Wall clock time and date at job start Wed Apr 1 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47545 * 2 1 4 4 C 1.53005 * 109.47330 * 119.99761 * 2 1 3 5 5 N 1.46496 * 109.47402 * 175.00261 * 4 2 1 6 6 C 1.34777 * 119.99904 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99959 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99945 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.47427 * 180.02562 * 8 6 5 10 10 C 1.76196 * 100.00157 * 180.02562 * 9 8 6 11 11 H 1.07992 * 120.00239 * 359.97438 * 10 9 8 12 12 C 1.38804 * 119.99716 * 180.02562 * 10 9 8 13 13 N 1.31626 * 119.99999 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99672 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47551 * 0.02562 * 14 12 10 16 16 H 1.48511 * 109.46766 * 119.99958 * 14 12 10 17 17 H 1.48494 * 109.47302 * 239.99585 * 14 12 10 18 18 N 1.46498 * 109.47439 * 239.99594 * 2 1 3 19 19 C 1.46503 * 119.99803 * 300.00427 * 18 2 1 20 20 C 1.34779 * 119.99934 * 119.99706 * 18 2 1 21 21 O 1.21558 * 120.00022 * 5.40263 * 20 18 2 22 22 C 1.47754 * 119.99560 * 185.40060 * 20 18 2 23 23 C 1.39349 * 124.10974 * 186.17421 * 22 20 18 24 24 N 1.30095 * 112.14387 * 179.97438 * 23 22 20 25 25 S 1.55922 * 108.75167 * 359.97438 * 24 23 22 26 26 N 1.31488 * 124.12113 * 5.87313 * 22 20 18 27 27 H 1.08992 * 109.47131 * 60.00267 * 1 2 3 28 28 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47124 * 300.00027 * 1 2 3 30 30 H 1.09004 * 109.47013 * 295.00265 * 4 2 1 31 31 H 1.08999 * 109.46719 * 54.99637 * 4 2 1 32 32 H 0.96994 * 120.00222 * 359.97438 * 5 4 2 33 33 H 1.09004 * 109.47419 * 300.00500 * 8 6 5 34 34 H 1.09005 * 109.46965 * 60.00719 * 8 6 5 35 35 H 0.97005 * 119.99954 * 180.02562 * 13 12 10 36 36 H 1.08995 * 109.47446 * 95.33764 * 19 18 2 37 37 H 1.08997 * 109.47312 * 335.33350 * 19 18 2 38 38 H 1.09006 * 109.46700 * 215.33237 * 19 18 2 39 39 H 1.07999 * 123.93615 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.1731 -1.4281 2.1913 7 8 3.5700 -1.8831 3.1401 8 6 5.6749 -1.5367 2.1308 9 16 6.2783 -2.3898 3.6087 10 6 8.0100 -2.3768 3.2839 11 1 8.3862 -1.9244 2.3784 12 6 8.8906 -2.9490 4.1916 13 7 8.4320 -3.5008 5.2951 14 14 10.7265 -2.9358 3.8469 15 1 10.9819 -2.2597 2.5497 16 1 11.4286 -2.2047 4.9323 17 1 11.2286 -4.3320 3.7853 18 7 2.0184 -0.6907 -1.1961 19 6 1.6644 -2.0933 -1.4278 20 6 2.7932 -0.0357 -2.0833 21 8 3.1680 1.0957 -1.8441 22 6 3.1871 -0.6929 -3.3466 23 6 4.0819 -0.1476 -4.2653 24 7 4.2611 -0.9227 -5.2946 25 16 3.3899 -2.2034 -5.1155 26 7 2.7405 -1.8660 -3.7382 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7517 -0.1582 2.1370 31 1 1.6054 -1.7197 1.2952 32 1 3.9824 -0.4628 0.4317 33 1 5.9630 -2.1003 1.2433 34 1 6.1098 -0.5383 2.0842 35 1 9.0475 -3.9004 5.9296 36 1 0.7914 -2.1450 -2.0784 37 1 1.4370 -2.5727 -0.4758 38 1 2.5016 -2.6057 -1.9019 39 1 4.5698 0.8074 -4.1377 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285598460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:23 Heat of formation + Delta-G solvation = -24.074043 kcal Electronic energy + Delta-G solvation = -25015.005584 eV Core-core repulsion = 21210.842554 eV Total energy + Delta-G solvation = -3804.163030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.34769 -40.95890 -40.16021 -37.81110 -35.55819 -34.61657 -34.56151 -32.72186 -30.88657 -28.65840 -27.82453 -27.75796 -26.80776 -24.69660 -22.14418 -21.77501 -20.56376 -20.46814 -19.80085 -18.37187 -17.95394 -17.70477 -17.38640 -17.17570 -16.89705 -16.55361 -16.21859 -15.95374 -15.82661 -15.11555 -14.84292 -14.54839 -14.26904 -14.07958 -13.93070 -13.68795 -13.50764 -13.19299 -13.18036 -13.03551 -12.92051 -12.86441 -12.59581 -12.44516 -12.23408 -12.00417 -11.76564 -11.72822 -11.17320 -11.13464 -11.01760 -10.31046 -10.27047 -10.17158 -9.81224 -8.68402 -8.36604 -6.14558 -0.65104 0.36284 0.44023 0.63376 1.24559 1.40028 1.44686 1.56402 1.56604 1.74661 1.91798 2.23683 2.27234 2.97552 3.24038 3.29429 3.51414 3.65523 3.90360 4.00980 4.03667 4.17286 4.21727 4.24024 4.45317 4.48668 4.57309 4.69271 4.73195 4.77390 4.94896 5.05220 5.23035 5.26391 5.37370 5.40326 5.48757 6.10315 6.18230 6.37197 6.82635 7.04893 7.15870 8.72841 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.002814 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.428107 B = 9948.184200 C =11732.202992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.132 3.868 3 H 0.104 0.896 4 C 0.110 3.890 5 N -0.713 5.713 6 C 0.537 3.463 7 O -0.559 6.559 8 C -0.132 4.132 9 S -0.141 6.141 10 C -0.549 4.549 11 H 0.079 0.921 12 C 0.015 3.985 13 N -0.909 5.909 14 Si 0.998 3.002 15 H -0.259 1.259 16 H -0.273 1.273 17 H -0.272 1.272 18 N -0.588 5.588 19 C 0.085 3.915 20 C 0.600 3.400 21 O -0.549 6.549 22 C -0.006 4.006 23 C 0.088 3.912 24 N -0.602 5.602 25 S 0.778 5.222 26 N -0.545 5.545 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.406 0.594 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.272 0.728 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.831 5.121 -24.223 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.029 3.971 3 H 0.122 0.878 4 C -0.014 4.014 5 N -0.366 5.366 6 C 0.322 3.678 7 O -0.437 6.437 8 C -0.283 4.283 9 S 0.086 5.914 10 C -0.697 4.697 11 H 0.098 0.902 12 C -0.190 4.190 13 N -0.546 5.546 14 Si 0.820 3.180 15 H -0.183 1.183 16 H -0.198 1.198 17 H -0.197 1.197 18 N -0.320 5.320 19 C -0.058 4.058 20 C 0.384 3.616 21 O -0.427 6.427 22 C -0.179 4.179 23 C -0.104 4.104 24 N -0.443 5.443 25 S 0.820 5.180 26 N -0.397 5.397 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.241 0.759 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -17.842 3.217 -23.638 29.790 hybrid contribution 2.210 1.955 -0.167 2.956 sum -15.632 5.173 -23.805 28.945 Atomic orbital electron populations 1.22017 0.90907 1.03961 1.03924 1.21476 0.96720 0.97387 0.81533 0.87785 1.21888 0.79155 1.01904 0.98489 1.45730 1.08094 1.59745 1.23035 1.19942 0.88709 0.77039 0.82066 1.90688 1.70250 1.48379 1.34341 1.23372 0.95137 1.05514 1.04290 1.85475 1.05673 1.74840 1.25400 1.23228 0.91834 1.44491 1.10117 0.90242 1.26103 1.05146 0.93728 0.93984 1.70177 1.37348 1.36473 1.10579 0.84918 0.75936 0.78385 0.78783 1.18305 1.19806 1.19713 1.47808 1.48872 1.13726 1.21556 1.22083 1.02503 0.79157 1.02051 1.17033 0.78344 0.84629 0.81633 1.90838 1.55884 1.18860 1.77125 1.22225 1.02734 0.92292 1.00647 1.23887 0.96985 1.02348 0.87208 1.72178 1.29534 1.12318 1.30304 1.78978 1.16942 1.16568 1.05534 1.72796 1.29542 1.18133 1.19270 0.91284 0.90807 0.89421 0.90018 0.90713 0.75906 0.87853 0.87828 0.91906 0.90616 0.90625 0.90085 0.76255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.19 71.98 0.66 -0.90 16 2 C 0.13 2.08 2.79 44.99 0.13 2.21 16 3 H 0.10 1.88 6.91 -2.39 -0.02 1.87 16 4 C 0.11 2.29 4.93 86.38 0.43 2.72 16 5 N -0.71 -19.10 5.39 -463.06 -2.49 -21.59 16 6 C 0.54 20.13 7.85 87.66 0.69 20.82 16 7 O -0.56 -25.47 15.86 -3.02 -0.05 -25.52 16 8 C -0.13 -5.43 6.16 71.24 0.44 -5.00 16 9 S -0.14 -7.90 20.57 -56.49 -1.16 -9.06 16 10 C -0.55 -31.78 9.50 67.96 0.65 -31.13 16 11 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 12 C 0.02 0.88 5.49 84.86 0.47 1.35 16 13 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 14 Si 1.00 43.98 29.55 68.60 2.03 46.00 16 15 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 18 N -0.59 -9.70 2.24 -826.10 -1.85 -11.55 16 19 C 0.08 1.17 8.26 127.77 1.06 2.23 16 20 C 0.60 11.78 7.37 86.76 0.64 12.42 16 21 O -0.55 -13.39 16.15 -3.90 -0.06 -13.46 16 22 C -0.01 -0.11 6.52 41.98 0.27 0.16 16 23 C 0.09 1.41 11.23 85.22 0.96 2.37 16 24 N -0.60 -9.50 11.41 -92.46 -1.05 -10.56 16 25 S 0.78 8.31 23.69 -56.49 -1.34 6.97 16 26 N -0.55 -7.82 7.92 -80.62 -0.64 -8.45 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.67 7.67 -2.39 -0.02 0.65 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.07 1.57 6.86 -2.39 -0.02 1.55 16 32 H 0.41 9.88 7.87 -92.71 -0.73 9.15 16 33 H 0.10 3.90 8.14 -2.39 -0.02 3.89 16 34 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 35 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 36 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 37 H 0.08 1.03 6.54 -2.39 -0.02 1.01 16 38 H 0.08 1.26 5.88 -2.38 -0.01 1.25 16 39 H 0.22 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -78.62 361.34 0.41 -78.20 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.38 Total: 17.42 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 6.38 Total: 7.24 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -5.76 Total: -107.79 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.11 Total: -38.97 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -2.50 Total: -2.10 kcal Total: -78.62 0.41 -78.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285598460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.129 kcal (2) G-P(sol) polarization free energy of solvation -78.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds