Wall clock time and date at job start Wed Apr 1 2020 02:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46882 * 2 1 4 4 N 1.46498 * 109.46834 * 240.00206 * 2 1 3 5 5 C 1.36940 * 120.00361 * 85.00244 * 4 2 1 6 6 H 1.07996 * 119.99796 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00278 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99692 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00008 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47099 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46904 * 119.99655 * 9 7 5 12 12 H 1.48494 * 109.47205 * 239.99743 * 9 7 5 13 13 C 1.52991 * 109.47092 * 120.00306 * 2 1 3 14 14 H 1.09000 * 109.51292 * 175.10160 * 13 2 1 15 15 C 1.53305 * 109.51300 * 295.25153 * 13 2 1 16 16 N 1.47224 * 108.40474 * 172.23312 * 15 13 2 17 17 C 1.34772 * 121.03020 * 129.46405 * 16 15 13 18 18 O 1.21635 * 120.00245 * 353.58854 * 17 16 15 19 19 C 1.47183 * 120.00038 * 173.58530 * 17 16 15 20 20 C 1.35974 * 123.45550 * 330.52381 * 19 17 16 21 21 S 1.70444 * 110.84828 * 179.97438 * 20 19 17 22 22 C 1.75505 * 92.45221 * 0.02562 * 21 20 19 23 23 Cl 1.73604 * 124.71888 * 179.97438 * 22 21 20 24 24 C 1.32891 * 110.56305 * 359.75134 * 22 21 20 25 25 C 1.47153 * 117.98646 * 309.48333 * 16 15 13 26 26 C 1.53296 * 108.41565 * 50.52094 * 25 16 15 27 27 O 1.42955 * 109.22338 * 307.68136 * 26 25 16 28 28 H 1.08999 * 109.46882 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47163 * 300.00146 * 1 2 3 30 30 H 1.09005 * 109.46998 * 59.99950 * 1 2 3 31 31 H 0.97007 * 119.99871 * 264.99846 * 4 2 1 32 32 H 0.96999 * 119.99824 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.67926 * 291.95141 * 15 13 2 34 34 H 1.09001 * 109.67442 * 52.46734 * 15 13 2 35 35 H 1.08002 * 124.58044 * 0.02562 * 20 19 17 36 36 H 1.07999 * 123.47642 * 180.21486 * 24 22 21 37 37 H 1.09002 * 109.68222 * 290.77851 * 25 16 15 38 38 H 1.09003 * 109.68293 * 170.26610 * 25 16 15 39 39 H 1.09007 * 109.51154 * 67.60497 * 26 25 16 40 40 H 1.09001 * 109.51575 * 187.70248 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8920 1.0403 -2.4244 7 6 2.6123 -0.6617 -3.5091 8 7 2.9262 -1.9385 -3.4497 9 14 2.7900 0.2701 -5.1183 10 1 2.3752 1.6823 -4.9211 11 1 4.2070 0.2281 -5.5606 12 1 1.9299 -0.3593 -6.1523 13 6 2.0400 -0.7213 1.2491 14 1 3.1265 -0.7983 1.2070 15 6 1.6295 0.0664 2.4987 16 7 1.9649 -0.7373 3.6857 17 6 2.6677 -0.2085 4.7069 18 8 3.1352 0.9101 4.6085 19 6 2.8695 -0.9845 5.9411 20 6 1.9862 -1.9129 6.3958 21 16 2.5380 -2.6155 7.8473 22 6 3.9970 -1.6401 7.8530 23 17 5.2302 -1.7128 9.0727 24 6 4.0287 -0.8415 6.7913 25 6 1.5098 -2.1362 3.7236 26 6 1.9261 -2.8165 2.4145 27 8 1.4705 -2.0311 1.3103 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.2490 -1.6318 -1.1527 32 1 3.2502 -2.3956 -4.2416 33 1 2.1709 1.0118 2.5309 34 1 0.5568 0.2581 2.4756 35 1 1.0604 -2.1710 5.9032 36 1 4.8363 -0.1542 6.5867 37 1 0.4249 -2.1667 3.8244 38 1 1.9713 -2.6497 4.5671 39 1 3.0123 -2.9011 2.3775 40 1 1.4816 -3.8105 2.3632 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642169.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:00 Heat of formation + Delta-G solvation = -19.817351 kcal Electronic energy + Delta-G solvation = -25461.198761 eV Core-core repulsion = 21622.883858 eV Total energy + Delta-G solvation = -3838.314903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.72340 -38.75209 -37.63723 -36.73344 -35.57415 -34.63546 -32.55332 -30.78780 -29.82345 -28.58096 -27.37014 -25.32698 -24.68696 -23.48886 -22.59576 -20.93511 -19.74628 -19.60511 -18.15915 -17.46970 -17.12453 -16.40822 -15.92929 -15.64436 -15.40418 -15.10562 -14.60113 -14.36093 -14.16821 -14.11814 -13.87353 -13.37863 -13.31435 -13.04241 -12.90747 -12.54473 -12.33816 -12.08993 -12.00870 -11.75677 -11.35389 -11.23780 -11.15378 -10.86339 -10.73945 -10.57056 -10.31704 -10.12156 -9.88615 -9.85350 -9.65950 -9.31752 -8.98924 -8.89996 -8.54595 -6.93248 -5.73455 -3.02180 0.16462 0.54399 1.22484 1.47420 1.67985 2.65544 2.95280 3.45075 3.50810 3.52944 3.92972 4.26721 4.31189 4.57485 4.69622 4.77124 4.82026 5.00764 5.08066 5.18178 5.25271 5.31282 5.38239 5.59007 5.60598 5.63792 5.66778 5.78074 5.95098 5.97077 6.17214 6.30947 6.45048 6.63682 6.81196 7.12142 7.16056 7.44095 7.72705 7.91443 8.44749 9.56755 10.14089 10.50622 11.49072 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.023675 B = 0.002236 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.389945 B =12521.745236 C =12713.527341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.076 3.924 14 H 0.065 0.935 15 C 0.083 3.917 16 N -0.605 5.605 17 C 0.579 3.421 18 O -0.529 6.529 19 C -0.138 4.138 20 C -0.216 4.216 21 S 0.236 5.764 22 C -0.171 4.171 23 Cl -0.009 7.009 24 C -0.069 4.069 25 C 0.056 3.944 26 C 0.046 3.954 27 O -0.357 6.357 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.389 0.611 32 H 0.254 0.746 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.187 0.813 36 H 0.163 0.837 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 -4.003 27.360 27.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.078 0.922 4 N -0.361 5.361 5 C -0.369 4.369 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.017 3.983 14 H 0.083 0.917 15 C -0.039 4.039 16 N -0.338 5.338 17 C 0.365 3.635 18 O -0.407 6.407 19 C -0.156 4.156 20 C -0.354 4.354 21 S 0.500 5.500 22 C -0.314 4.314 23 Cl 0.020 6.980 24 C -0.100 4.100 25 C -0.067 4.067 26 C -0.032 4.032 27 O -0.275 6.275 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.223 0.777 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.204 0.796 36 H 0.180 0.820 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.566 -4.445 28.104 28.569 hybrid contribution 0.957 1.211 -1.599 2.222 sum -1.609 -3.234 26.506 26.751 Atomic orbital electron populations 1.22422 0.98660 1.01613 0.99559 1.20195 0.92818 0.94639 0.84935 0.92241 1.42360 1.77852 1.10963 1.04884 1.19293 1.36422 0.93890 0.87313 0.91102 1.24741 1.02218 0.95978 0.98040 1.69688 1.50839 1.08671 1.28701 0.86133 0.77268 0.78807 0.84087 1.20550 1.21933 1.21917 1.22985 0.97754 0.82960 0.94639 0.91737 1.22572 1.02014 0.95883 0.83418 1.48012 1.54542 1.12616 1.18636 1.17525 0.78014 0.85771 0.82145 1.90823 1.48928 1.19591 1.81316 1.20005 0.96304 1.00756 0.98563 1.26163 1.05602 1.01579 1.02076 1.83222 1.10486 1.37396 1.18853 1.25099 0.99435 1.07891 0.99013 1.98387 1.50356 1.97621 1.51681 1.21148 0.98485 0.98843 0.91521 1.23017 1.00685 0.82096 1.00904 1.22913 0.99667 0.95221 0.85419 1.88104 1.67685 1.25691 1.46030 0.92434 0.94685 0.92861 0.77679 0.93625 0.87967 0.89822 0.79594 0.81999 0.90175 0.88156 0.92738 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.06 37.16 0.34 -2.60 16 2 C 0.18 3.66 2.77 -67.93 -0.19 3.47 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -18.15 5.10 -53.43 -0.27 -18.43 16 5 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 9 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 C 0.08 1.28 2.61 -26.58 -0.07 1.21 16 14 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 15 C 0.08 1.18 5.84 -3.49 -0.02 1.16 16 16 N -0.60 -7.54 3.02 -173.57 -0.52 -8.06 16 17 C 0.58 7.78 7.55 -12.63 -0.10 7.69 16 18 O -0.53 -9.00 16.43 5.25 0.09 -8.92 16 19 C -0.14 -1.43 5.49 -104.63 -0.57 -2.00 16 20 C -0.22 -1.57 8.39 29.92 0.25 -1.32 16 21 S 0.24 1.45 23.02 -107.50 -2.47 -1.02 16 22 C -0.17 -1.43 7.01 28.89 0.20 -1.23 16 23 Cl -0.01 -0.07 29.27 -51.86 -1.52 -1.59 16 24 C -0.07 -0.68 10.17 -38.98 -0.40 -1.08 16 25 C 0.06 0.53 5.06 -3.53 -0.02 0.51 16 26 C 0.05 0.54 6.99 37.31 0.26 0.80 16 27 O -0.36 -5.85 9.24 -35.23 -0.33 -6.18 16 28 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 29 H 0.03 0.52 6.41 -51.93 -0.33 0.18 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.39 10.61 7.58 -40.82 -0.31 10.30 16 32 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.10 1.54 7.07 -51.93 -0.37 1.18 16 34 H 0.08 1.10 6.26 -51.93 -0.33 0.78 16 35 H 0.19 0.98 6.00 -52.49 -0.31 0.66 16 36 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 38 H 0.10 0.72 4.49 -51.93 -0.23 0.49 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 354.67 15.07 5.34 5.34 Total: -1.00 -33.15 354.67 -9.31 -42.46 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.77 Total: 7.13 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -0.56 Total: -0.64 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.07 Total: -54.09 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.24 Total: -15.09 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.47 Total: -1.02 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.52 Total: -1.59 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.15 -9.31 -42.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642169.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.644 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds