300 6.300 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.211 0.789 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.211 0.789 36 H 0.221 0.779 37 H 0.143 0.857 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.262 -8.786 26.316 28.070 hybrid contribution -0.120 2.055 -1.789 2.727 sum 4.142 -6.730 24.528 25.769 Atomic orbital electron populations 1.22168 0.96893 1.01194 1.00527 1.20485 0.93749 0.94541 0.84788 0.92469 1.42473 1.78003 1.10510 1.05655 1.19612 1.34664 0.94105 0.88399 0.90814 1.25445 1.03203 0.96827 1.01064 1.69827 1.52692 1.10055 1.29103 0.85239 0.76760 0.78053 0.80314 1.21580 1.19718 1.22460 1.22599 0.91229 0.84129 0.98578 0.90844 1.22084 0.95549 0.95881 0.89042 1.48141 1.40912 1.16600 1.27894 1.18082 0.78621 0.85420 0.81845 1.90794 1.54483 1.23592 1.75937 1.19685 1.11641 0.94906 0.92348 1.25992 1.04421 0.97103 1.07831 1.82933 1.59950 1.07151 0.90701 1.25869 1.07559 0.97227 1.05527 1.20683 1.06933 0.88490 0.91899 1.98385 1.91931 1.19939 1.91957 1.22915 0.95371 0.82498 1.05056 1.23204 0.93195 0.98496 0.88525 1.88064 1.75345 1.23441 1.43128 0.91514 0.94227 0.93457 0.78893 0.94266 0.91880 0.90227 0.78893 0.77856 0.85734 0.90121 0.91930 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.41 9.35 71.98 0.67 -4.73 16 2 C 0.17 7.00 2.74 44.99 0.12 7.12 16 3 H 0.06 2.33 8.08 -2.39 -0.02 2.31 16 4 N -0.73 -36.77 4.28 -322.95 -1.38 -38.15 16 5 C -0.24 -13.19 9.93 84.03 0.83 -12.35 16 6 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 7 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 8 N -0.97 -59.50 13.06 21.65 0.28 -59.21 16 9 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 13 C 0.09 3.24 2.53 30.69 0.08 3.32 16 14 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 15 C 0.10 3.61 5.85 86.35 0.50 4.11 16 16 N -0.60 -18.30 3.02 -821.53 -2.48 -20.78 16 17 C 0.57 18.22 7.13 86.59 0.62 18.83 16 18 O -0.57 -22.91 16.21 -4.13 -0.07 -22.98 16 19 C -0.17 -3.84 5.05 -19.86 -0.10 -3.94 16 20 C -0.22 -3.18 8.42 67.31 0.57 -2.61 16 21 S 0.33 2.60 23.02 -56.49 -1.30 1.30 16 22 C -0.23 -2.77 11.00 66.64 0.73 -2.04 16 23 C -0.04 -0.86 6.49 22.68 0.15 -0.72 16 24 Cl -0.05 -1.23 28.47 -2.72 -0.08 -1.31 16 25 C 0.06 1.40 5.80 86.35 0.50 1.90 16 26 C 0.04 0.97 6.98 72.08 0.50 1.47 16 27 O -0.38 -12.63 9.22 -148.98 -1.37 -14.00 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.80 7.69 -2.39 -0.02 1.78 16 31 H 0.38 20.81 7.20 -92.70 -0.67 20.14 16 32 H 0.25 14.91 8.31 -92.70 -0.77 14.13 16 33 H 0.06 2.78 7.26 -2.39 -0.02 2.76 16 34 H 0.08 3.17 7.11 -2.39 -0.02 3.15 16 35 H 0.19 2.30 7.43 -2.91 -0.02 2.28 16 36 H 0.20 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.12 1.91 4.82 -2.38 -0.01 1.89 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.13 2.21 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -75.37 357.56 1.69 -73.68 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.41 Total: 25.81 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 5.65 Total: 6.58 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -3.58 Total: -118.14 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -1.44 Total: -36.98 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.30 Total: 1.30 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -75.37 1.69 -73.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282915431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.980 kcal (2) G-P(sol) polarization free energy of solvation -75.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds