Wall clock time and date at job start Wed Apr 1 2020 03:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99932 * 2 1 4 4 H 1.48499 * 109.47052 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46994 * 119.99800 * 3 2 1 6 6 H 1.48498 * 109.46721 * 240.00152 * 3 2 1 7 7 C 1.37875 * 120.00140 * 180.27708 * 2 1 3 8 8 H 1.07994 * 120.00207 * 152.17643 * 7 2 1 9 9 C 1.50707 * 119.99980 * 332.17027 * 7 2 1 10 10 H 1.09003 * 109.46703 * 54.17435 * 9 7 2 11 11 N 1.46498 * 109.47297 * 174.17224 * 9 7 2 12 12 C 1.34767 * 120.00039 * 205.00196 * 11 9 7 13 13 O 1.21585 * 120.00229 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99941 * 180.02562 * 12 11 9 15 15 C 1.46498 * 120.00083 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47198 * 179.97438 * 15 14 12 17 17 C 1.40070 * 119.02619 * 89.99977 * 16 15 14 18 18 C 1.35599 * 121.94833 * 179.97438 * 17 16 15 19 19 C 1.40849 * 119.38418 * 0.02562 * 18 17 16 20 20 N 1.31015 * 138.56374 * 179.97438 * 19 18 17 21 21 O 1.21470 * 109.08729 * 180.02562 * 20 19 18 22 22 N 1.21464 * 116.28598 * 359.97438 * 21 20 19 23 23 C 1.31016 * 109.08981 * 0.02562 * 22 21 20 24 24 C 1.35597 * 119.03010 * 269.72539 * 16 15 14 25 25 C 1.53002 * 109.47310 * 294.17834 * 9 7 2 26 26 F 1.39904 * 109.47165 * 56.80993 * 25 9 7 27 27 F 1.39898 * 109.47073 * 176.81188 * 25 9 7 28 28 F 1.39898 * 109.46934 * 296.81032 * 25 9 7 29 29 H 0.96997 * 120.00172 * 174.46880 * 1 2 3 30 30 H 0.97003 * 119.99743 * 25.00739 * 11 9 7 31 31 H 0.96998 * 119.99939 * 359.97438 * 14 12 11 32 32 H 1.08997 * 109.47234 * 299.99502 * 15 14 12 33 33 H 1.08997 * 109.47408 * 59.99684 * 15 14 12 34 34 H 1.08008 * 119.02670 * 359.97438 * 17 16 15 35 35 H 1.07997 * 120.30830 * 180.02562 * 18 17 16 36 36 H 1.08001 * 120.30354 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0058 8 1 2.9908 -1.2460 -0.4426 9 6 1.3818 -2.4266 0.5976 10 1 0.4039 -2.5972 0.1471 11 7 2.2444 -3.5834 0.3447 12 6 1.7181 -4.8238 0.3194 13 8 0.5272 -4.9828 0.5060 14 7 2.5118 -5.8880 0.0872 15 6 1.9396 -7.2363 0.0592 16 6 3.0299 -8.2391 -0.2180 17 6 3.7250 -8.8026 0.8597 18 6 4.7158 -9.7104 0.6785 19 6 5.0628 -10.1031 -0.6289 20 7 5.9119 -10.9067 -1.2203 21 8 5.7543 -10.8359 -2.4227 22 7 4.8883 -10.0762 -2.8078 23 6 4.3265 -9.5057 -1.7708 24 6 3.3054 -8.5734 -1.5029 25 6 1.2209 -2.2304 2.1064 26 9 0.4571 -1.0836 2.3488 27 9 0.5769 -3.3444 2.6555 28 9 2.4818 -2.0839 2.6946 29 1 -0.4850 -0.8361 -0.0810 30 1 3.1945 -3.4565 0.1955 31 1 3.4618 -5.7611 -0.0620 32 1 1.4799 -7.4560 1.0227 33 1 1.1850 -7.2946 -0.7252 34 1 3.4639 -8.5053 1.8647 35 1 5.2342 -10.1284 1.5288 36 1 2.7499 -8.1254 -2.3136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365533201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:56 Heat of formation + Delta-G solvation = -64.327788 kcal Electronic energy + Delta-G solvation = -29551.409308 eV Core-core repulsion = 24625.447182 eV Total energy + Delta-G solvation = -4925.962126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.72914 -48.25633 -48.21524 -47.74292 -41.16407 -40.04666 -36.97542 -36.11125 -35.85239 -34.63867 -33.94285 -32.41686 -30.25379 -28.29128 -26.46093 -26.25485 -24.64356 -23.52221 -22.43063 -21.98410 -20.35367 -20.03240 -19.89288 -19.31385 -19.11238 -18.98326 -18.91892 -18.24654 -17.04285 -16.56393 -16.38119 -15.74974 -15.67181 -15.49100 -15.45957 -15.20445 -15.11724 -14.79818 -14.70167 -14.48138 -14.43002 -14.37478 -14.03668 -13.89187 -13.78212 -13.35399 -13.19128 -12.98550 -12.95891 -12.83905 -12.50811 -12.21498 -11.92040 -11.47782 -11.43763 -10.86449 -10.46546 -10.37974 -9.88017 -9.68571 -8.85400 -6.56114 -1.13306 -0.05624 0.80318 1.55382 1.62852 1.63939 1.84987 2.00216 2.01694 2.24521 2.31405 2.33946 2.51935 2.66979 2.89998 3.24446 3.36145 3.49007 3.55505 3.64267 3.73896 3.84506 4.06611 4.16041 4.40492 4.56803 4.61218 4.69890 4.79986 4.96962 5.22323 5.34087 5.34587 5.37371 5.41326 5.98286 6.11201 6.32626 7.06813 7.18958 7.32371 7.57273 8.48529 Molecular weight = 344.09amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.002438 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.677980 B =11482.789556 C =12054.596262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.010 3.990 3 Si 1.101 2.899 4 H -0.286 1.286 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.654 4.654 8 H 0.084 0.916 9 C 0.262 3.738 10 H 0.045 0.955 11 N -0.715 5.715 12 C 0.697 3.303 13 O -0.624 6.624 14 N -0.726 5.726 15 C 0.178 3.822 16 C -0.052 4.052 17 C -0.057 4.057 18 C -0.069 4.069 19 C 0.015 3.985 20 N -0.361 5.361 21 O 0.374 5.626 22 N -0.358 5.358 23 C 0.004 3.996 24 C -0.051 4.051 25 C 0.414 3.586 26 F -0.190 7.190 27 F -0.204 7.204 28 F -0.189 7.189 29 H 0.263 0.737 30 H 0.412 0.588 31 H 0.411 0.589 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.832 -17.349 0.567 20.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.198 4.198 3 Si 0.922 3.078 4 H -0.211 1.211 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.689 4.689 8 H 0.102 0.898 9 C 0.153 3.847 10 H 0.063 0.937 11 N -0.369 5.369 12 C 0.397 3.603 13 O -0.505 6.505 14 N -0.384 5.384 15 C 0.055 3.945 16 C -0.057 4.057 17 C -0.080 4.080 18 C -0.090 4.090 19 C -0.138 4.138 20 N -0.084 5.084 21 O 0.137 5.863 22 N -0.080 5.080 23 C -0.148 4.148 24 C -0.072 4.072 25 C 0.358 3.642 26 F -0.171 7.171 27 F -0.186 7.186 28 F -0.171 7.171 29 H 0.073 0.927 30 H 0.248 0.752 31 H 0.247 0.753 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.191 0.809 35 H 0.191 0.809 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.159 -16.541 0.060 19.411 hybrid contribution 0.122 -1.125 0.512 1.242 sum 10.280 -17.666 0.571 20.447 Atomic orbital electron populations 1.70869 1.08700 1.30897 1.39841 1.27212 0.95646 1.06204 0.90781 0.83178 0.74743 0.71426 0.78480 1.21127 1.19619 1.18357 1.21846 1.06472 0.93700 1.46912 0.89758 1.19116 0.94237 0.86714 0.84676 0.93691 1.44838 1.12473 1.03738 1.75849 1.16189 0.85110 0.81180 0.77830 1.90913 1.15688 1.85454 1.58419 1.44858 1.11562 1.04329 1.77646 1.20143 0.92827 0.77550 1.03975 1.19577 0.96779 0.96929 0.92420 1.21223 0.92640 0.93372 1.00715 1.20273 0.98478 0.98214 0.91989 1.23364 0.94637 0.96447 0.99312 1.75206 1.21027 1.20334 0.91829 1.85370 1.39062 1.43997 1.17901 1.75212 1.03446 1.06231 1.23061 1.23090 1.01614 1.02152 0.87919 1.20025 0.94339 0.94617 0.98192 1.23049 0.72779 0.72613 0.95785 1.93126 1.76483 1.51971 1.95570 1.93097 1.82571 1.54128 1.88754 1.93020 1.41720 1.95590 1.86771 0.92689 0.75191 0.75273 0.89326 0.90394 0.80850 0.80893 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.93 12.35 21.45 0.26 -48.67 16 2 C 0.01 0.51 4.23 84.65 0.36 0.87 16 3 Si 1.10 45.10 29.99 68.60 2.06 47.16 16 4 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.65 -32.10 8.32 25.60 0.21 -31.89 16 8 H 0.08 3.88 7.86 -2.91 -0.02 3.86 16 9 C 0.26 12.35 2.00 44.25 0.09 12.44 16 10 H 0.05 2.46 6.46 -2.39 -0.02 2.44 16 11 N -0.72 -26.50 4.94 -461.41 -2.28 -28.78 16 12 C 0.70 24.32 8.17 179.06 1.46 25.79 16 13 O -0.62 -27.36 14.91 -3.99 -0.06 -27.42 16 14 N -0.73 -16.17 5.55 -482.31 -2.68 -18.85 16 15 C 0.18 3.13 5.74 85.64 0.49 3.62 16 16 C -0.05 -0.67 5.22 -20.03 -0.10 -0.78 16 17 C -0.06 -0.55 9.51 22.10 0.21 -0.34 16 18 C -0.07 -0.77 10.08 22.30 0.22 -0.54 16 19 C 0.01 0.26 7.76 42.62 0.33 0.59 16 20 N -0.36 -7.09 12.29 -57.46 -0.71 -7.79 16 21 O 0.37 7.43 11.67 139.36 1.63 9.06 16 22 N -0.36 -7.53 12.29 -57.47 -0.71 -8.23 16 23 C 0.00 0.08 7.76 42.62 0.33 0.41 16 24 C -0.05 -0.77 9.65 22.30 0.22 -0.55 16 25 C 0.41 19.85 2.82 71.98 0.20 20.06 16 26 F -0.19 -9.97 14.71 44.97 0.66 -9.31 16 27 F -0.20 -9.68 15.77 44.97 0.71 -8.97 16 28 F -0.19 -8.43 16.97 44.97 0.76 -7.67 16 29 H 0.26 15.22 7.25 -92.71 -0.67 14.55 16 30 H 0.41 12.65 8.54 -92.71 -0.79 11.86 16 31 H 0.41 6.83 8.48 -92.71 -0.79 6.04 16 32 H 0.09 1.56 8.07 -2.39 -0.02 1.54 16 33 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 34 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 35 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -67.47 332.90 3.40 -64.07 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -0.28 Total: 15.74 kcal Atomic # 6 Polarization: 25.63 SS G_CDS: 4.02 Total: 29.66 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -6.11 Total: -112.32 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 1.57 Total: -18.36 kcal Atomic # 9 Polarization: -28.08 SS G_CDS: 2.13 Total: -25.94 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.06 Total: 47.16 kcal Total: -67.47 3.40 -64.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365533201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.260 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds