Wall clock time and date at job start Wed Apr 1 2020 03:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35665 * 116.99644 * 2 1 4 4 C 1.38565 * 120.11983 * 359.97438 * 3 2 1 5 5 C 1.38224 * 120.23458 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.48358 * 0.02655 * 5 4 3 7 7 S 1.76194 * 119.88485 * 179.97438 * 6 5 4 8 8 N 1.65605 * 107.22239 * 114.99846 * 7 6 5 9 9 O 1.42096 * 106.40463 * 228.53883 * 7 6 5 10 10 O 1.42098 * 106.40085 * 1.45944 * 7 6 5 11 11 C 1.38536 * 120.23708 * 359.97438 * 6 5 4 12 12 O 1.35654 * 120.12224 * 179.97438 * 11 6 5 13 13 C 1.42902 * 116.99922 * 89.99836 * 12 11 6 14 14 C 1.40229 * 120.11943 * 179.72757 * 3 2 1 15 15 C 1.47240 * 120.23469 * 359.97431 * 14 3 2 16 16 O 1.21624 * 119.99970 * 90.00196 * 15 14 3 17 17 N 1.34776 * 120.00145 * 269.99792 * 15 14 3 18 18 C 1.46500 * 120.00242 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.46836 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00686 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99833 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00033 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99927 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46863 * 89.99654 * 23 21 19 25 25 H 1.48500 * 109.47010 * 209.99393 * 23 21 19 26 26 H 1.48496 * 109.47095 * 329.99572 * 23 21 19 27 27 H 1.09002 * 109.47382 * 60.00116 * 1 2 3 28 28 H 1.09001 * 109.46938 * 300.00103 * 1 2 3 29 29 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.88486 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.76093 * 180.02562 * 5 4 3 32 32 H 0.96993 * 120.00357 * 150.00140 * 8 7 6 33 33 H 0.97002 * 119.99551 * 330.00440 * 8 7 6 34 34 H 1.08999 * 109.47609 * 300.00481 * 13 12 11 35 35 H 1.09002 * 109.46993 * 60.00301 * 13 12 11 36 36 H 1.08998 * 109.46890 * 179.97438 * 13 12 11 37 37 H 0.97007 * 119.99545 * 0.02562 * 17 15 14 38 38 H 1.08998 * 109.46990 * 300.00365 * 18 17 15 39 39 H 1.08997 * 109.46848 * 60.00450 * 18 17 15 40 40 H 0.96998 * 119.99980 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2925 2.3725 -0.0005 5 6 1.9175 3.6053 -0.0011 6 6 3.2975 3.6922 -0.0016 7 16 4.0777 5.2720 -0.0030 8 7 4.8947 5.4166 1.4302 9 8 5.0642 5.2315 -1.0248 10 8 3.0335 6.2352 0.0314 11 6 4.0689 2.5415 -0.0011 12 8 5.4226 2.6294 -0.0022 13 6 6.0709 2.6727 1.2706 14 6 3.4451 1.2852 0.0058 15 6 4.2547 0.0554 0.0124 16 8 4.5936 -0.4553 -1.0381 17 7 4.6203 -0.5044 1.1826 18 6 5.4263 -1.7277 1.1893 19 6 5.6969 -2.1432 2.6123 20 1 5.3071 -1.5552 3.4301 21 6 6.4412 -3.2748 2.8705 22 7 6.6778 -3.6371 4.1124 23 14 7.1148 -4.2924 1.4561 24 1 8.4627 -3.7920 1.0844 25 1 7.2122 -5.7146 1.8720 26 1 6.2052 -4.1794 0.2878 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2141 2.3160 -0.0014 31 1 1.3237 4.5074 -0.0011 32 1 5.7011 5.9535 1.4768 33 1 4.5666 4.9643 2.2232 34 1 5.7214 3.5423 1.8271 35 1 5.8368 1.7661 1.8286 36 1 7.1491 2.7422 1.1269 37 1 4.3497 -0.0973 2.0205 38 1 4.8853 -2.5220 0.6750 39 1 6.3716 -1.5427 0.6792 40 1 7.2017 -4.4330 4.2940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320923095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:37 Heat of formation + Delta-G solvation = -177.685006 kcal Electronic energy + Delta-G solvation = -28986.575169 eV Core-core repulsion = 24700.705446 eV Total energy + Delta-G solvation = -4285.869723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.12682 -40.36255 -40.03270 -38.29791 -37.63281 -36.92094 -36.26312 -34.48340 -34.20886 -32.73058 -31.36313 -29.95979 -28.60010 -27.91928 -25.58488 -24.02495 -23.58332 -21.98484 -20.67051 -20.23213 -19.31971 -18.92250 -18.56885 -18.29091 -18.02420 -17.50411 -17.36210 -17.01612 -16.82601 -16.56836 -16.23600 -16.15042 -15.95801 -15.74904 -14.98907 -14.71847 -14.49114 -14.36362 -14.00869 -13.81424 -13.78214 -13.22506 -13.19671 -13.14128 -13.06615 -12.83091 -12.74734 -12.55523 -12.33081 -12.28256 -11.97594 -11.71375 -11.64381 -11.15537 -10.97884 -10.94055 -10.20035 -10.08409 -9.91318 -8.42379 -6.49113 -0.66111 -0.46188 -0.32090 1.29923 1.33173 1.43615 1.46192 1.78788 1.86758 2.15289 2.25589 2.30243 2.46291 2.66172 2.92966 3.30561 3.55148 3.72963 3.91881 4.04478 4.18064 4.24012 4.24919 4.30546 4.35027 4.45889 4.65534 4.69795 4.70816 4.76797 4.84976 4.95585 5.14187 5.19211 5.24165 5.35992 6.00644 6.02605 6.07062 6.32705 6.48213 6.65391 7.07771 7.23310 8.71866 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.003775 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.302555 B = 7415.403352 C = 8677.169777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.329 6.329 3 C 0.224 3.776 4 C -0.222 4.222 5 C 0.054 3.946 6 C -0.744 4.744 7 S 2.734 3.266 8 N -1.233 6.233 9 O -0.986 6.986 10 O -0.978 6.978 11 C 0.259 3.741 12 O -0.349 6.349 13 C 0.003 3.997 14 C -0.231 4.231 15 C 0.569 3.431 16 O -0.587 6.587 17 N -0.688 5.688 18 C 0.232 3.768 19 C -0.543 4.543 20 H 0.063 0.937 21 C 0.034 3.966 22 N -0.926 5.926 23 Si 0.930 3.070 24 H -0.264 1.264 25 H -0.271 1.271 26 H -0.266 1.266 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.191 0.809 31 H 0.190 0.810 32 H 0.434 0.566 33 H 0.430 0.570 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.118 0.882 37 H 0.407 0.593 38 H 0.011 0.989 39 H 0.013 0.987 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.201 19.249 -2.267 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.241 6.241 3 C 0.175 3.825 4 C -0.241 4.241 5 C 0.035 3.965 6 C -0.831 4.831 7 S 2.820 3.180 8 N -0.915 5.915 9 O -0.976 6.976 10 O -0.967 6.967 11 C 0.213 3.787 12 O -0.266 6.266 13 C -0.089 4.089 14 C -0.236 4.236 15 C 0.355 3.645 16 O -0.468 6.468 17 N -0.337 5.337 18 C 0.109 3.891 19 C -0.580 4.580 20 H 0.082 0.918 21 C -0.167 4.167 22 N -0.564 5.564 23 Si 0.754 3.246 24 H -0.189 1.189 25 H -0.196 1.196 26 H -0.190 1.190 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.208 0.792 31 H 0.207 0.793 32 H 0.268 0.732 33 H 0.262 0.738 34 H 0.118 0.882 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.242 0.758 38 H 0.029 0.971 39 H 0.031 0.969 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.795 19.110 -3.841 23.316 hybrid contribution 0.400 -1.643 0.611 1.798 sum -12.394 17.467 -3.231 21.660 Atomic orbital electron populations 1.23686 0.74221 1.06491 1.04095 1.86179 1.25543 1.26490 1.85867 1.19205 0.89566 0.86426 0.87300 1.21717 1.02677 0.89880 1.09831 1.21226 0.90845 0.99901 0.84502 1.30814 1.05684 1.19545 1.27044 1.00482 0.72680 0.72032 0.72770 1.52948 1.43740 1.67018 1.27748 1.93601 1.60285 1.86623 1.57065 1.93575 1.58850 1.57575 1.86695 1.17813 0.83292 0.89365 0.88274 1.86059 1.14532 1.93779 1.32258 1.23884 0.99709 1.03338 0.82013 1.19571 0.92705 0.93631 1.17739 1.18141 0.78960 0.83670 0.83736 1.90729 1.57625 1.65116 1.33318 1.45987 1.52565 1.27402 1.07727 1.19174 0.90217 0.83036 0.96665 1.21162 1.34780 1.11316 0.90778 0.91840 1.25469 0.95472 0.97910 0.97812 1.69954 1.39963 1.26345 1.20158 0.85977 0.79800 0.78828 0.80030 1.18907 1.19551 1.19032 0.89798 0.89196 0.86674 0.79172 0.79268 0.73190 0.73826 0.88157 0.93254 0.86365 0.75776 0.97117 0.96919 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -8.89 9.95 -89.81 -0.89 -9.78 16 3 C 0.22 5.95 6.70 22.83 0.15 6.10 16 4 C -0.22 -3.72 9.02 22.34 0.20 -3.51 16 5 C 0.05 0.89 9.53 22.27 0.21 1.11 16 6 C -0.74 -16.38 5.92 22.35 0.13 -16.24 16 7 S 2.73 53.78 5.86 -56.49 -0.33 53.45 16 8 N -1.23 -12.64 7.39 37.02 0.27 -12.37 16 9 O -0.99 -28.40 17.29 -122.81 -2.12 -30.52 16 10 O -0.98 -21.30 16.95 -128.00 -2.17 -23.47 16 11 C 0.26 7.67 5.68 22.83 0.13 7.80 16 12 O -0.35 -10.99 8.64 -80.01 -0.69 -11.68 16 13 C 0.00 0.07 11.02 113.37 1.25 1.32 16 14 C -0.23 -7.80 5.65 -19.93 -0.11 -7.91 16 15 C 0.57 24.57 6.32 86.61 0.55 25.12 16 16 O -0.59 -30.66 17.11 -4.11 -0.07 -30.73 16 17 N -0.69 -29.40 5.15 -470.30 -2.42 -31.82 16 18 C 0.23 11.72 4.50 85.63 0.38 12.10 16 19 C -0.54 -29.60 9.83 25.60 0.25 -29.35 16 20 H 0.06 3.59 7.84 -2.91 -0.02 3.57 16 21 C 0.03 1.92 5.47 84.66 0.46 2.38 16 22 N -0.93 -54.11 13.96 21.45 0.30 -53.81 16 23 Si 0.93 44.07 27.47 68.60 1.88 45.95 16 24 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 26 H -0.27 -12.76 6.54 99.48 0.65 -12.11 16 27 H 0.08 0.77 7.66 -2.39 -0.02 0.75 16 28 H 0.09 0.73 7.66 -2.39 -0.02 0.71 16 29 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.19 1.44 6.28 -2.91 -0.02 1.42 16 31 H 0.19 1.86 7.31 -2.91 -0.02 1.84 16 32 H 0.43 2.79 8.96 -96.75 -0.87 1.92 16 33 H 0.43 2.21 8.04 -96.74 -0.78 1.43 16 34 H 0.10 1.40 4.77 -2.39 -0.01 1.39 16 35 H 0.05 1.28 7.71 -2.39 -0.02 1.26 16 36 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.41 15.18 8.27 -92.70 -0.77 14.42 16 38 H 0.01 0.58 7.20 -2.39 -0.02 0.57 16 39 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 40 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -89.01 353.81 -2.84 -91.85 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -1.32 Total: 12.79 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 4.72 Total: 0.14 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -1.85 Total: -98.00 kcal Atomic # 8 Polarization: -100.23 SS G_CDS: -5.95 Total: -106.18 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Atomic # 16 Polarization: 53.78 SS G_CDS: -0.33 Total: 53.45 kcal Total: -89.01 -2.84 -91.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320923095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.834 kcal (2) G-P(sol) polarization free energy of solvation -89.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds