Wall clock time and date at job start Wed Apr 1 2020 03:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42092 * 110.54464 * 2 1 4 4 O 1.42108 * 110.54230 * 223.24719 * 2 1 3 5 5 C 1.76201 * 104.44851 * 111.62887 * 2 1 3 6 6 C 1.34177 * 125.44051 * 89.97114 * 5 2 1 7 7 C 1.47026 * 105.95242 * 180.02562 * 6 5 2 8 8 C 1.47374 * 127.19118 * 180.02562 * 7 6 5 9 9 O 1.21619 * 119.99945 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00284 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00071 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46959 * 179.97438 * 11 10 8 13 13 O 1.42898 * 112.94697 * 53.41120 * 12 11 10 14 14 C 1.53947 * 113.74157 * 281.67790 * 12 11 10 15 15 N 1.47589 * 86.11780 * 222.04587 * 14 12 11 16 16 C 1.36933 * 134.49299 * 204.63969 * 15 14 12 17 17 H 1.08000 * 120.00008 * 180.02562 * 16 15 14 18 18 C 1.38816 * 119.99955 * 359.97438 * 16 15 14 19 19 N 1.31619 * 120.00120 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99757 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47031 * 90.00514 * 20 18 16 22 22 H 1.48500 * 109.47432 * 210.00008 * 20 18 16 23 23 H 1.48499 * 109.47530 * 330.00552 * 20 18 16 24 24 C 1.47584 * 91.01208 * 24.64069 * 15 14 12 25 25 C 1.36422 * 105.61531 * 0.02562 * 7 6 5 26 26 O 1.33648 * 108.39435 * 359.97438 * 25 7 6 27 27 H 1.09000 * 109.46856 * 308.37639 * 1 2 3 28 28 H 1.09002 * 109.46829 * 68.37350 * 1 2 3 29 29 H 1.09000 * 109.47177 * 188.37602 * 1 2 3 30 30 H 1.07999 * 127.02292 * 359.97438 * 6 5 2 31 31 H 0.97006 * 119.99417 * 359.97438 * 10 8 7 32 32 H 1.08996 * 109.47743 * 300.00188 * 11 10 8 33 33 H 1.08999 * 109.47179 * 60.00397 * 11 10 8 34 34 H 0.96700 * 113.99854 * 309.66797 * 13 12 11 35 35 H 1.09004 * 113.77052 * 336.34727 * 14 12 11 36 36 H 1.09003 * 113.77325 * 107.74928 * 14 12 11 37 37 H 0.97005 * 119.99882 * 179.97438 * 19 18 16 38 38 H 1.08994 * 113.76654 * 221.05709 * 24 15 14 39 39 H 1.09004 * 113.86869 * 89.66814 * 24 15 14 40 40 H 1.08001 * 125.79864 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3305 0.0000 4 8 2.3127 -0.9693 -0.9117 5 6 2.2537 -0.6289 1.5861 6 6 2.4473 -1.9229 1.8837 7 6 2.7927 -1.9617 3.3123 8 6 3.0999 -3.1538 4.1225 9 8 3.0821 -4.2573 3.6116 10 7 3.3995 -3.0213 5.4298 11 6 3.7043 -4.2064 6.2353 12 6 4.0080 -3.7813 7.6733 13 8 2.9773 -2.9732 8.2449 14 6 5.4247 -3.2099 7.8646 15 7 5.4659 -3.9988 9.1113 16 6 6.1582 -3.8979 10.2884 17 1 6.0036 -4.6269 11.0700 18 6 7.0596 -2.8591 10.4766 19 7 7.2484 -1.9708 9.5238 20 14 8.0035 -2.7210 12.0826 21 1 9.2777 -3.4761 11.9744 22 1 8.2970 -1.2926 12.3631 23 1 7.1864 -3.2846 13.1871 24 6 4.4613 -4.9402 8.5796 25 6 2.7695 -0.6635 3.7311 26 8 2.4475 0.1099 2.6898 27 1 -0.3633 0.6380 0.8056 28 1 -0.3633 0.3788 -0.9554 29 1 -0.3633 -1.0167 0.1497 30 1 2.3652 -2.7641 1.2114 31 1 3.4133 -2.1411 5.8374 32 1 2.8478 -4.8805 6.2285 33 1 4.5717 -4.7168 5.8168 34 1 2.7103 -2.2267 7.6913 35 1 6.1380 -3.5424 7.1105 36 1 5.4456 -2.1321 8.0260 37 1 7.8780 -1.2447 9.6555 38 1 3.7131 -5.2439 9.3118 39 1 4.8900 -5.7817 8.0353 40 1 2.9770 -0.3193 4.7335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325214978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:13 Heat of formation + Delta-G solvation = -56.978092 kcal Electronic energy + Delta-G solvation = -27280.813308 eV Core-core repulsion = 23000.177830 eV Total energy + Delta-G solvation = -4280.635478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.45796 -41.92909 -40.19436 -38.34782 -36.51910 -35.36560 -34.93806 -33.80716 -33.01541 -32.43791 -29.96458 -28.60706 -28.09759 -28.02603 -26.04641 -23.68984 -21.99032 -21.50522 -20.93781 -20.76776 -19.30186 -19.13025 -17.91357 -17.63132 -17.13575 -16.89286 -16.86452 -16.66123 -16.35986 -15.92628 -15.78515 -15.53045 -15.21605 -14.73569 -14.60071 -14.54912 -14.34920 -14.21408 -14.11591 -14.01394 -13.60469 -13.34701 -12.92208 -12.80173 -12.52814 -12.41574 -12.31896 -12.23645 -12.09489 -11.60267 -11.27967 -11.01216 -10.75036 -10.58115 -10.45919 -10.30637 -9.82983 -9.77976 -9.19504 -8.58462 -4.10923 -1.62638 0.32714 0.78415 0.90592 0.99494 1.61277 1.87085 1.96976 2.06116 2.08163 2.35127 2.48203 2.70841 2.80615 3.05973 3.26904 3.31522 3.42380 3.94257 4.07162 4.17485 4.23128 4.30275 4.37524 4.41991 4.42623 4.50323 4.64376 4.74764 5.09551 5.14153 5.16351 5.22347 5.31632 5.50848 5.65473 5.83098 5.96018 6.08260 6.23486 6.25124 6.51544 6.62992 7.29899 7.54857 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.002103 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.634648 B =13310.909567 C =13998.141570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.685 4.685 2 S 1.804 4.196 3 O -1.138 7.138 4 O -1.156 7.156 5 C -0.382 4.382 6 C -0.300 4.300 7 C -0.260 4.260 8 C 0.608 3.392 9 O -0.588 6.588 10 N -0.712 5.712 11 C 0.098 3.902 12 C 0.081 3.919 13 O -0.536 6.536 14 C 0.045 3.955 15 N -0.435 5.435 16 C 0.380 3.620 17 H 0.285 0.715 18 C -0.085 4.085 19 N -0.554 5.554 20 Si 1.037 2.963 21 H -0.247 1.247 22 H -0.274 1.274 23 H -0.200 1.200 24 C 0.100 3.900 25 C -0.078 4.078 26 O -0.190 6.190 27 H 0.030 0.970 28 H -0.006 1.006 29 H 0.022 0.978 30 H 0.076 0.924 31 H 0.412 0.588 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.403 0.597 35 H 0.158 0.842 36 H 0.136 0.864 37 H 0.375 0.625 38 H 0.166 0.834 39 H 0.187 0.813 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.173 -24.304 73.142 82.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 1.961 4.039 3 O -1.135 7.135 4 O -1.153 7.153 5 C -0.514 4.514 6 C -0.334 4.334 7 C -0.265 4.265 8 C 0.399 3.601 9 O -0.470 6.470 10 N -0.367 5.367 11 C -0.025 4.025 12 C 0.037 3.963 13 O -0.345 6.345 14 C -0.076 4.076 15 N -0.103 5.103 16 C 0.201 3.799 17 H 0.300 0.700 18 C -0.321 4.321 19 N -0.179 5.179 20 Si 0.849 3.151 21 H -0.170 1.170 22 H -0.199 1.199 23 H -0.120 1.120 24 C -0.018 4.018 25 C -0.152 4.152 26 O -0.089 6.089 27 H 0.049 0.951 28 H 0.014 0.986 29 H 0.041 0.959 30 H 0.094 0.906 31 H 0.249 0.751 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.255 0.745 35 H 0.175 0.825 36 H 0.154 0.846 37 H 0.194 0.806 38 H 0.184 0.816 39 H 0.204 0.796 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 28.267 -24.658 72.047 81.227 hybrid contribution -0.462 1.237 -1.449 1.960 sum 27.804 -23.421 70.598 79.408 Atomic orbital electron populations 1.29973 1.56919 0.97146 0.95847 1.67072 0.83547 0.72373 0.80864 1.92232 1.84472 1.48658 1.88176 1.92278 1.85345 1.64372 1.73315 1.39842 1.01080 1.01580 1.08877 1.21560 1.21684 0.95572 0.94596 1.21473 1.16180 0.94582 0.94255 1.17188 0.74499 0.86219 0.82187 1.90665 1.54542 1.28405 1.73362 1.45258 1.72683 1.11368 1.07423 1.22050 1.03788 0.88189 0.88508 1.22918 0.87782 0.94177 0.91382 1.86479 1.54835 1.44951 1.48264 1.25516 0.97328 1.02188 0.82584 1.50969 1.24586 1.22970 1.11796 1.26667 0.76008 0.91719 0.85525 0.69961 1.28789 1.00675 0.94795 1.07807 1.69859 1.13466 1.03133 1.31428 0.84108 0.78860 0.81327 0.70757 1.17023 1.19890 1.12023 1.24972 0.88042 0.92424 0.96364 1.25089 1.04579 0.89624 0.95934 1.84127 1.69046 1.38604 1.17170 0.95055 0.98647 0.95865 0.90562 0.75073 0.90244 0.88443 0.74456 0.82493 0.84614 0.80604 0.81608 0.79622 0.73992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -60.79 10.80 113.37 1.22 -59.56 16 2 S 1.80 173.10 5.94 -56.49 -0.34 172.76 16 3 O -1.14 -114.56 17.95 -126.73 -2.27 -116.84 16 4 O -1.16 -118.66 17.69 -127.65 -2.26 -120.92 16 5 C -0.38 -32.48 6.94 66.89 0.46 -32.01 16 6 C -0.30 -23.69 10.63 23.65 0.25 -23.43 16 7 C -0.26 -14.95 6.31 -18.99 -0.12 -15.07 16 8 C 0.61 25.32 7.81 86.65 0.68 26.00 16 9 O -0.59 -29.23 16.98 -4.09 -0.07 -29.30 16 10 N -0.71 -13.00 5.33 -466.43 -2.49 -15.48 16 11 C 0.10 0.44 5.28 86.38 0.46 0.90 16 12 C 0.08 -0.78 1.52 -10.13 -0.02 -0.80 16 13 O -0.54 2.90 13.51 -148.98 -2.01 0.89 16 14 C 0.04 -0.64 6.92 86.48 0.60 -0.04 16 15 N -0.43 10.15 3.70 -720.12 -2.66 7.49 16 16 C 0.38 -11.37 10.70 84.03 0.90 -10.47 16 17 H 0.29 -12.25 7.83 -2.91 -0.02 -12.27 16 18 C -0.08 2.03 5.50 84.86 0.47 2.49 16 19 N -0.55 9.20 11.38 21.65 0.25 9.44 16 20 Si 1.04 -22.61 29.55 68.60 2.03 -20.58 16 21 H -0.25 4.39 7.11 99.48 0.71 5.10 16 22 H -0.27 3.84 7.11 99.48 0.71 4.55 16 23 H -0.20 4.85 7.11 99.48 0.71 5.56 16 24 C 0.10 -2.20 8.34 86.48 0.72 -1.48 16 25 C -0.08 -4.09 11.61 67.40 0.78 -3.31 16 26 O -0.19 -13.88 10.52 4.51 0.05 -13.83 16 27 H 0.03 2.58 8.14 -2.39 -0.02 2.56 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H 0.02 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 6.44 8.06 -2.91 -0.02 6.41 16 31 H 0.41 4.43 6.28 -92.70 -0.58 3.85 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.31 8.04 -2.39 -0.02 0.29 16 34 H 0.40 -1.89 7.61 -74.06 -0.56 -2.45 16 35 H 0.16 -2.25 8.03 -2.38 -0.02 -2.27 16 36 H 0.14 -1.71 7.15 -2.39 -0.02 -1.72 16 37 H 0.37 -6.16 8.31 -92.70 -0.77 -6.93 16 38 H 0.17 -4.24 8.14 -2.39 -0.02 -4.26 16 39 H 0.19 -4.86 8.10 -2.39 -0.02 -4.87 16 40 H 0.24 7.57 7.47 -2.91 -0.02 7.55 16 Total: -1.00 -236.66 363.82 -3.41 -240.07 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -0.04 Total: 3.08 kcal Atomic # 6 Polarization: -123.19 SS G_CDS: 6.41 Total: -116.79 kcal Atomic # 7 Polarization: 6.35 SS G_CDS: -4.90 Total: 1.45 kcal Atomic # 8 Polarization: -273.43 SS G_CDS: -6.57 Total: -280.00 kcal Atomic # 14 Polarization: -22.61 SS G_CDS: 2.03 Total: -20.58 kcal Atomic # 16 Polarization: 173.10 SS G_CDS: -0.34 Total: 172.76 kcal Total: -236.66 -3.41 -240.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325214978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.093 kcal (2) G-P(sol) polarization free energy of solvation -236.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -240.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds