Wall clock time and date at job start Wed Apr 1 2020 02:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47357 * 2 1 4 4 N 1.46507 * 109.46652 * 120.00161 * 2 1 3 5 5 C 1.36934 * 119.99743 * 274.99615 * 4 2 1 6 6 H 1.07994 * 120.00463 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99577 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00193 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99912 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47379 * 59.99518 * 9 7 5 11 11 H 1.48494 * 109.47319 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46663 * 299.99664 * 9 7 5 13 13 C 1.53002 * 109.46905 * 239.99651 * 2 1 3 14 14 H 1.09002 * 109.51192 * 185.10321 * 13 2 1 15 15 C 1.53293 * 109.51111 * 65.00497 * 13 2 1 16 16 N 1.47149 * 108.38536 * 187.77070 * 15 13 2 17 17 C 1.34783 * 120.98226 * 230.55689 * 16 15 13 18 18 O 1.21643 * 119.99977 * 356.49671 * 17 16 15 19 19 C 1.47183 * 119.99959 * 176.49745 * 17 16 15 20 20 C 1.35967 * 123.45390 * 224.83515 * 19 17 16 21 21 S 1.70450 * 110.84489 * 179.97438 * 20 19 17 22 22 C 1.75501 * 92.45426 * 359.97438 * 21 20 19 23 23 Cl 1.73599 * 124.72088 * 179.97438 * 22 21 20 24 24 C 1.32898 * 110.56415 * 359.75166 * 22 21 20 25 25 C 1.47142 * 118.03659 * 50.53590 * 16 15 13 26 26 C 1.53297 * 108.38758 * 309.46501 * 25 16 15 27 27 O 1.42956 * 109.51769 * 305.25691 * 13 2 1 28 28 H 1.08996 * 109.47552 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46890 * 300.00518 * 1 2 3 30 30 H 1.09004 * 109.46356 * 59.99589 * 1 2 3 31 31 H 0.96998 * 119.99996 * 94.99829 * 4 2 1 32 32 H 0.96999 * 120.00056 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.68364 * 307.49818 * 15 13 2 34 34 H 1.09009 * 109.68339 * 68.04835 * 15 13 2 35 35 H 1.07999 * 124.58438 * 359.92903 * 20 19 17 36 36 H 1.07999 * 123.47519 * 180.21185 * 24 22 21 37 37 H 1.08999 * 109.68437 * 69.19065 * 25 16 15 38 38 H 1.09000 * 109.68621 * 189.73968 * 25 16 15 39 39 H 1.08996 * 109.51654 * 172.22503 * 26 25 16 40 40 H 1.09007 * 109.51128 * 292.33308 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8919 1.0402 2.4244 7 6 2.6122 -0.6619 3.5090 8 7 2.9251 -1.9389 3.4499 9 14 2.7899 0.2698 5.1183 10 1 1.4673 0.8057 5.5288 11 1 3.3000 -0.6483 6.1681 12 1 3.7445 1.3928 4.9372 13 6 2.0400 -0.7213 -1.2492 14 1 3.1262 -0.8016 -1.2054 15 6 1.6350 0.0696 -2.4983 16 7 1.9698 -0.7335 -3.6850 17 6 2.6773 -0.2052 -4.7033 18 8 2.9942 0.9690 -4.6790 19 6 3.0664 -1.0489 -5.8448 20 6 4.3101 -1.0397 -6.3941 21 16 4.4071 -2.1378 -7.6942 22 6 2.7334 -2.6295 -7.5023 23 17 1.9298 -3.8090 -8.4905 24 6 2.1680 -1.9769 -6.4920 25 6 1.5098 -2.1306 -3.7269 26 6 1.9209 -2.8144 -2.4179 27 8 1.4659 -2.0290 -1.3135 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 2.2489 -1.6318 1.1527 32 1 3.2483 -2.3962 4.2419 33 1 0.5628 0.2648 -2.4777 34 1 2.1799 1.0133 -2.5280 35 1 5.1262 -0.4199 -6.0533 36 1 1.1417 -2.1223 -6.1888 37 1 0.4251 -2.1570 -3.8300 38 1 1.9717 -2.6441 -4.5701 39 1 1.4719 -3.8064 -2.3688 40 1 3.0066 -2.9038 -2.3792 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485642173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:03 Heat of formation + Delta-G solvation = -46.595265 kcal Electronic energy + Delta-G solvation = -25554.293101 eV Core-core repulsion = 21714.817020 eV Total energy + Delta-G solvation = -3839.476080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71230 -39.87826 -38.42969 -37.41871 -37.10177 -35.76510 -34.32405 -31.94058 -30.80504 -29.96460 -28.82126 -26.79776 -25.78249 -24.71780 -23.77864 -21.96440 -21.05493 -20.23290 -19.41050 -19.19771 -17.84415 -17.64842 -17.13351 -16.89226 -16.56344 -16.20226 -15.88888 -15.75762 -15.25972 -15.07876 -14.82942 -14.67375 -14.41243 -14.34914 -14.00634 -13.76418 -13.60652 -13.18099 -13.00557 -12.80011 -12.67224 -12.56738 -12.43900 -12.38530 -12.21792 -11.87777 -11.76746 -11.63965 -11.60361 -11.24800 -11.01044 -10.91690 -9.96668 -9.73166 -9.47706 -9.00018 -7.91287 -5.19949 -0.40895 -0.02973 0.58579 0.74472 1.07985 1.47832 1.50988 1.56767 1.65895 1.94750 2.57534 2.77548 3.39685 3.43107 3.58004 3.75342 3.90434 3.94224 4.00364 4.09498 4.18695 4.30171 4.37676 4.41673 4.50283 4.59552 4.62933 4.67993 4.79802 4.81395 4.88355 4.95704 5.10167 5.20931 5.27519 5.52387 5.63245 6.16011 6.23787 6.30365 6.89217 7.36508 8.12112 8.36966 9.32049 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.022635 B = 0.002332 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.739808 B =12004.611795 C =12196.119997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.176 3.824 3 H 0.059 0.941 4 N -0.732 5.732 5 C -0.240 4.240 6 H 0.077 0.923 7 C -0.077 4.077 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.279 1.279 13 C 0.091 3.909 14 H 0.040 0.960 15 C 0.093 3.907 16 N -0.603 5.603 17 C 0.580 3.420 18 O -0.575 6.575 19 C -0.166 4.166 20 C -0.194 4.194 21 S 0.298 5.702 22 C -0.177 4.177 23 Cl -0.001 7.001 24 C -0.097 4.097 25 C 0.068 3.932 26 C 0.039 3.961 27 O -0.380 6.380 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.375 0.625 32 H 0.250 0.750 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.183 0.817 36 H 0.175 0.825 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 -4.495 -28.840 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.067 3.933 3 H 0.077 0.923 4 N -0.373 5.373 5 C -0.372 4.372 6 H 0.095 0.905 7 C -0.269 4.269 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.205 1.205 13 C 0.031 3.969 14 H 0.058 0.942 15 C -0.030 4.030 16 N -0.335 5.335 17 C 0.368 3.632 18 O -0.455 6.455 19 C -0.183 4.183 20 C -0.333 4.333 21 S 0.563 5.437 22 C -0.320 4.320 23 Cl 0.028 6.972 24 C -0.128 4.128 25 C -0.054 4.054 26 C -0.038 4.038 27 O -0.299 6.299 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.207 0.793 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.200 0.800 36 H 0.192 0.808 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.097 -4.344 -29.667 29.983 hybrid contribution -0.695 0.514 2.106 2.276 sum -0.598 -3.830 -27.561 27.832 Atomic orbital electron populations 1.22215 0.96833 1.01225 1.00527 1.20427 0.93939 0.94484 0.84411 0.92336 1.42519 1.78333 1.10457 1.05960 1.19607 1.34986 0.94219 0.88339 0.90549 1.25552 1.03025 0.96893 1.01431 1.69831 1.52563 1.10221 1.29391 0.85230 0.77956 0.77280 0.79407 1.20399 1.22274 1.20472 1.22563 0.96003 0.83871 0.94425 0.94215 1.22301 1.02653 0.95023 0.83050 1.48115 1.53662 1.13850 1.17912 1.18000 0.76798 0.86346 0.82067 1.90799 1.56821 1.17830 1.80070 1.19760 0.95230 1.02734 1.00606 1.25865 1.01187 1.04591 1.01640 1.83108 1.03326 1.30904 1.26346 1.25270 1.00363 1.04127 1.02259 1.98399 1.77715 1.53872 1.67243 1.21336 1.01811 0.94802 0.94827 1.22987 1.02104 0.80208 1.00077 1.23197 0.99458 0.95993 0.85189 1.88059 1.67653 1.25771 1.48378 0.93445 0.94448 0.91065 0.79278 0.94136 0.88508 0.89177 0.79962 0.80816 0.88146 0.86080 0.85242 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.06 71.98 0.65 -4.66 16 2 C 0.18 7.06 2.77 44.99 0.12 7.19 16 3 H 0.06 2.34 8.08 -2.39 -0.02 2.32 16 4 N -0.73 -37.88 5.10 -322.92 -1.65 -39.53 16 5 C -0.24 -13.50 9.93 84.03 0.83 -12.67 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 7 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 8 N -0.97 -60.38 13.06 21.65 0.28 -60.10 16 9 Si 0.97 46.80 29.55 68.60 2.03 48.82 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 C 0.09 3.10 2.61 30.69 0.08 3.18 16 14 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 15 C 0.09 2.62 5.81 86.35 0.50 3.12 16 16 N -0.60 -14.79 3.02 -821.50 -2.48 -17.27 16 17 C 0.58 15.34 7.45 86.59 0.65 15.98 16 18 O -0.57 -19.65 16.53 -4.17 -0.07 -19.72 16 19 C -0.17 -3.21 5.18 -19.87 -0.10 -3.32 16 20 C -0.19 -3.13 10.76 67.29 0.72 -2.41 16 21 S 0.30 3.24 23.02 -56.49 -1.30 1.94 16 22 C -0.18 -2.25 7.01 66.64 0.47 -1.78 16 23 Cl 0.00 -0.01 29.27 -2.72 -0.08 -0.09 16 24 C -0.10 -1.39 7.82 22.68 0.18 -1.21 16 25 C 0.07 1.23 5.59 86.36 0.48 1.71 16 26 C 0.04 0.89 6.99 72.08 0.50 1.40 16 27 O -0.38 -12.50 9.24 -148.98 -1.38 -13.88 16 28 H 0.05 1.79 7.55 -2.39 -0.02 1.77 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 2.01 6.42 -2.38 -0.02 2.00 16 31 H 0.38 21.18 7.59 -92.71 -0.70 20.48 16 32 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.10 2.46 6.27 -2.39 -0.01 2.45 16 34 H 0.09 2.76 7.10 -2.38 -0.02 2.74 16 35 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.17 1.94 7.01 -2.91 -0.02 1.92 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.12 1.66 4.47 -2.39 -0.01 1.65 16 39 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -72.36 356.01 1.30 -71.06 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.39 Total: 26.24 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 5.56 Total: 2.52 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -3.85 Total: -116.90 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.45 Total: -33.60 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.30 Total: 1.94 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -0.08 Total: -0.09 kcal Total: -72.36 1.30 -71.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.465 kcal (2) G-P(sol) polarization free energy of solvation -72.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds