Wall clock time and date at job start Wed Apr 1 2020 03:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35665 * 116.99644 * 2 1 4 4 C 1.38565 * 120.11983 * 359.97438 * 3 2 1 5 5 C 1.38224 * 120.23458 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.48358 * 0.02655 * 5 4 3 7 7 S 1.76194 * 119.88485 * 179.97438 * 6 5 4 8 8 N 1.65605 * 107.22239 * 114.99846 * 7 6 5 9 9 O 1.42096 * 106.40463 * 228.53883 * 7 6 5 10 10 O 1.42098 * 106.40085 * 1.45944 * 7 6 5 11 11 C 1.38536 * 120.23708 * 359.97438 * 6 5 4 12 12 O 1.35654 * 120.12224 * 179.97438 * 11 6 5 13 13 C 1.42902 * 116.99922 * 89.99836 * 12 11 6 14 14 C 1.40229 * 120.11943 * 179.72757 * 3 2 1 15 15 C 1.47240 * 120.23469 * 359.97431 * 14 3 2 16 16 O 1.21624 * 119.99970 * 90.00196 * 15 14 3 17 17 N 1.34776 * 120.00145 * 269.99792 * 15 14 3 18 18 C 1.46500 * 120.00242 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.46836 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00686 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99833 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00033 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99927 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46863 * 89.99654 * 23 21 19 25 25 H 1.48500 * 109.47010 * 209.99393 * 23 21 19 26 26 H 1.48496 * 109.47095 * 329.99572 * 23 21 19 27 27 H 1.09002 * 109.47382 * 60.00116 * 1 2 3 28 28 H 1.09001 * 109.46938 * 300.00103 * 1 2 3 29 29 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.88486 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.76093 * 180.02562 * 5 4 3 32 32 H 0.96993 * 120.00357 * 150.00140 * 8 7 6 33 33 H 0.97002 * 119.99551 * 330.00440 * 8 7 6 34 34 H 1.08999 * 109.47609 * 300.00481 * 13 12 11 35 35 H 1.09002 * 109.46993 * 60.00301 * 13 12 11 36 36 H 1.08998 * 109.46890 * 179.97438 * 13 12 11 37 37 H 0.97007 * 119.99545 * 0.02562 * 17 15 14 38 38 H 1.08998 * 109.46990 * 300.00365 * 18 17 15 39 39 H 1.08997 * 109.46848 * 60.00450 * 18 17 15 40 40 H 0.96998 * 119.99980 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2925 2.3725 -0.0005 5 6 1.9175 3.6053 -0.0011 6 6 3.2975 3.6922 -0.0016 7 16 4.0777 5.2720 -0.0030 8 7 4.8947 5.4166 1.4302 9 8 5.0642 5.2315 -1.0248 10 8 3.0335 6.2352 0.0314 11 6 4.0689 2.5415 -0.0011 12 8 5.4226 2.6294 -0.0022 13 6 6.0709 2.6727 1.2706 14 6 3.4451 1.2852 0.0058 15 6 4.2547 0.0554 0.0124 16 8 4.5936 -0.4553 -1.0381 17 7 4.6203 -0.5044 1.1826 18 6 5.4263 -1.7277 1.1893 19 6 5.6969 -2.1432 2.6123 20 1 5.3071 -1.5552 3.4301 21 6 6.4412 -3.2748 2.8705 22 7 6.6778 -3.6371 4.1124 23 14 7.1148 -4.2924 1.4561 24 1 8.4627 -3.7920 1.0844 25 1 7.2122 -5.7146 1.8720 26 1 6.2052 -4.1794 0.2878 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2141 2.3160 -0.0014 31 1 1.3237 4.5074 -0.0011 32 1 5.7011 5.9535 1.4768 33 1 4.5666 4.9643 2.2232 34 1 5.7214 3.5423 1.8271 35 1 5.8368 1.7661 1.8286 36 1 7.1491 2.7422 1.1269 37 1 4.3497 -0.0973 2.0205 38 1 4.8853 -2.5220 0.6750 39 1 6.3716 -1.5427 0.6792 40 1 7.2017 -4.4330 4.2940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320923095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:37 Heat of formation + Delta-G solvation = -141.847773 kcal Electronic energy + Delta-G solvation = -28985.021150 eV Core-core repulsion = 24700.705446 eV Total energy + Delta-G solvation = -4284.315704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.04795 -39.34609 -38.46770 -37.35571 -36.67497 -35.95858 -34.35507 -33.57214 -32.47225 -31.55954 -30.43858 -28.12265 -27.83877 -26.93798 -24.29125 -22.84665 -22.05455 -20.50502 -19.68749 -19.08991 -18.33287 -17.70091 -17.58179 -17.27939 -16.62781 -16.44552 -16.26331 -15.84898 -15.63053 -15.34610 -15.21485 -15.02942 -14.24626 -14.20642 -13.74663 -13.53301 -13.29656 -12.97519 -12.88411 -12.40879 -12.37391 -12.21155 -12.10116 -12.07410 -11.98778 -11.69861 -11.51046 -11.41878 -11.10748 -10.80762 -10.72684 -10.24654 -10.01484 -9.55832 -9.45551 -9.18323 -8.94263 -8.82599 -8.23538 -6.26448 -4.29011 0.19291 0.47315 0.66715 2.66231 2.72932 2.99316 3.07300 3.24300 3.31175 3.38666 3.40343 3.52405 3.73965 4.27679 4.30260 4.40706 4.68459 4.77801 4.84676 4.89701 5.03677 5.07968 5.09284 5.19287 5.23116 5.36130 5.40522 5.59594 5.62614 5.69518 5.73004 5.95396 6.73056 6.74801 6.86249 7.02173 7.05845 7.12293 7.31842 8.04621 8.41267 8.67508 8.80942 9.33606 10.85233 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.003775 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.302555 B = 7415.403352 C = 8677.169777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.294 6.294 3 C 0.230 3.770 4 C -0.239 4.239 5 C 0.043 3.957 6 C -0.743 4.743 7 S 2.710 3.290 8 N -1.249 6.249 9 O -0.944 6.944 10 O -0.967 6.967 11 C 0.268 3.732 12 O -0.322 6.322 13 C 0.014 3.986 14 C -0.192 4.192 15 C 0.564 3.436 16 O -0.535 6.535 17 N -0.695 5.695 18 C 0.220 3.780 19 C -0.543 4.543 20 H 0.079 0.921 21 C 0.080 3.920 22 N -0.892 5.892 23 Si 0.875 3.125 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.260 1.260 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.147 0.853 31 H 0.156 0.844 32 H 0.423 0.577 33 H 0.417 0.583 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.394 0.606 38 H 0.027 0.973 39 H 0.023 0.977 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.336 17.408 -2.480 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.204 6.204 3 C 0.181 3.819 4 C -0.259 4.259 5 C 0.023 3.977 6 C -0.831 4.831 7 S 2.797 3.203 8 N -0.924 5.924 9 O -0.934 6.934 10 O -0.956 6.956 11 C 0.221 3.779 12 O -0.239 6.239 13 C -0.079 4.079 14 C -0.197 4.197 15 C 0.347 3.653 16 O -0.413 6.413 17 N -0.343 5.343 18 C 0.098 3.902 19 C -0.581 4.581 20 H 0.097 0.903 21 C -0.124 4.124 22 N -0.529 5.529 23 Si 0.701 3.299 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.185 1.185 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.165 0.835 31 H 0.173 0.827 32 H 0.253 0.747 33 H 0.245 0.755 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.128 0.872 37 H 0.228 0.772 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.911 17.251 -4.097 20.819 hybrid contribution -0.086 -1.137 0.602 1.290 sum -10.997 16.114 -3.496 19.819 Atomic orbital electron populations 1.23286 0.77074 1.05118 1.01824 1.86222 1.22441 1.25844 1.85914 1.19045 0.90432 0.85077 0.87329 1.21303 1.00861 0.91561 1.12125 1.20706 0.91494 0.98563 0.86903 1.30679 1.04795 1.20401 1.27184 1.01357 0.73368 0.72880 0.72720 1.53349 1.43472 1.66929 1.28681 1.93647 1.59014 1.86198 1.54512 1.93587 1.58317 1.57473 1.86228 1.17675 0.83370 0.89089 0.87771 1.86102 1.13741 1.93613 1.30408 1.23615 0.99134 1.02352 0.82821 1.19760 0.91551 0.95246 1.13169 1.17557 0.79850 0.82931 0.84999 1.90781 1.55596 1.63186 1.31735 1.46177 1.52991 1.28423 1.06667 1.19558 0.90339 0.81835 0.98433 1.21037 1.35258 1.11536 0.90270 0.90287 1.24768 0.95111 0.96788 0.95765 1.69873 1.38971 1.25491 1.18533 0.86843 0.80354 0.79661 0.83030 1.19743 1.20864 1.18463 0.91919 0.91793 0.87317 0.83502 0.82695 0.74656 0.75493 0.91986 0.91659 0.87178 0.77207 0.95485 0.95861 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.29 -4.09 9.95 -18.70 -0.19 -4.28 16 3 C 0.23 3.21 6.70 -38.71 -0.26 2.95 16 4 C -0.24 -2.44 9.02 -39.47 -0.36 -2.79 16 5 C 0.04 0.43 9.53 -39.58 -0.38 0.05 16 6 C -0.74 -8.93 5.92 -39.46 -0.23 -9.17 16 7 S 2.71 29.41 5.86 -107.50 -0.63 28.78 16 8 N -1.25 -7.96 7.39 60.35 0.45 -7.52 16 9 O -0.94 -13.98 17.29 -62.60 -1.08 -15.06 16 10 O -0.97 -11.94 16.95 -57.17 -0.97 -12.91 16 11 C 0.27 4.02 5.68 -38.71 -0.22 3.80 16 12 O -0.32 -5.02 8.64 -28.79 -0.25 -5.27 16 13 C 0.01 0.17 11.02 101.05 1.11 1.28 16 14 C -0.19 -3.22 5.65 -104.73 -0.59 -3.81 16 15 C 0.56 11.74 6.32 -12.60 -0.08 11.66 16 16 O -0.54 -13.37 17.11 5.26 0.09 -13.28 16 17 N -0.69 -14.32 5.15 -62.63 -0.32 -14.65 16 18 C 0.22 5.39 4.50 -5.20 -0.02 5.36 16 19 C -0.54 -14.49 9.83 -34.44 -0.34 -14.83 16 20 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 21 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 22 N -0.89 -25.83 13.96 55.43 0.77 -25.06 16 23 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 27 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 29 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.15 0.97 6.28 -52.49 -0.33 0.64 16 31 H 0.16 1.17 7.31 -52.49 -0.38 0.79 16 32 H 0.42 1.89 8.96 -34.48 -0.31 1.58 16 33 H 0.42 1.69 8.04 -34.47 -0.28 1.42 16 34 H 0.06 0.48 4.77 -51.93 -0.25 0.23 16 35 H 0.06 0.83 7.71 -51.93 -0.40 0.42 16 36 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.39 7.11 8.27 -40.82 -0.34 6.78 16 38 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 39 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -39.65 353.81 -6.21 -45.86 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.27 Total: 3.74 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -0.47 Total: -2.22 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.90 Total: -47.22 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -2.40 Total: -50.79 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: 29.41 SS G_CDS: -0.63 Total: 28.78 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -39.65 -6.21 -45.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320923095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.989 kcal (2) G-P(sol) polarization free energy of solvation -39.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds