Wall clock time and date at job start Wed Apr 1 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47545 * 2 1 4 4 C 1.53005 * 109.47330 * 119.99761 * 2 1 3 5 5 N 1.46496 * 109.47402 * 175.00261 * 4 2 1 6 6 C 1.34777 * 119.99904 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99959 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99945 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.47427 * 180.02562 * 8 6 5 10 10 C 1.76196 * 100.00157 * 180.02562 * 9 8 6 11 11 H 1.07992 * 120.00239 * 359.97438 * 10 9 8 12 12 C 1.38804 * 119.99716 * 180.02562 * 10 9 8 13 13 N 1.31626 * 119.99999 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99672 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47551 * 0.02562 * 14 12 10 16 16 H 1.48511 * 109.46766 * 119.99958 * 14 12 10 17 17 H 1.48494 * 109.47302 * 239.99585 * 14 12 10 18 18 N 1.46498 * 109.47439 * 239.99594 * 2 1 3 19 19 C 1.46503 * 119.99803 * 300.00427 * 18 2 1 20 20 C 1.34779 * 119.99934 * 119.99706 * 18 2 1 21 21 O 1.21558 * 120.00022 * 5.40263 * 20 18 2 22 22 C 1.47754 * 119.99560 * 185.40060 * 20 18 2 23 23 C 1.39349 * 124.10974 * 186.17421 * 22 20 18 24 24 N 1.30095 * 112.14387 * 179.97438 * 23 22 20 25 25 S 1.55922 * 108.75167 * 359.97438 * 24 23 22 26 26 N 1.31488 * 124.12113 * 5.87313 * 22 20 18 27 27 H 1.08992 * 109.47131 * 60.00267 * 1 2 3 28 28 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47124 * 300.00027 * 1 2 3 30 30 H 1.09004 * 109.47013 * 295.00265 * 4 2 1 31 31 H 1.08999 * 109.46719 * 54.99637 * 4 2 1 32 32 H 0.96994 * 120.00222 * 359.97438 * 5 4 2 33 33 H 1.09004 * 109.47419 * 300.00500 * 8 6 5 34 34 H 1.09005 * 109.46965 * 60.00719 * 8 6 5 35 35 H 0.97005 * 119.99954 * 180.02562 * 13 12 10 36 36 H 1.08995 * 109.47446 * 95.33764 * 19 18 2 37 37 H 1.08997 * 109.47312 * 335.33350 * 19 18 2 38 38 H 1.09006 * 109.46700 * 215.33237 * 19 18 2 39 39 H 1.07999 * 123.93615 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.1731 -1.4281 2.1913 7 8 3.5700 -1.8831 3.1401 8 6 5.6749 -1.5367 2.1308 9 16 6.2783 -2.3898 3.6087 10 6 8.0100 -2.3768 3.2839 11 1 8.3862 -1.9244 2.3784 12 6 8.8906 -2.9490 4.1916 13 7 8.4320 -3.5008 5.2951 14 14 10.7265 -2.9358 3.8469 15 1 10.9819 -2.2597 2.5497 16 1 11.4286 -2.2047 4.9323 17 1 11.2286 -4.3320 3.7853 18 7 2.0184 -0.6907 -1.1961 19 6 1.6644 -2.0933 -1.4278 20 6 2.7932 -0.0357 -2.0833 21 8 3.1680 1.0957 -1.8441 22 6 3.1871 -0.6929 -3.3466 23 6 4.0819 -0.1476 -4.2653 24 7 4.2611 -0.9227 -5.2946 25 16 3.3899 -2.2034 -5.1155 26 7 2.7405 -1.8660 -3.7382 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7517 -0.1582 2.1370 31 1 1.6054 -1.7197 1.2952 32 1 3.9824 -0.4628 0.4317 33 1 5.9630 -2.1003 1.2433 34 1 6.1098 -0.5383 2.0842 35 1 9.0475 -3.9004 5.9296 36 1 0.7914 -2.1450 -2.0784 37 1 1.4370 -2.5727 -0.4758 38 1 2.5016 -2.6057 -1.9019 39 1 4.5698 0.8074 -4.1377 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285598460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:24 Heat of formation + Delta-G solvation = 2.418576 kcal Electronic energy + Delta-G solvation = -25013.856778 eV Core-core repulsion = 21210.842554 eV Total energy + Delta-G solvation = -3803.014223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.67984 -40.00959 -38.92523 -36.92482 -34.61742 -33.66907 -32.42578 -31.86432 -29.41015 -27.99667 -27.17484 -26.01480 -25.37963 -23.98427 -21.43030 -20.34750 -19.92482 -19.72156 -17.86079 -17.65489 -16.95127 -16.68731 -16.24968 -16.14846 -15.61452 -15.14231 -15.06380 -14.80119 -14.26481 -14.04474 -13.56449 -13.43369 -13.16761 -13.05405 -12.94638 -12.69766 -12.63796 -12.40957 -12.19153 -11.81267 -11.78560 -11.59631 -11.29888 -11.10368 -11.06555 -11.01449 -10.75338 -10.40371 -9.80539 -9.67231 -9.43137 -9.09389 -9.07522 -8.89939 -8.23163 -6.49570 -6.21589 -3.91843 -0.02394 0.95272 1.11222 1.19106 2.44006 2.65179 3.03661 3.09730 3.21862 3.28579 3.33626 3.70819 3.91013 4.18527 4.20776 4.44759 4.66255 4.69813 4.85359 4.89503 5.06773 5.13737 5.14817 5.27693 5.28855 5.35552 5.52107 5.58703 5.66884 5.71483 5.81734 5.89695 5.92091 6.13666 6.15471 6.58966 6.82873 7.57121 7.60475 7.69297 8.35978 8.60231 9.24039 10.85897 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.002814 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.428107 B = 9948.184200 C =11732.202992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.112 0.888 4 C 0.112 3.888 5 N -0.735 5.735 6 C 0.533 3.467 7 O -0.518 6.518 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.280 1.280 18 N -0.589 5.589 19 C 0.083 3.917 20 C 0.602 3.398 21 O -0.521 6.521 22 C 0.011 3.989 23 C 0.092 3.908 24 N -0.576 5.576 25 S 0.711 5.289 26 N -0.537 5.537 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.397 0.603 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.268 0.732 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.782 5.011 -22.116 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 H 0.130 0.870 4 C -0.013 4.013 5 N -0.390 5.390 6 C 0.319 3.681 7 O -0.392 6.392 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.206 1.206 18 N -0.322 5.322 19 C -0.060 4.060 20 C 0.385 3.615 21 O -0.397 6.397 22 C -0.164 4.164 23 C -0.101 4.101 24 N -0.416 5.416 25 S 0.754 5.246 26 N -0.387 5.387 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.231 0.769 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -17.762 3.081 -21.496 28.054 hybrid contribution 2.308 2.031 -0.679 3.149 sum -15.454 5.112 -22.175 27.508 Atomic orbital electron populations 1.22054 0.93168 1.03135 1.03170 1.21530 0.95179 0.98392 0.82816 0.86986 1.21659 0.81421 1.01245 0.97013 1.45926 1.06742 1.61875 1.24475 1.20287 0.89494 0.76730 0.81595 1.90698 1.69859 1.46152 1.32513 1.23525 0.93621 1.05692 1.07536 1.85357 1.04608 1.73031 1.20259 1.22913 0.91550 1.44186 1.09667 0.90909 1.24990 0.99589 0.94543 0.94454 1.70028 1.35293 1.35571 1.09404 0.86119 0.82991 0.77975 0.78430 1.19622 1.20530 1.20566 1.47725 1.49321 1.13301 1.21833 1.22038 1.02220 0.80026 1.01728 1.16864 0.78627 0.84883 0.81170 1.90858 1.54716 1.17699 1.76385 1.22428 1.01624 0.91694 1.00647 1.23805 0.97014 1.01979 0.87339 1.72273 1.28330 1.11179 1.29847 1.79234 1.19254 1.18598 1.07562 1.72947 1.29162 1.18420 1.18198 0.91713 0.91670 0.90497 0.90081 0.91094 0.76857 0.89486 0.89212 0.92246 0.92006 0.90791 0.89464 0.76887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.19 37.16 0.34 -0.65 16 2 C 0.12 1.07 2.79 -67.93 -0.19 0.88 16 3 H 0.11 1.08 6.91 -51.93 -0.36 0.72 16 4 C 0.11 1.24 4.93 -4.04 -0.02 1.22 16 5 N -0.74 -10.25 5.39 -60.29 -0.32 -10.57 16 6 C 0.53 10.08 7.85 -10.99 -0.09 10.00 16 7 O -0.52 -11.67 15.86 5.56 0.09 -11.59 16 8 C -0.15 -3.18 6.16 36.00 0.22 -2.96 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 14 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 N -0.59 -5.30 2.24 -175.08 -0.39 -5.69 16 19 C 0.08 0.65 8.26 59.85 0.49 1.15 16 20 C 0.60 6.21 7.37 -12.37 -0.09 6.12 16 21 O -0.52 -6.50 16.15 5.31 0.09 -6.41 16 22 C 0.01 0.10 6.52 -83.71 -0.55 -0.45 16 23 C 0.09 0.79 11.23 -17.87 -0.20 0.59 16 24 N -0.58 -4.97 11.41 19.42 0.22 -4.74 16 25 S 0.71 4.51 23.69 -107.50 -2.55 1.97 16 26 N -0.54 -4.32 7.92 23.17 0.18 -4.14 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.80 6.86 -51.93 -0.36 0.44 16 32 H 0.40 5.12 7.87 -40.82 -0.32 4.80 16 33 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 34 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 36 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 37 H 0.07 0.57 6.54 -51.93 -0.34 0.23 16 38 H 0.09 0.75 5.88 -51.93 -0.31 0.45 16 39 H 0.21 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -35.93 361.34 -8.20 -44.13 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.58 Total: 1.62 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 0.12 Total: 2.80 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.42 Total: -50.69 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.00 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -4.76 Total: -1.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.93 -8.20 -44.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285598460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.547 kcal (2) G-P(sol) polarization free energy of solvation -35.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds