Wall clock time and date at job start Wed Apr 1 2020 02:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46882 * 2 1 4 4 N 1.46498 * 109.46834 * 240.00206 * 2 1 3 5 5 C 1.36940 * 120.00361 * 85.00244 * 4 2 1 6 6 H 1.07996 * 119.99796 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00278 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99692 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00008 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47099 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46904 * 119.99655 * 9 7 5 12 12 H 1.48494 * 109.47205 * 239.99743 * 9 7 5 13 13 C 1.52991 * 109.47092 * 120.00306 * 2 1 3 14 14 H 1.09000 * 109.51292 * 175.10160 * 13 2 1 15 15 C 1.53305 * 109.51300 * 295.25153 * 13 2 1 16 16 N 1.47224 * 108.40474 * 172.23312 * 15 13 2 17 17 C 1.34772 * 121.03020 * 129.46405 * 16 15 13 18 18 O 1.21635 * 120.00245 * 353.58854 * 17 16 15 19 19 C 1.47183 * 120.00038 * 173.58530 * 17 16 15 20 20 C 1.35974 * 123.45550 * 330.52381 * 19 17 16 21 21 S 1.70444 * 110.84828 * 179.97438 * 20 19 17 22 22 C 1.75505 * 92.45221 * 0.02562 * 21 20 19 23 23 Cl 1.73604 * 124.71888 * 179.97438 * 22 21 20 24 24 C 1.32891 * 110.56305 * 359.75134 * 22 21 20 25 25 C 1.47153 * 117.98646 * 309.48333 * 16 15 13 26 26 C 1.53296 * 108.41565 * 50.52094 * 25 16 15 27 27 O 1.42955 * 109.22338 * 307.68136 * 26 25 16 28 28 H 1.08999 * 109.46882 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47163 * 300.00146 * 1 2 3 30 30 H 1.09005 * 109.46998 * 59.99950 * 1 2 3 31 31 H 0.97007 * 119.99871 * 264.99846 * 4 2 1 32 32 H 0.96999 * 119.99824 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.67926 * 291.95141 * 15 13 2 34 34 H 1.09001 * 109.67442 * 52.46734 * 15 13 2 35 35 H 1.08002 * 124.58044 * 0.02562 * 20 19 17 36 36 H 1.07999 * 123.47642 * 180.21486 * 24 22 21 37 37 H 1.09002 * 109.68222 * 290.77851 * 25 16 15 38 38 H 1.09003 * 109.68293 * 170.26610 * 25 16 15 39 39 H 1.09007 * 109.51154 * 67.60497 * 26 25 16 40 40 H 1.09001 * 109.51575 * 187.70248 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8920 1.0403 -2.4244 7 6 2.6123 -0.6617 -3.5091 8 7 2.9262 -1.9385 -3.4497 9 14 2.7900 0.2701 -5.1183 10 1 2.3752 1.6823 -4.9211 11 1 4.2070 0.2281 -5.5606 12 1 1.9299 -0.3593 -6.1523 13 6 2.0400 -0.7213 1.2491 14 1 3.1265 -0.7983 1.2070 15 6 1.6295 0.0664 2.4987 16 7 1.9649 -0.7373 3.6857 17 6 2.6677 -0.2085 4.7069 18 8 3.1352 0.9101 4.6085 19 6 2.8695 -0.9845 5.9411 20 6 1.9862 -1.9129 6.3958 21 16 2.5380 -2.6155 7.8473 22 6 3.9970 -1.6401 7.8530 23 17 5.2302 -1.7128 9.0727 24 6 4.0287 -0.8415 6.7913 25 6 1.5098 -2.1362 3.7236 26 6 1.9261 -2.8165 2.4145 27 8 1.4705 -2.0311 1.3103 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.2490 -1.6318 -1.1527 32 1 3.2502 -2.3956 -4.2416 33 1 2.1709 1.0118 2.5309 34 1 0.5568 0.2581 2.4756 35 1 1.0604 -2.1710 5.9032 36 1 4.8363 -0.1542 6.5867 37 1 0.4249 -2.1667 3.8244 38 1 1.9713 -2.6497 4.5671 39 1 3.0123 -2.9011 2.3775 40 1 1.4816 -3.8105 2.3632 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485642169.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:59 Heat of formation + Delta-G solvation = -42.219986 kcal Electronic energy + Delta-G solvation = -25462.170213 eV Core-core repulsion = 21622.883858 eV Total energy + Delta-G solvation = -3839.286354 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.72782 -39.86724 -38.38793 -37.46521 -37.10963 -35.82166 -34.34273 -32.13932 -30.77165 -30.01875 -28.60829 -26.54784 -25.90410 -24.95256 -23.70103 -21.94030 -21.09417 -20.45762 -19.29456 -18.88509 -18.24171 -17.60260 -17.03188 -16.78147 -16.55210 -16.23410 -16.02453 -15.66241 -15.24743 -15.06608 -14.86381 -14.75141 -14.42198 -14.29343 -13.96526 -13.78610 -13.59414 -13.22499 -13.03183 -12.86759 -12.66552 -12.53929 -12.42930 -12.36145 -12.13475 -11.88904 -11.81614 -11.64418 -11.57862 -11.22790 -10.96406 -10.93462 -9.95093 -9.74187 -9.46364 -9.00286 -7.92263 -5.20701 -0.47775 -0.03328 0.59402 0.70557 1.04900 1.47545 1.48269 1.58243 1.71075 2.04025 2.56755 2.77641 3.40552 3.43951 3.59431 3.71875 3.91604 3.94628 4.00546 4.10383 4.11770 4.29367 4.37296 4.44226 4.49806 4.59241 4.62969 4.64600 4.77914 4.81119 4.89409 4.95722 5.10391 5.22219 5.28402 5.52440 5.63913 6.17793 6.23962 6.29992 6.92548 7.35890 8.11565 8.36139 9.31529 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.023675 B = 0.002236 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.389945 B =12521.745236 C =12713.527341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.175 3.825 3 H 0.057 0.943 4 N -0.733 5.733 5 C -0.237 4.237 6 H 0.077 0.923 7 C -0.078 4.078 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.266 1.266 11 H -0.295 1.295 12 H -0.293 1.293 13 C 0.091 3.909 14 H 0.036 0.964 15 C 0.093 3.907 16 N -0.605 5.605 17 C 0.577 3.423 18 O -0.578 6.578 19 C -0.168 4.168 20 C -0.201 4.201 21 S 0.316 5.684 22 C -0.185 4.185 23 Cl -0.008 7.008 24 C -0.087 4.087 25 C 0.060 3.940 26 C 0.036 3.964 27 O -0.379 6.379 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.375 0.625 32 H 0.250 0.750 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.214 0.786 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.041 0.959 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.111 -4.907 29.517 30.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.067 3.933 3 H 0.075 0.925 4 N -0.373 5.373 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.190 1.190 11 H -0.223 1.223 12 H -0.221 1.221 13 C 0.031 3.969 14 H 0.054 0.946 15 C -0.030 4.030 16 N -0.337 5.337 17 C 0.365 3.635 18 O -0.459 6.459 19 C -0.186 4.186 20 C -0.340 4.340 21 S 0.581 5.419 22 C -0.328 4.328 23 Cl 0.020 6.980 24 C -0.118 4.118 25 C -0.062 4.062 26 C -0.041 4.041 27 O -0.298 6.298 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.207 0.793 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.230 0.770 36 H 0.164 0.836 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.060 0.940 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.458 -5.342 30.313 31.102 hybrid contribution 1.517 1.400 -2.105 2.949 sum -2.941 -3.942 28.208 28.634 Atomic orbital electron populations 1.22212 0.96630 1.01313 1.00582 1.20435 0.94074 0.94420 0.84406 0.92507 1.42537 1.78314 1.10464 1.05984 1.19680 1.34690 0.94199 0.88283 0.90529 1.25551 1.03103 0.96917 1.01444 1.69844 1.52684 1.10258 1.29256 0.85093 0.76695 0.78228 0.79888 1.18992 1.22266 1.22069 1.22541 0.95860 0.83928 0.94525 0.94618 1.22306 1.02599 0.95017 0.83036 1.48078 1.54308 1.13674 1.17687 1.18001 0.76972 0.85424 0.83056 1.90788 1.50893 1.21833 1.82420 1.19672 0.97960 1.02824 0.98159 1.26510 1.05458 0.99601 1.02399 1.83053 1.07559 1.34662 1.16578 1.25293 1.00633 1.08272 0.98595 1.98388 1.50633 1.97620 1.51356 1.21066 0.98613 0.99592 0.92487 1.23244 1.02531 0.80118 1.00279 1.23238 0.99312 0.96188 0.85327 1.88053 1.67788 1.25504 1.48456 0.93304 0.90930 0.94476 0.79286 0.94157 0.89434 0.88083 0.76961 0.83566 0.87308 0.85468 0.94044 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.06 71.98 0.65 -4.54 16 2 C 0.18 7.02 2.77 44.99 0.12 7.14 16 3 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 4 N -0.73 -37.91 5.10 -322.95 -1.65 -39.55 16 5 C -0.24 -13.35 9.93 84.03 0.83 -12.52 16 6 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 7 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 8 N -0.97 -60.53 13.06 21.65 0.28 -60.24 16 9 Si 0.97 46.98 29.55 68.60 2.03 49.00 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 13 C 0.09 3.10 2.61 30.69 0.08 3.18 16 14 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 15 C 0.09 2.59 5.84 86.34 0.50 3.09 16 16 N -0.61 -14.28 3.02 -821.29 -2.48 -16.76 16 17 C 0.58 15.30 7.55 86.59 0.65 15.95 16 18 O -0.58 -20.40 16.43 -4.14 -0.07 -20.47 16 19 C -0.17 -3.23 5.49 -19.87 -0.11 -3.34 16 20 C -0.20 -2.18 8.39 67.29 0.56 -1.61 16 21 S 0.32 2.69 23.02 -56.49 -1.30 1.39 16 22 C -0.18 -2.77 7.01 66.64 0.47 -2.30 16 23 Cl -0.01 -0.12 29.27 -2.72 -0.08 -0.20 16 24 C -0.09 -1.68 10.17 22.68 0.23 -1.45 16 25 C 0.06 0.93 5.06 86.35 0.44 1.37 16 26 C 0.04 0.79 6.99 72.08 0.50 1.30 16 27 O -0.38 -12.18 9.24 -148.98 -1.38 -13.56 16 28 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 29 H 0.07 1.98 6.41 -2.39 -0.02 1.97 16 30 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.38 21.18 7.58 -92.70 -0.70 20.48 16 32 H 0.25 15.07 8.31 -92.71 -0.77 14.29 16 33 H 0.09 2.70 7.07 -2.39 -0.02 2.69 16 34 H 0.10 2.44 6.26 -2.39 -0.01 2.42 16 35 H 0.21 1.08 6.00 -2.91 -0.02 1.07 16 36 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.11 1.18 8.06 -2.39 -0.02 1.16 16 38 H 0.13 1.30 4.49 -2.39 -0.01 1.29 16 39 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -75.24 354.67 1.16 -74.08 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.39 Total: 24.13 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 5.41 Total: 2.18 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -3.85 Total: -116.56 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.44 Total: -34.03 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.30 Total: 1.39 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.08 Total: -0.20 kcal Total: -75.24 1.16 -74.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642169.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.862 kcal (2) G-P(sol) polarization free energy of solvation -75.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds