Wall clock time and date at job start Wed Apr 1 2020 03:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31275 * 1 3 3 Si 1.86801 * 120.00174 * 2 1 4 4 H 1.48508 * 109.46816 * 274.97553 * 3 2 1 5 5 H 1.48498 * 109.47329 * 34.97327 * 3 2 1 6 6 H 1.48500 * 109.47499 * 154.97923 * 3 2 1 7 7 C 1.39003 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99811 * 174.02967 * 7 2 1 9 9 N 1.37296 * 120.00274 * 354.03499 * 7 2 1 10 10 C 1.36436 * 126.05586 * 185.90655 * 9 7 2 11 11 C 1.35790 * 107.49634 * 180.02562 * 10 9 7 12 12 N 1.40302 * 126.09950 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00044 * 179.97438 * 12 11 10 14 14 O 1.21416 * 119.99949 * 0.02562 * 13 12 11 15 15 C 1.49193 * 120.00003 * 180.02562 * 13 12 11 16 16 O 1.21397 * 120.00359 * 0.02562 * 15 13 12 17 17 N 1.34782 * 119.99725 * 179.97438 * 15 13 12 18 18 C 1.39859 * 119.99664 * 185.13414 * 17 15 13 19 19 C 1.38921 * 120.01006 * 213.18015 * 18 17 15 20 20 C 1.38136 * 120.06735 * 179.75867 * 19 18 17 21 21 C 1.38595 * 120.12287 * 0.44900 * 20 19 18 22 22 C 1.39313 * 119.95027 * 359.54925 * 21 20 19 23 23 C 1.38457 * 119.89969 * 0.22932 * 22 21 20 24 24 O 1.36508 * 108.63717 * 180.24911 * 22 21 20 25 25 C 1.43984 * 105.49686 * 342.69606 * 24 22 21 26 26 O 1.36576 * 131.43831 * 179.85769 * 21 20 19 27 27 C 1.40720 * 107.80109 * 0.26109 * 11 10 9 28 28 N 1.30878 * 108.37419 * 359.55368 * 27 11 10 29 29 H 0.97008 * 119.99710 * 0.02562 * 1 2 3 30 30 H 1.08002 * 126.25273 * 0.05112 * 10 9 7 31 31 H 0.96998 * 120.00050 * 0.02562 * 12 11 10 32 32 H 0.96994 * 120.00388 * 5.14127 * 17 15 13 33 33 H 1.08001 * 119.96695 * 359.97438 * 19 18 17 34 34 H 1.07997 * 119.94187 * 180.33079 * 20 19 18 35 35 H 1.08003 * 120.01208 * 180.02562 * 23 22 21 36 36 H 1.08994 * 110.56951 * 268.59603 * 25 24 22 37 37 H 1.08996 * 110.57100 * 145.72056 * 25 24 22 38 38 H 1.08001 * 125.81172 * 179.73354 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.3891 2.1071 -1.3949 5 1 1.5008 2.6201 0.8025 6 1 3.5930 1.4121 0.5921 7 6 2.0078 -1.2038 0.0005 8 1 3.0834 -1.2064 -0.0968 9 7 1.3269 -2.3896 0.1246 10 6 1.8865 -3.6272 0.2533 11 6 0.8728 -4.5258 0.3471 12 7 1.0100 -5.9147 0.4911 13 6 -0.0857 -6.6952 0.5732 14 8 -1.1915 -6.1964 0.5221 15 6 0.0602 -8.1720 0.7270 16 8 1.1658 -8.6706 0.7786 17 7 -1.0356 -8.9524 0.8096 18 6 -0.9015 -10.3216 1.0611 19 6 -1.8022 -11.2216 0.5055 20 6 -1.6680 -12.5746 0.7491 21 6 -0.6403 -13.0376 1.5556 22 6 0.2647 -12.1377 2.1142 23 6 0.1323 -10.7820 1.8660 24 8 1.1741 -12.8365 2.8545 25 6 0.5780 -14.1280 3.0771 26 8 -0.2970 -14.3003 1.9467 27 6 -0.3398 -3.8163 0.2674 28 7 -0.0652 -2.5430 0.1410 29 1 -0.4850 0.8401 -0.0004 30 1 2.9428 -3.8512 0.2768 31 1 1.8934 -6.3131 0.5324 32 1 -1.9171 -8.5645 0.6945 33 1 -2.6062 -10.8633 -0.1203 34 1 -2.3662 -13.2730 0.3118 35 1 0.8331 -10.0828 2.2978 36 1 0.0083 -14.1319 4.0064 37 1 1.3421 -14.9052 3.0919 38 1 -1.3287 -4.2487 0.3070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319986942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:59 Heat of formation + Delta-G solvation = 1.382863 kcal Electronic energy + Delta-G solvation = -27890.653806 eV Core-core repulsion = 23509.397848 eV Total energy + Delta-G solvation = -4381.255958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.100 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.46215 -40.95833 -39.80598 -38.57515 -37.63069 -36.56330 -35.07939 -34.13732 -33.22397 -30.86214 -30.39188 -29.58495 -28.11319 -26.30399 -25.50789 -24.38555 -23.45889 -22.61860 -21.13297 -20.47337 -19.58919 -19.11100 -18.29995 -18.02371 -17.62464 -17.33035 -16.92112 -16.15404 -15.78866 -15.57992 -15.32441 -15.20308 -14.79301 -14.36727 -14.24532 -14.20100 -13.85723 -13.69771 -13.39056 -13.27506 -13.14082 -13.05950 -13.03340 -11.94925 -11.77988 -11.67432 -11.55644 -11.33253 -11.24783 -10.92776 -10.57975 -10.37557 -10.21431 -9.33298 -9.28145 -9.00330 -8.93648 -8.18969 -8.09514 -6.85560 -6.65846 -4.32962 0.63762 0.89184 1.52378 2.22579 2.49556 2.88294 3.01222 3.06506 3.10547 3.11810 3.35725 3.63265 3.66249 3.83694 4.18073 4.29330 4.32383 4.46299 4.54894 4.68474 4.71833 4.88537 4.92487 4.92998 5.19484 5.31184 5.73124 5.77510 5.83877 5.91132 6.13792 6.21663 6.28657 6.65146 6.76223 6.81878 6.83708 6.98169 7.10648 7.55908 7.75459 7.95421 8.11070 8.36442 8.61848 9.25412 9.53599 10.30145 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.038817 B = 0.001797 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.162852 B =15580.792925 C =16136.591552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.322 4.322 8 H 0.119 0.881 9 N -0.137 5.137 10 C -0.075 4.075 11 C -0.073 4.073 12 N -0.577 5.577 13 C 0.485 3.515 14 O -0.519 6.519 15 C 0.516 3.484 16 O -0.503 6.503 17 N -0.645 5.645 18 C 0.163 3.837 19 C -0.132 4.132 20 C -0.078 4.078 21 C 0.012 3.988 22 C 0.054 3.946 23 C -0.105 4.105 24 O -0.306 6.306 25 C 0.213 3.787 26 O -0.310 6.310 27 C -0.024 4.024 28 N -0.261 5.261 29 H 0.276 0.724 30 H 0.150 0.850 31 H 0.410 0.590 32 H 0.428 0.572 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.606 -22.718 3.830 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.454 4.454 8 H 0.136 0.864 9 N 0.097 4.903 10 C -0.227 4.227 11 C -0.178 4.178 12 N -0.220 5.220 13 C 0.265 3.735 14 O -0.397 6.397 15 C 0.299 3.701 16 O -0.377 6.377 17 N -0.293 5.293 18 C 0.068 3.932 19 C -0.152 4.152 20 C -0.097 4.097 21 C -0.033 4.033 22 C 0.009 3.991 23 C -0.126 4.126 24 O -0.222 6.222 25 C 0.101 3.899 26 O -0.226 6.226 27 C -0.200 4.200 28 N -0.092 5.092 29 H 0.087 0.913 30 H 0.167 0.833 31 H 0.245 0.755 32 H 0.267 0.733 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.102 0.898 37 H 0.149 0.851 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.094 -21.453 3.723 21.874 hybrid contribution 0.974 -0.418 0.222 1.083 sum -1.121 -21.871 3.945 22.252 Atomic orbital electron populations 1.70208 1.06226 1.28233 1.34525 1.25676 0.95724 1.00412 0.95298 0.85791 0.79549 0.79806 0.78926 1.19569 1.19966 1.18646 1.19942 0.92288 0.80591 1.52604 0.86364 1.44579 1.04066 1.03809 1.37880 1.21312 0.96996 0.85618 1.18767 1.17234 0.94699 0.80869 1.25041 1.42112 1.08535 1.05357 1.65990 1.19308 0.85560 0.86112 0.82477 1.90683 1.25022 1.73939 1.50017 1.20563 0.84346 0.88577 0.76622 1.90780 1.25169 1.75306 1.46431 1.43108 1.11170 1.05580 1.69410 1.17185 0.96715 0.83164 0.96107 1.20686 1.01635 0.91159 1.01746 1.19794 0.95917 0.95005 0.98981 1.19802 0.98099 0.82737 1.02627 1.19447 0.89624 0.93007 0.96998 1.19925 1.00635 0.91777 1.00243 1.87397 1.39333 1.25606 1.69849 1.25633 0.90058 0.84836 0.89341 1.87365 1.63977 1.24066 1.47189 1.24153 0.97875 0.90943 1.07011 1.78271 0.90264 1.14944 1.25701 0.91294 0.83266 0.75468 0.73283 0.83639 0.84085 0.83285 0.89827 0.85142 0.80499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.75 11.84 55.50 0.66 -20.09 16 2 C 0.05 1.17 5.50 -17.51 -0.10 1.08 16 3 Si 0.94 18.37 29.56 -169.99 -5.02 13.35 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.32 -8.26 10.24 -14.82 -0.15 -8.41 16 8 H 0.12 2.70 7.84 -52.48 -0.41 2.29 16 9 N -0.14 -3.64 3.73 -11.40 -0.04 -3.68 16 10 C -0.08 -1.72 11.50 -16.38 -0.19 -1.91 16 11 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 12 N -0.58 -10.32 5.45 -10.49 -0.06 -10.37 16 13 C 0.49 8.19 7.85 -11.71 -0.09 8.09 16 14 O -0.52 -9.79 13.62 5.44 0.07 -9.72 16 15 C 0.52 7.29 7.62 -11.70 -0.09 7.20 16 16 O -0.50 -7.79 14.13 5.46 0.08 -7.72 16 17 N -0.65 -7.26 5.33 -10.32 -0.06 -7.32 16 18 C 0.16 1.77 6.28 -83.71 -0.53 1.24 16 19 C -0.13 -1.10 9.96 -39.37 -0.39 -1.49 16 20 C -0.08 -0.66 10.05 -39.49 -0.40 -1.06 16 21 C 0.01 0.13 7.15 -39.05 -0.28 -0.15 16 22 C 0.05 0.64 7.15 -39.10 -0.28 0.36 16 23 C -0.11 -1.29 8.67 -39.27 -0.34 -1.63 16 24 O -0.31 -3.42 11.40 -45.71 -0.52 -3.94 16 25 C 0.21 1.56 8.89 101.05 0.90 2.46 16 26 O -0.31 -3.05 11.41 -45.94 -0.52 -3.58 16 27 C -0.02 -0.60 10.85 -17.02 -0.18 -0.79 16 28 N -0.26 -7.32 10.41 30.81 0.32 -7.00 16 29 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.15 2.85 8.06 -52.49 -0.42 2.42 16 31 H 0.41 6.26 8.29 -40.82 -0.34 5.92 16 32 H 0.43 4.03 8.29 -40.82 -0.34 3.69 16 33 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.15 2.00 6.39 -52.48 -0.34 1.66 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.18 4.27 5.92 -52.49 -0.31 3.96 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -33.42 342.27 -5.62 -39.03 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -2.98 Total: 13.06 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.70 Total: 2.81 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.82 Total: -48.47 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.89 Total: -24.94 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.35 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.42 -5.62 -39.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319986942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.416 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds