Wall clock time and date at job start Wed Apr 1 2020 02:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47357 * 2 1 4 4 N 1.46507 * 109.46652 * 120.00161 * 2 1 3 5 5 C 1.36934 * 119.99743 * 274.99615 * 4 2 1 6 6 H 1.07994 * 120.00463 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99577 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00193 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99912 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47379 * 59.99518 * 9 7 5 11 11 H 1.48494 * 109.47319 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46663 * 299.99664 * 9 7 5 13 13 C 1.53002 * 109.46905 * 239.99651 * 2 1 3 14 14 H 1.09002 * 109.51192 * 185.10321 * 13 2 1 15 15 C 1.53293 * 109.51111 * 65.00497 * 13 2 1 16 16 N 1.47149 * 108.38536 * 187.77070 * 15 13 2 17 17 C 1.34783 * 120.98226 * 230.55689 * 16 15 13 18 18 O 1.21643 * 119.99977 * 356.49671 * 17 16 15 19 19 C 1.47183 * 119.99959 * 176.49745 * 17 16 15 20 20 C 1.35967 * 123.45390 * 224.83515 * 19 17 16 21 21 S 1.70450 * 110.84489 * 179.97438 * 20 19 17 22 22 C 1.75501 * 92.45426 * 359.97438 * 21 20 19 23 23 Cl 1.73599 * 124.72088 * 179.97438 * 22 21 20 24 24 C 1.32898 * 110.56415 * 359.75166 * 22 21 20 25 25 C 1.47142 * 118.03659 * 50.53590 * 16 15 13 26 26 C 1.53297 * 108.38758 * 309.46501 * 25 16 15 27 27 O 1.42956 * 109.51769 * 305.25691 * 13 2 1 28 28 H 1.08996 * 109.47552 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46890 * 300.00518 * 1 2 3 30 30 H 1.09004 * 109.46356 * 59.99589 * 1 2 3 31 31 H 0.96998 * 119.99996 * 94.99829 * 4 2 1 32 32 H 0.96999 * 120.00056 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.68364 * 307.49818 * 15 13 2 34 34 H 1.09009 * 109.68339 * 68.04835 * 15 13 2 35 35 H 1.07999 * 124.58438 * 359.92903 * 20 19 17 36 36 H 1.07999 * 123.47519 * 180.21185 * 24 22 21 37 37 H 1.08999 * 109.68437 * 69.19065 * 25 16 15 38 38 H 1.09000 * 109.68621 * 189.73968 * 25 16 15 39 39 H 1.08996 * 109.51654 * 172.22503 * 26 25 16 40 40 H 1.09007 * 109.51128 * 292.33308 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8919 1.0402 2.4244 7 6 2.6122 -0.6619 3.5090 8 7 2.9251 -1.9389 3.4499 9 14 2.7899 0.2698 5.1183 10 1 1.4673 0.8057 5.5288 11 1 3.3000 -0.6483 6.1681 12 1 3.7445 1.3928 4.9372 13 6 2.0400 -0.7213 -1.2492 14 1 3.1262 -0.8016 -1.2054 15 6 1.6350 0.0696 -2.4983 16 7 1.9698 -0.7335 -3.6850 17 6 2.6773 -0.2052 -4.7033 18 8 2.9942 0.9690 -4.6790 19 6 3.0664 -1.0489 -5.8448 20 6 4.3101 -1.0397 -6.3941 21 16 4.4071 -2.1378 -7.6942 22 6 2.7334 -2.6295 -7.5023 23 17 1.9298 -3.8090 -8.4905 24 6 2.1680 -1.9769 -6.4920 25 6 1.5098 -2.1306 -3.7269 26 6 1.9209 -2.8144 -2.4179 27 8 1.4659 -2.0290 -1.3135 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 2.2489 -1.6318 1.1527 32 1 3.2483 -2.3962 4.2419 33 1 0.5628 0.2648 -2.4777 34 1 2.1799 1.0133 -2.5280 35 1 5.1262 -0.4199 -6.0533 36 1 1.1417 -2.1223 -6.1888 37 1 0.4251 -2.1570 -3.8300 38 1 1.9717 -2.6441 -4.5701 39 1 1.4719 -3.8064 -2.3688 40 1 3.0066 -2.9038 -2.3792 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:04 Heat of formation + Delta-G solvation = -24.859888 kcal Electronic energy + Delta-G solvation = -25553.350584 eV Core-core repulsion = 21714.817020 eV Total energy + Delta-G solvation = -3838.533564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.68192 -38.74173 -37.70412 -36.73367 -35.51955 -34.56913 -32.50072 -30.38324 -30.11621 -28.50431 -27.58253 -25.56895 -24.26597 -23.52761 -22.57784 -20.98916 -19.63517 -19.40086 -18.59021 -17.26199 -16.74236 -16.73083 -16.01336 -15.60493 -15.46062 -14.91714 -14.57266 -14.45808 -14.14545 -14.09971 -13.83771 -13.45576 -13.33643 -13.00245 -12.86236 -12.51567 -12.25953 -12.07686 -11.96039 -11.88706 -11.33936 -11.22342 -11.13640 -10.83517 -10.72753 -10.56664 -10.33811 -10.17323 -9.89458 -9.85701 -9.64630 -9.34483 -8.95444 -8.88561 -8.52966 -6.92981 -5.72764 -3.01598 0.25286 0.54910 1.23082 1.47662 1.67655 2.63673 2.88395 3.46192 3.50550 3.51458 3.95887 4.26846 4.39583 4.58181 4.72564 4.78939 4.91846 5.04125 5.08472 5.15168 5.28690 5.34387 5.45861 5.53476 5.59968 5.65191 5.70234 5.79145 5.96786 5.98352 6.18672 6.32009 6.46090 6.65261 6.82461 7.13751 7.17688 7.45845 7.72014 7.91137 8.45419 9.57231 10.14653 10.51308 11.49605 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.022635 B = 0.002332 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.739808 B =12004.611795 C =12196.119997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C 0.076 3.924 14 H 0.064 0.936 15 C 0.083 3.917 16 N -0.603 5.603 17 C 0.581 3.419 18 O -0.531 6.531 19 C -0.144 4.144 20 C -0.186 4.186 21 S 0.239 5.761 22 C -0.169 4.169 23 Cl -0.009 7.009 24 C -0.096 4.096 25 C 0.063 3.937 26 C 0.046 3.954 27 O -0.357 6.357 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.389 0.611 32 H 0.255 0.745 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.182 0.818 36 H 0.162 0.838 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -4.168 -26.811 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.017 3.983 14 H 0.082 0.918 15 C -0.039 4.039 16 N -0.336 5.336 17 C 0.367 3.633 18 O -0.409 6.409 19 C -0.161 4.161 20 C -0.324 4.324 21 S 0.503 5.497 22 C -0.312 4.312 23 Cl 0.020 6.980 24 C -0.127 4.127 25 C -0.061 4.061 26 C -0.032 4.032 27 O -0.275 6.275 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.223 0.777 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.199 0.801 36 H 0.179 0.821 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.746 -4.021 -27.587 27.889 hybrid contribution -0.929 0.462 1.637 1.938 sum -0.183 -3.559 -25.950 26.194 Atomic orbital electron populations 1.22417 0.98632 1.01638 0.99564 1.20196 0.92847 0.94603 0.84921 0.92270 1.42345 1.77886 1.10953 1.04865 1.19201 1.36646 0.93851 0.87373 0.91216 1.24736 1.02188 0.95965 0.98011 1.69667 1.50740 1.08632 1.28903 0.86280 0.77767 0.78583 0.83621 1.21285 1.21749 1.21307 1.22985 0.97639 0.83072 0.94640 0.91824 1.22561 1.02221 0.95766 0.83396 1.48049 1.53852 1.12973 1.18706 1.17546 0.77739 0.86550 0.81450 1.90831 1.55210 1.15859 1.78954 1.19947 0.94024 1.01520 1.00620 1.25632 1.01474 1.04286 1.01036 1.83250 1.04609 1.33077 1.28749 1.25138 0.99626 1.04136 1.02340 1.98390 1.77754 1.54277 1.67589 1.21348 1.01488 0.95211 0.94686 1.22838 1.00781 0.81853 1.00579 1.22906 0.99592 0.95227 0.85460 1.88108 1.67458 1.25836 1.46090 0.92421 0.92870 0.94667 0.77674 0.93520 0.89827 0.88073 0.80102 0.82073 0.90144 0.88426 0.87771 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.06 37.16 0.34 -2.63 16 2 C 0.19 3.68 2.77 -67.92 -0.19 3.49 16 3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 4 N -0.72 -18.18 5.10 -53.42 -0.27 -18.45 16 5 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 9 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.08 1.29 2.61 -26.58 -0.07 1.22 16 14 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.08 1.19 5.81 -3.54 -0.02 1.17 16 16 N -0.60 -7.70 3.02 -173.64 -0.52 -8.22 16 17 C 0.58 7.84 7.45 -12.63 -0.09 7.75 16 18 O -0.53 -8.98 16.53 5.24 0.09 -8.89 16 19 C -0.14 -1.50 5.18 -104.63 -0.54 -2.04 16 20 C -0.19 -1.63 10.76 29.92 0.32 -1.31 16 21 S 0.24 1.60 23.02 -107.50 -2.47 -0.88 16 22 C -0.17 -1.30 7.01 28.89 0.20 -1.10 16 23 Cl -0.01 -0.06 29.27 -51.86 -1.52 -1.58 16 24 C -0.10 -0.80 7.82 -38.97 -0.30 -1.11 16 25 C 0.06 0.63 5.59 -3.54 -0.02 0.61 16 26 C 0.05 0.56 6.99 37.31 0.26 0.82 16 27 O -0.36 -5.93 9.24 -35.23 -0.33 -6.26 16 28 H 0.06 1.11 7.55 -51.93 -0.39 0.71 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.03 0.53 6.42 -51.93 -0.33 0.20 16 31 H 0.39 10.62 7.59 -40.82 -0.31 10.31 16 32 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.08 1.14 6.27 -51.93 -0.33 0.81 16 34 H 0.10 1.53 7.10 -51.92 -0.37 1.16 16 35 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.16 1.14 7.01 -52.49 -0.37 0.78 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.80 4.47 -51.93 -0.23 0.57 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 356.01 15.07 5.37 5.37 Total: -1.00 -32.86 356.01 -9.16 -42.02 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.83 Total: 7.42 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.36 Total: -0.41 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.07 Total: -54.27 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.24 Total: -15.15 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.47 Total: -0.88 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.52 Total: -1.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.86 -9.16 -42.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.156 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds