Wall clock time and date at job start Wed Apr 1 2020 03:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31275 * 1 3 3 Si 1.86801 * 120.00174 * 2 1 4 4 H 1.48508 * 109.46816 * 274.97553 * 3 2 1 5 5 H 1.48498 * 109.47329 * 34.97327 * 3 2 1 6 6 H 1.48500 * 109.47499 * 154.97923 * 3 2 1 7 7 C 1.39003 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99811 * 174.02967 * 7 2 1 9 9 N 1.37296 * 120.00274 * 354.03499 * 7 2 1 10 10 C 1.36436 * 126.05586 * 185.90655 * 9 7 2 11 11 C 1.35790 * 107.49634 * 180.02562 * 10 9 7 12 12 N 1.40302 * 126.09950 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00044 * 179.97438 * 12 11 10 14 14 O 1.21416 * 119.99949 * 0.02562 * 13 12 11 15 15 C 1.49193 * 120.00003 * 180.02562 * 13 12 11 16 16 O 1.21397 * 120.00359 * 0.02562 * 15 13 12 17 17 N 1.34782 * 119.99725 * 179.97438 * 15 13 12 18 18 C 1.39859 * 119.99664 * 185.13414 * 17 15 13 19 19 C 1.38921 * 120.01006 * 213.18015 * 18 17 15 20 20 C 1.38136 * 120.06735 * 179.75867 * 19 18 17 21 21 C 1.38595 * 120.12287 * 0.44900 * 20 19 18 22 22 C 1.39313 * 119.95027 * 359.54925 * 21 20 19 23 23 C 1.38457 * 119.89969 * 0.22932 * 22 21 20 24 24 O 1.36508 * 108.63717 * 180.24911 * 22 21 20 25 25 C 1.43984 * 105.49686 * 342.69606 * 24 22 21 26 26 O 1.36576 * 131.43831 * 179.85769 * 21 20 19 27 27 C 1.40720 * 107.80109 * 0.26109 * 11 10 9 28 28 N 1.30878 * 108.37419 * 359.55368 * 27 11 10 29 29 H 0.97008 * 119.99710 * 0.02562 * 1 2 3 30 30 H 1.08002 * 126.25273 * 0.05112 * 10 9 7 31 31 H 0.96998 * 120.00050 * 0.02562 * 12 11 10 32 32 H 0.96994 * 120.00388 * 5.14127 * 17 15 13 33 33 H 1.08001 * 119.96695 * 359.97438 * 19 18 17 34 34 H 1.07997 * 119.94187 * 180.33079 * 20 19 18 35 35 H 1.08003 * 120.01208 * 180.02562 * 23 22 21 36 36 H 1.08994 * 110.56951 * 268.59603 * 25 24 22 37 37 H 1.08996 * 110.57100 * 145.72056 * 25 24 22 38 38 H 1.08001 * 125.81172 * 179.73354 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.3891 2.1071 -1.3949 5 1 1.5008 2.6201 0.8025 6 1 3.5930 1.4121 0.5921 7 6 2.0078 -1.2038 0.0005 8 1 3.0834 -1.2064 -0.0968 9 7 1.3269 -2.3896 0.1246 10 6 1.8865 -3.6272 0.2533 11 6 0.8728 -4.5258 0.3471 12 7 1.0100 -5.9147 0.4911 13 6 -0.0857 -6.6952 0.5732 14 8 -1.1915 -6.1964 0.5221 15 6 0.0602 -8.1720 0.7270 16 8 1.1658 -8.6706 0.7786 17 7 -1.0356 -8.9524 0.8096 18 6 -0.9015 -10.3216 1.0611 19 6 -1.8022 -11.2216 0.5055 20 6 -1.6680 -12.5746 0.7491 21 6 -0.6403 -13.0376 1.5556 22 6 0.2647 -12.1377 2.1142 23 6 0.1323 -10.7820 1.8660 24 8 1.1741 -12.8365 2.8545 25 6 0.5780 -14.1280 3.0771 26 8 -0.2970 -14.3003 1.9467 27 6 -0.3398 -3.8163 0.2674 28 7 -0.0652 -2.5430 0.1410 29 1 -0.4850 0.8401 -0.0004 30 1 2.9428 -3.8512 0.2768 31 1 1.8934 -6.3131 0.5324 32 1 -1.9171 -8.5645 0.6945 33 1 -2.6062 -10.8633 -0.1203 34 1 -2.3662 -13.2730 0.3118 35 1 0.8331 -10.0828 2.2978 36 1 0.0083 -14.1319 4.0064 37 1 1.3421 -14.9052 3.0919 38 1 -1.3287 -4.2487 0.3070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319986942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:59 Heat of formation + Delta-G solvation = -23.693915 kcal Electronic energy + Delta-G solvation = -27891.741216 eV Core-core repulsion = 23509.397848 eV Total energy + Delta-G solvation = -4382.343368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.100 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.19310 -42.22517 -41.44140 -39.91946 -38.67446 -37.30217 -36.37447 -35.51299 -34.91074 -32.30434 -31.62802 -30.48201 -29.80962 -27.38093 -26.77086 -25.73675 -24.27156 -23.60630 -22.88550 -21.78931 -21.26821 -20.22196 -19.31077 -19.20206 -18.84269 -18.23933 -17.80322 -17.44703 -17.21499 -16.99484 -16.76598 -16.32238 -15.74621 -15.67107 -15.51701 -15.19845 -15.04656 -14.98636 -14.87663 -14.55850 -14.07256 -14.00488 -13.81159 -13.52528 -13.39415 -13.01691 -12.90944 -12.75377 -12.49173 -12.15055 -12.08179 -11.98394 -11.08005 -11.03571 -10.87186 -10.67693 -10.14427 -9.82968 -8.88903 -8.63507 -8.49786 -6.26867 -0.27813 0.12073 0.37617 1.10516 1.28606 1.41717 1.58943 1.69437 1.73901 1.96309 2.11056 2.41022 2.45995 2.53845 2.60988 2.87955 3.06539 3.39522 3.44215 3.80014 3.95784 4.01873 4.06555 4.27600 4.39213 4.46710 4.49137 4.51997 4.93453 4.97360 4.98356 5.05608 5.06840 5.15506 5.19425 5.28957 5.38401 5.83690 5.93227 6.06279 6.22113 6.41386 6.61535 6.69924 6.99798 7.40763 7.62530 8.49678 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.038817 B = 0.001797 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.162852 B =15580.792925 C =16136.591552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.004 4.004 3 Si 1.018 2.982 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.245 1.245 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.163 5.163 10 C -0.073 4.073 11 C -0.058 4.058 12 N -0.578 5.578 13 C 0.492 3.508 14 O -0.536 6.536 15 C 0.527 3.473 16 O -0.517 6.517 17 N -0.627 5.627 18 C 0.145 3.855 19 C -0.112 4.112 20 C -0.072 4.072 21 C 0.008 3.992 22 C 0.034 3.966 23 C -0.123 4.123 24 O -0.329 6.329 25 C 0.204 3.796 26 O -0.319 6.319 27 C -0.045 4.045 28 N -0.309 5.309 29 H 0.278 0.722 30 H 0.188 0.812 31 H 0.424 0.576 32 H 0.438 0.562 33 H 0.180 0.820 34 H 0.173 0.827 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.161 0.839 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.174 -24.654 3.629 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.216 4.216 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.168 1.168 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.069 4.931 10 C -0.224 4.224 11 C -0.164 4.164 12 N -0.223 5.223 13 C 0.273 3.727 14 O -0.414 6.414 15 C 0.309 3.691 16 O -0.392 6.392 17 N -0.275 5.275 18 C 0.051 3.949 19 C -0.132 4.132 20 C -0.091 4.091 21 C -0.037 4.037 22 C -0.011 4.011 23 C -0.144 4.144 24 O -0.246 6.246 25 C 0.094 3.906 26 O -0.235 6.235 27 C -0.220 4.220 28 N -0.140 5.140 29 H 0.088 0.912 30 H 0.205 0.795 31 H 0.262 0.738 32 H 0.279 0.721 33 H 0.197 0.803 34 H 0.191 0.809 35 H 0.147 0.853 36 H 0.123 0.877 37 H 0.178 0.822 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.667 -23.456 3.531 23.778 hybrid contribution 0.776 -0.147 0.332 0.856 sum -0.892 -23.602 3.863 23.933 Atomic orbital electron populations 1.70370 1.08368 1.29287 1.36688 1.26863 0.96479 1.04262 0.94029 0.84592 0.78488 0.74194 0.79046 1.18930 1.20125 1.16806 1.20639 0.93491 0.80961 1.53378 0.84156 1.44839 1.03722 1.05145 1.39418 1.22011 0.98858 0.84613 1.16878 1.17258 0.93492 0.82780 1.22896 1.42035 1.09777 1.03701 1.66802 1.19834 0.84853 0.87386 0.80597 1.90674 1.25812 1.74801 1.50101 1.19876 0.84928 0.87145 0.77181 1.90793 1.25827 1.75019 1.47537 1.42929 1.10708 1.05786 1.68096 1.17331 0.97561 0.82845 0.97185 1.21051 1.01089 0.90638 1.00461 1.20224 0.95550 0.95515 0.97821 1.20120 0.98205 0.82757 1.02604 1.19583 0.90485 0.93155 0.97926 1.19886 1.01147 0.91977 1.01365 1.87356 1.40129 1.27052 1.70032 1.26136 0.90923 0.84133 0.89409 1.87341 1.64349 1.23780 1.48067 1.24288 0.98940 0.90885 1.07925 1.78162 0.91992 1.16533 1.27326 0.91208 0.79534 0.73813 0.72135 0.80282 0.80937 0.85289 0.87662 0.82195 0.80445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.02 11.84 21.66 0.26 -45.77 16 2 C 0.00 -0.20 5.50 84.96 0.47 0.26 16 3 Si 1.02 37.69 29.56 68.60 2.03 39.72 16 4 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.28 -10.15 7.11 99.48 0.71 -9.45 16 6 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 7 C -0.35 -18.30 10.24 84.02 0.86 -17.44 16 8 H 0.14 6.31 7.84 -2.91 -0.02 6.28 16 9 N -0.16 -8.84 3.73 -189.97 -0.71 -9.55 16 10 C -0.07 -3.29 11.50 83.41 0.96 -2.33 16 11 C -0.06 -2.58 6.90 37.82 0.26 -2.32 16 12 N -0.58 -20.28 5.45 -305.43 -1.66 -21.94 16 13 C 0.49 16.32 7.85 87.19 0.68 17.00 16 14 O -0.54 -20.10 13.62 -3.45 -0.05 -20.15 16 15 C 0.53 14.42 7.62 87.19 0.66 15.09 16 16 O -0.52 -15.71 14.13 -3.39 -0.05 -15.76 16 17 N -0.63 -13.20 5.33 -304.91 -1.62 -14.83 16 18 C 0.14 2.91 6.28 38.18 0.24 3.15 16 19 C -0.11 -1.52 9.96 22.41 0.22 -1.30 16 20 C -0.07 -0.99 10.05 22.33 0.22 -0.77 16 21 C 0.01 0.15 7.15 22.61 0.16 0.32 16 22 C 0.03 0.77 7.15 22.58 0.16 0.93 16 23 C -0.12 -2.98 8.67 22.47 0.19 -2.78 16 24 O -0.33 -7.21 11.40 -76.14 -0.87 -8.08 16 25 C 0.20 2.65 8.89 113.37 1.01 3.66 16 26 O -0.32 -5.65 11.41 -76.95 -0.88 -6.53 16 27 C -0.04 -2.31 10.85 85.44 0.93 -1.38 16 28 N -0.31 -17.93 10.41 -56.43 -0.59 -18.52 16 29 H 0.28 14.31 8.31 -92.70 -0.77 13.54 16 30 H 0.19 6.75 8.06 -2.91 -0.02 6.73 16 31 H 0.42 12.45 8.29 -92.71 -0.77 11.68 16 32 H 0.44 7.44 8.29 -92.71 -0.77 6.67 16 33 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 35 H 0.13 3.57 6.39 -2.91 -0.02 3.55 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.16 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.18 8.88 5.92 -2.91 -0.02 8.86 16 Total: -1.00 -76.00 342.27 2.54 -73.46 By element: Atomic # 1 Polarization: 36.20 SS G_CDS: -0.35 Total: 35.85 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 7.04 Total: 12.10 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -4.33 Total: -110.61 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -1.84 Total: -50.52 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -76.00 2.54 -73.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319986942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.763 kcal (2) G-P(sol) polarization free energy of solvation -75.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds