Wall clock time and date at job start Wed Apr 1 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00483 * 2 1 4 4 C 1.53001 * 109.46926 * 270.00247 * 3 2 1 5 5 N 1.46504 * 109.46868 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00103 * 89.99921 * 5 4 3 7 7 C 1.34779 * 119.99540 * 270.00016 * 5 4 3 8 8 O 1.21600 * 120.00277 * 5.40409 * 7 5 4 9 9 C 1.47447 * 119.99387 * 185.40263 * 7 5 4 10 10 C 1.37987 * 124.15316 * 186.17036 * 9 7 5 11 11 S 1.72106 * 104.03317 * 179.97438 * 10 9 7 12 12 N 1.56410 * 96.15300 * 359.97438 * 11 10 9 13 13 N 1.27418 * 109.87665 * 359.75227 * 12 11 10 14 14 C 1.34782 * 119.99955 * 180.02562 * 2 1 3 15 15 O 1.21278 * 119.99908 * 180.02562 * 14 2 1 16 16 C 1.50704 * 119.99929 * 359.97438 * 14 2 1 17 17 S 1.80998 * 109.46879 * 179.97438 * 16 14 2 18 18 C 1.76208 * 99.99615 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00070 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99734 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99773 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46973 * 89.99990 * 22 20 18 24 24 H 1.48501 * 109.47159 * 210.00175 * 22 20 18 25 25 H 1.48498 * 109.47053 * 330.00361 * 22 20 18 26 26 H 1.08992 * 109.47246 * 90.00216 * 1 2 3 27 27 H 1.09000 * 109.47442 * 210.00215 * 1 2 3 28 28 H 1.09000 * 109.46938 * 329.99417 * 1 2 3 29 29 H 1.08995 * 109.47250 * 149.99689 * 3 2 1 30 30 H 1.09005 * 109.46449 * 30.00130 * 3 2 1 31 31 H 1.09002 * 109.46774 * 59.99704 * 4 3 2 32 32 H 1.08994 * 109.46941 * 299.99806 * 4 3 2 33 33 H 1.09004 * 109.46896 * 95.33888 * 6 5 4 34 34 H 1.08998 * 109.47061 * 215.33845 * 6 5 4 35 35 H 1.09002 * 109.47097 * 335.34222 * 6 5 4 36 36 H 1.07993 * 127.98198 * 359.95689 * 10 9 7 37 37 H 1.09002 * 109.47271 * 300.00584 * 16 14 2 38 38 H 1.08999 * 109.46607 * 60.00404 * 16 14 2 39 39 H 0.97006 * 119.99583 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 7 3.1846 2.9793 -1.4425 6 6 4.6496 2.9799 -1.4424 7 6 2.5102 4.1463 -1.4426 8 8 1.2983 4.1482 -1.3436 9 6 3.2422 5.4206 -1.5628 10 6 2.6555 6.6645 -1.4505 11 16 3.9614 7.7634 -1.6725 12 7 5.0651 6.6736 -1.8741 13 7 4.5484 5.5122 -1.7860 14 6 2.1389 -1.1673 -0.0005 15 8 3.3516 -1.1672 -0.0001 16 6 1.3853 -2.4724 -0.0005 17 16 2.5615 -3.8481 -0.0020 18 6 1.4413 -5.2083 -0.0026 19 1 0.3761 -5.0305 -0.0024 20 6 1.9281 -6.5081 -0.0032 21 7 3.2264 -6.7247 -0.0029 22 14 0.7406 -7.9501 -0.0045 23 1 0.4264 -8.3313 -1.4048 24 1 1.3616 -9.1034 0.6951 25 1 -0.5103 -7.5618 0.6953 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 3.1499 1.1383 0.5139 30 1 1.6084 2.0283 0.5139 31 1 1.5001 1.8407 -1.9563 32 1 3.0415 0.9507 -1.9563 33 1 5.0130 3.0756 -2.4656 34 1 5.0125 3.8183 -0.8480 35 1 5.0132 2.0460 -1.0135 36 1 1.6168 6.8952 -1.2661 37 1 0.7589 -2.5303 0.8896 38 1 0.7584 -2.5298 -0.8903 39 1 3.5666 -7.6331 -0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501032031.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:32 Heat of formation + Delta-G solvation = 24.988497 kcal Electronic energy + Delta-G solvation = -24435.141166 eV Core-core repulsion = 20633.105648 eV Total energy + Delta-G solvation = -3802.035518 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64388 -39.92931 -39.24350 -36.31422 -35.15666 -32.72951 -32.42984 -31.01027 -28.74436 -27.53398 -27.07691 -26.38177 -25.50592 -24.31999 -22.49772 -20.92525 -19.23159 -18.95970 -17.67303 -17.07083 -16.80383 -16.71240 -16.30537 -16.12523 -15.75819 -15.33886 -14.89186 -14.80323 -14.20968 -13.87438 -13.50098 -13.40398 -13.28299 -13.16734 -12.89690 -12.58093 -12.55213 -12.50275 -12.30695 -12.24605 -11.87864 -11.06855 -11.06179 -11.02208 -10.75885 -10.65943 -10.59556 -10.56777 -10.38178 -9.81026 -9.43135 -9.24161 -9.06675 -8.46146 -8.23285 -6.50483 -6.21871 -3.92471 -0.44523 0.41194 0.97374 1.03515 2.44973 2.68028 3.00702 3.03975 3.22344 3.26656 3.30355 3.35966 3.63411 4.15226 4.20173 4.27508 4.70153 4.78434 4.96123 5.03779 5.08709 5.13219 5.15928 5.36383 5.42436 5.49280 5.52380 5.65343 5.75134 5.76151 5.87270 5.91671 6.08679 6.13726 6.61325 6.87173 7.02685 7.49707 7.59646 7.63339 8.35097 8.51591 9.23525 10.85521 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.037003 B = 0.001826 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.519244 B =15332.028592 C =15904.479558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.622 5.622 3 C 0.106 3.894 4 C 0.101 3.899 5 N -0.591 5.591 6 C 0.078 3.922 7 C 0.600 3.400 8 O -0.525 6.525 9 C -0.021 4.021 10 C -0.236 4.236 11 S 0.462 5.538 12 N -0.292 5.292 13 N -0.205 5.205 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.209 0.791 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 30.721 -2.775 30.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.359 5.359 3 C -0.019 4.019 4 C -0.023 4.023 5 N -0.322 5.322 6 C -0.065 4.065 7 C 0.383 3.617 8 O -0.401 6.401 9 C -0.168 4.168 10 C -0.393 4.393 11 S 0.598 5.402 12 N -0.273 5.273 13 N -0.075 5.075 14 C 0.321 3.679 15 O -0.389 6.389 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.226 0.774 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.218 31.371 -3.008 31.516 hybrid contribution -3.459 -1.835 0.152 3.919 sum -3.242 29.536 -2.857 29.850 Atomic orbital electron populations 1.21808 0.79271 1.03235 1.01963 1.47800 1.07037 1.05296 1.75722 1.21684 0.98549 0.85226 0.96412 1.22033 0.98065 0.83713 0.98461 1.47642 1.08299 1.05170 1.71133 1.22179 0.77364 1.03767 1.03213 1.16746 0.86000 0.81509 0.77465 1.90840 1.12552 1.86360 1.50315 1.22667 0.89948 0.96485 1.07686 1.28905 1.09286 0.95987 1.05151 1.81593 0.91933 1.18702 1.47974 1.78724 1.26442 0.99736 1.22375 1.71898 1.09214 1.13544 1.12859 1.20403 0.87960 0.84572 0.74968 1.90688 1.13689 1.86797 1.47716 1.23562 1.04568 0.97115 1.04828 1.85380 1.08070 0.93357 1.96714 1.22859 0.94314 0.92193 1.58940 0.90922 1.24994 0.95678 0.98383 0.94543 1.70021 1.11730 1.21653 1.46861 0.86167 0.80271 0.80714 0.78348 1.20275 1.20757 1.19693 0.92616 0.90532 0.91228 0.89592 0.90414 0.89478 0.89084 0.91639 0.89612 0.90196 0.77432 0.89177 0.89166 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.28 59.84 0.62 1.49 16 2 N -0.62 -8.81 2.87 -181.57 -0.52 -9.34 16 3 C 0.11 1.34 5.77 -4.04 -0.02 1.31 16 4 C 0.10 1.20 5.67 -4.04 -0.02 1.17 16 5 N -0.59 -6.52 2.87 -182.84 -0.53 -7.04 16 6 C 0.08 0.75 9.23 59.84 0.55 1.31 16 7 C 0.60 6.81 7.65 -12.51 -0.10 6.72 16 8 O -0.53 -6.98 16.44 5.28 0.09 -6.89 16 9 C -0.02 -0.20 6.57 -83.78 -0.55 -0.75 16 10 C -0.24 -1.46 11.22 30.64 0.34 -1.12 16 11 S 0.46 2.15 23.38 -107.50 -2.51 -0.36 16 12 N -0.29 -2.51 12.49 60.35 0.75 -1.75 16 13 N -0.20 -1.99 8.14 32.74 0.27 -1.72 16 14 C 0.53 9.96 7.69 -10.98 -0.08 9.87 16 15 O -0.51 -11.37 15.44 5.56 0.09 -11.28 16 16 C -0.15 -3.02 4.71 36.01 0.17 -2.86 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 22 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.82 6.44 -51.93 -0.33 0.49 16 28 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 29 H 0.09 1.20 7.42 -51.93 -0.39 0.81 16 30 H 0.08 0.90 7.89 -51.93 -0.41 0.49 16 31 H 0.09 1.04 7.50 -51.93 -0.39 0.66 16 32 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 33 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.09 0.81 5.86 -51.93 -0.30 0.51 16 35 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 36 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.09 1.68 7.40 -51.92 -0.38 1.30 16 38 H 0.09 1.69 8.11 -51.92 -0.42 1.26 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -35.99 365.13 -6.95 -42.94 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.69 Total: -1.42 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 1.10 Total: 4.26 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.71 Total: -45.20 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.17 Total: -18.18 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -4.73 Total: -4.24 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.99 -6.95 -42.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501032031.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.931 kcal (2) G-P(sol) polarization free energy of solvation -35.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds