Wall clock time and date at job start Wed Apr 1 2020 03:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42092 * 110.54464 * 2 1 4 4 O 1.42108 * 110.54230 * 223.24719 * 2 1 3 5 5 C 1.76201 * 104.44851 * 111.62887 * 2 1 3 6 6 C 1.34177 * 125.44051 * 89.97114 * 5 2 1 7 7 C 1.47026 * 105.95242 * 180.02562 * 6 5 2 8 8 C 1.47374 * 127.19118 * 180.02562 * 7 6 5 9 9 O 1.21619 * 119.99945 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00284 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00071 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46959 * 179.97438 * 11 10 8 13 13 O 1.42898 * 112.94697 * 53.41120 * 12 11 10 14 14 C 1.53947 * 113.74157 * 281.67790 * 12 11 10 15 15 N 1.47589 * 86.11780 * 222.04587 * 14 12 11 16 16 C 1.36933 * 134.49299 * 204.63969 * 15 14 12 17 17 H 1.08000 * 120.00008 * 180.02562 * 16 15 14 18 18 C 1.38816 * 119.99955 * 359.97438 * 16 15 14 19 19 N 1.31619 * 120.00120 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99757 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47031 * 90.00514 * 20 18 16 22 22 H 1.48500 * 109.47432 * 210.00008 * 20 18 16 23 23 H 1.48499 * 109.47530 * 330.00552 * 20 18 16 24 24 C 1.47584 * 91.01208 * 24.64069 * 15 14 12 25 25 C 1.36422 * 105.61531 * 0.02562 * 7 6 5 26 26 O 1.33648 * 108.39435 * 359.97438 * 25 7 6 27 27 H 1.09000 * 109.46856 * 308.37639 * 1 2 3 28 28 H 1.09002 * 109.46829 * 68.37350 * 1 2 3 29 29 H 1.09000 * 109.47177 * 188.37602 * 1 2 3 30 30 H 1.07999 * 127.02292 * 359.97438 * 6 5 2 31 31 H 0.97006 * 119.99417 * 359.97438 * 10 8 7 32 32 H 1.08996 * 109.47743 * 300.00188 * 11 10 8 33 33 H 1.08999 * 109.47179 * 60.00397 * 11 10 8 34 34 H 0.96700 * 113.99854 * 309.66797 * 13 12 11 35 35 H 1.09004 * 113.77052 * 336.34727 * 14 12 11 36 36 H 1.09003 * 113.77325 * 107.74928 * 14 12 11 37 37 H 0.97005 * 119.99882 * 179.97438 * 19 18 16 38 38 H 1.08994 * 113.76654 * 221.05709 * 24 15 14 39 39 H 1.09004 * 113.86869 * 89.66814 * 24 15 14 40 40 H 1.08001 * 125.79864 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3305 0.0000 4 8 2.3127 -0.9693 -0.9117 5 6 2.2537 -0.6289 1.5861 6 6 2.4473 -1.9229 1.8837 7 6 2.7927 -1.9617 3.3123 8 6 3.0999 -3.1538 4.1225 9 8 3.0821 -4.2573 3.6116 10 7 3.3995 -3.0213 5.4298 11 6 3.7043 -4.2064 6.2353 12 6 4.0080 -3.7813 7.6733 13 8 2.9773 -2.9732 8.2449 14 6 5.4247 -3.2099 7.8646 15 7 5.4659 -3.9988 9.1113 16 6 6.1582 -3.8979 10.2884 17 1 6.0036 -4.6269 11.0700 18 6 7.0596 -2.8591 10.4766 19 7 7.2484 -1.9708 9.5238 20 14 8.0035 -2.7210 12.0826 21 1 9.2777 -3.4761 11.9744 22 1 8.2970 -1.2926 12.3631 23 1 7.1864 -3.2846 13.1871 24 6 4.4613 -4.9402 8.5796 25 6 2.7695 -0.6635 3.7311 26 8 2.4475 0.1099 2.6898 27 1 -0.3633 0.6380 0.8056 28 1 -0.3633 0.3788 -0.9554 29 1 -0.3633 -1.0167 0.1497 30 1 2.3652 -2.7641 1.2114 31 1 3.4133 -2.1411 5.8374 32 1 2.8478 -4.8805 6.2285 33 1 4.5717 -4.7168 5.8168 34 1 2.7103 -2.2267 7.6913 35 1 6.1380 -3.5424 7.1105 36 1 5.4456 -2.1321 8.0260 37 1 7.8780 -1.2447 9.6555 38 1 3.7131 -5.2439 9.3118 39 1 4.8900 -5.7817 8.0353 40 1 2.9770 -0.3193 4.7335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325214978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:14 Heat of formation + Delta-G solvation = -62.219086 kcal Electronic energy + Delta-G solvation = -27281.040575 eV Core-core repulsion = 23000.177830 eV Total energy + Delta-G solvation = -4280.862745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.07302 -39.87103 -38.61099 -37.67907 -36.53506 -35.03549 -34.19800 -33.42918 -32.05986 -30.95885 -30.06861 -28.58447 -26.26011 -25.09623 -23.83948 -22.81276 -21.89786 -20.98407 -19.84140 -19.35614 -18.89850 -17.24632 -17.13021 -16.80391 -16.65785 -16.27803 -16.24593 -16.06714 -15.57793 -15.18946 -14.77045 -14.26646 -14.02637 -13.88993 -13.82038 -13.73331 -13.55505 -13.23119 -13.18143 -12.78326 -12.66902 -12.56487 -12.33814 -12.05699 -11.87857 -11.59215 -11.13367 -10.98776 -10.81430 -10.53357 -10.45566 -10.29099 -9.87040 -9.72141 -9.59784 -9.36026 -9.07869 -8.87943 -6.96605 -5.83131 -3.14971 -0.64360 0.64357 1.15111 1.96776 2.48772 2.97617 3.07313 3.27756 3.36417 3.41315 3.43207 3.67724 4.09926 4.17483 4.22335 4.37981 4.39712 4.40906 4.70082 4.83583 4.95917 5.05837 5.12245 5.17000 5.21406 5.50343 5.55842 5.64176 5.92286 6.15666 6.17022 6.28982 6.42779 6.47633 6.92524 7.07766 7.26584 7.42927 7.89794 7.97131 8.04422 8.97928 9.64334 10.49340 11.34280 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.002103 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.634648 B =13310.909567 C =13998.141570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.532 3.468 3 O -0.918 6.918 4 O -0.915 6.915 5 C -0.570 4.570 6 C -0.034 4.034 7 C -0.248 4.248 8 C 0.587 3.413 9 O -0.532 6.532 10 N -0.718 5.718 11 C 0.104 3.896 12 C 0.062 3.938 13 O -0.524 6.524 14 C 0.144 3.856 15 N -0.602 5.602 16 C -0.219 4.219 17 H 0.082 0.918 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.915 3.085 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.137 3.863 25 C 0.069 3.931 26 O -0.118 6.118 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.179 0.821 31 H 0.396 0.604 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.360 0.640 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.254 0.746 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.707 5.286 -18.791 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.704 3.296 3 O -0.916 6.916 4 O -0.912 6.912 5 C -0.698 4.698 6 C -0.054 4.054 7 C -0.254 4.254 8 C 0.374 3.626 9 O -0.410 6.410 10 N -0.370 5.370 11 C -0.021 4.021 12 C 0.019 3.981 13 O -0.328 6.328 14 C 0.018 3.982 15 N -0.328 5.328 16 C -0.347 4.347 17 H 0.099 0.901 18 C -0.205 4.205 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.010 3.990 25 C -0.005 4.005 26 O -0.011 6.011 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.155 0.845 30 H 0.197 0.803 31 H 0.231 0.769 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.205 0.795 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -15.867 4.724 -18.987 25.191 hybrid contribution 0.293 0.314 1.392 1.457 sum -15.574 5.038 -17.595 24.031 Atomic orbital electron populations 1.30195 1.24134 1.12644 1.12520 1.05008 0.78269 0.74502 0.71800 1.93620 1.77429 1.35755 1.84767 1.93669 1.78001 1.62386 1.57154 1.35322 1.24060 1.00143 1.10242 1.22986 0.92275 0.95956 0.94227 1.21771 1.14142 0.94137 0.95309 1.17085 0.76904 0.87322 0.81330 1.90815 1.52178 1.26408 1.71598 1.45766 1.70860 1.11111 1.09271 1.22124 1.01981 0.87227 0.90725 1.23804 0.89941 0.95512 0.88812 1.86646 1.55745 1.42820 1.47544 1.22909 0.88728 0.99001 0.87573 1.45662 1.47330 1.27399 1.12381 1.18998 1.16434 1.09038 0.90190 0.90069 1.24775 0.99759 0.97636 0.98291 1.69790 1.38799 1.16048 1.32443 0.86079 0.79832 0.76979 0.82622 1.21589 1.21604 1.20567 1.22549 0.91303 0.91589 0.93568 1.25159 0.93646 0.89036 0.92662 1.83943 1.66308 1.35848 1.15004 0.84426 0.84260 0.84543 0.80330 0.76925 0.90766 0.89921 0.79469 0.94762 0.90376 0.93649 0.92577 0.93146 0.75765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.10 10.80 101.05 1.09 -0.01 16 2 S 2.53 15.97 5.94 -107.50 -0.64 15.33 16 3 O -0.92 -9.17 17.95 -58.50 -1.05 -10.22 16 4 O -0.91 -8.56 17.69 -57.54 -1.02 -9.57 16 5 C -0.57 -4.83 6.94 29.30 0.20 -4.63 16 6 C -0.03 -0.33 10.63 -37.45 -0.40 -0.73 16 7 C -0.25 -2.63 6.31 -103.27 -0.65 -3.29 16 8 C 0.59 7.71 7.81 -12.54 -0.10 7.61 16 9 O -0.53 -8.94 16.98 5.26 0.09 -8.85 16 10 N -0.72 -8.47 5.33 -61.40 -0.33 -8.80 16 11 C 0.10 1.47 5.28 -4.04 -0.02 1.45 16 12 C 0.06 1.07 1.52 -89.69 -0.14 0.93 16 13 O -0.52 -8.84 13.51 -35.23 -0.48 -9.32 16 14 C 0.14 3.15 6.92 -2.97 -0.02 3.13 16 15 N -0.60 -15.14 3.70 -177.76 -0.66 -15.80 16 16 C -0.22 -6.11 10.70 -15.06 -0.16 -6.27 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -26.78 11.38 55.49 0.63 -26.15 16 20 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.14 2.72 8.34 -2.97 -0.02 2.69 16 25 C 0.07 0.55 11.61 30.08 0.35 0.90 16 26 O -0.12 -1.05 10.52 7.66 0.08 -0.97 16 27 H 0.14 0.08 8.14 -51.92 -0.42 -0.34 16 28 H 0.14 0.00 8.14 -51.92 -0.42 -0.42 16 29 H 0.14 0.06 8.14 -51.92 -0.42 -0.36 16 30 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.40 3.59 6.28 -40.82 -0.26 3.33 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 34 H 0.36 4.25 7.61 45.56 0.35 4.59 16 35 H 0.03 0.77 8.03 -51.93 -0.42 0.35 16 36 H 0.08 1.88 7.15 -51.93 -0.37 1.51 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.23 0.85 7.47 -52.49 -0.39 0.46 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -41.39 363.82 -6.88 -48.27 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.01 Total: 2.16 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 0.04 Total: 1.46 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.35 Total: -50.75 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -2.37 Total: -38.93 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 15.97 SS G_CDS: -0.64 Total: 15.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -41.39 -6.88 -48.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325214978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.951 kcal (2) G-P(sol) polarization free energy of solvation -41.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds