Wall clock time and date at job start Wed Apr 1 2020 03:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00483 * 2 1 4 4 C 1.53001 * 109.46926 * 270.00247 * 3 2 1 5 5 N 1.46504 * 109.46868 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00103 * 89.99921 * 5 4 3 7 7 C 1.34779 * 119.99540 * 270.00016 * 5 4 3 8 8 O 1.21600 * 120.00277 * 5.40409 * 7 5 4 9 9 C 1.47447 * 119.99387 * 185.40263 * 7 5 4 10 10 C 1.37987 * 124.15316 * 186.17036 * 9 7 5 11 11 S 1.72106 * 104.03317 * 179.97438 * 10 9 7 12 12 N 1.56410 * 96.15300 * 359.97438 * 11 10 9 13 13 N 1.27418 * 109.87665 * 359.75227 * 12 11 10 14 14 C 1.34782 * 119.99955 * 180.02562 * 2 1 3 15 15 O 1.21278 * 119.99908 * 180.02562 * 14 2 1 16 16 C 1.50704 * 119.99929 * 359.97438 * 14 2 1 17 17 S 1.80998 * 109.46879 * 179.97438 * 16 14 2 18 18 C 1.76208 * 99.99615 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00070 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99734 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99773 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46973 * 89.99990 * 22 20 18 24 24 H 1.48501 * 109.47159 * 210.00175 * 22 20 18 25 25 H 1.48498 * 109.47053 * 330.00361 * 22 20 18 26 26 H 1.08992 * 109.47246 * 90.00216 * 1 2 3 27 27 H 1.09000 * 109.47442 * 210.00215 * 1 2 3 28 28 H 1.09000 * 109.46938 * 329.99417 * 1 2 3 29 29 H 1.08995 * 109.47250 * 149.99689 * 3 2 1 30 30 H 1.09005 * 109.46449 * 30.00130 * 3 2 1 31 31 H 1.09002 * 109.46774 * 59.99704 * 4 3 2 32 32 H 1.08994 * 109.46941 * 299.99806 * 4 3 2 33 33 H 1.09004 * 109.46896 * 95.33888 * 6 5 4 34 34 H 1.08998 * 109.47061 * 215.33845 * 6 5 4 35 35 H 1.09002 * 109.47097 * 335.34222 * 6 5 4 36 36 H 1.07993 * 127.98198 * 359.95689 * 10 9 7 37 37 H 1.09002 * 109.47271 * 300.00584 * 16 14 2 38 38 H 1.08999 * 109.46607 * 60.00404 * 16 14 2 39 39 H 0.97006 * 119.99583 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 7 3.1846 2.9793 -1.4425 6 6 4.6496 2.9799 -1.4424 7 6 2.5102 4.1463 -1.4426 8 8 1.2983 4.1482 -1.3436 9 6 3.2422 5.4206 -1.5628 10 6 2.6555 6.6645 -1.4505 11 16 3.9614 7.7634 -1.6725 12 7 5.0651 6.6736 -1.8741 13 7 4.5484 5.5122 -1.7860 14 6 2.1389 -1.1673 -0.0005 15 8 3.3516 -1.1672 -0.0001 16 6 1.3853 -2.4724 -0.0005 17 16 2.5615 -3.8481 -0.0020 18 6 1.4413 -5.2083 -0.0026 19 1 0.3761 -5.0305 -0.0024 20 6 1.9281 -6.5081 -0.0032 21 7 3.2264 -6.7247 -0.0029 22 14 0.7406 -7.9501 -0.0045 23 1 0.4264 -8.3313 -1.4048 24 1 1.3616 -9.1034 0.6951 25 1 -0.5103 -7.5618 0.6953 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 3.1499 1.1383 0.5139 30 1 1.6084 2.0283 0.5139 31 1 1.5001 1.8407 -1.9563 32 1 3.0415 0.9507 -1.9563 33 1 5.0130 3.0756 -2.4656 34 1 5.0125 3.8183 -0.8480 35 1 5.0132 2.0460 -1.0135 36 1 1.6168 6.8952 -1.2661 37 1 0.7589 -2.5303 0.8896 38 1 0.7584 -2.5298 -0.8903 39 1 3.5666 -7.6331 -0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501032031.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:31 Heat of formation + Delta-G solvation = -0.330690 kcal Electronic energy + Delta-G solvation = -24436.239089 eV Core-core repulsion = 20633.105648 eV Total energy + Delta-G solvation = -3803.133440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.29616 -41.02997 -40.34532 -37.36263 -36.32519 -34.57773 -33.39259 -32.15581 -30.03905 -28.23828 -27.90651 -27.68499 -27.30869 -25.31396 -23.34519 -21.56126 -20.68407 -19.73513 -19.51605 -18.13953 -17.84453 -17.48532 -17.25634 -17.05094 -16.87328 -16.81472 -16.30581 -15.97196 -15.66460 -15.11012 -14.67087 -14.52600 -14.29733 -14.22847 -14.06107 -13.89991 -13.58785 -13.32213 -13.20968 -13.13607 -13.04189 -13.02891 -12.88662 -12.60943 -12.08239 -11.71281 -11.48028 -11.18195 -11.16619 -11.13651 -10.93880 -10.86913 -10.27074 -10.23493 -9.56927 -8.66203 -8.34098 -6.12021 -0.94474 -0.05020 0.27628 0.53577 1.23865 1.42867 1.43047 1.52072 1.56248 1.72543 1.89991 2.22051 2.28634 2.69546 3.00080 3.26350 3.49907 3.64929 3.69767 3.95088 3.97254 4.19223 4.24845 4.28633 4.32746 4.38269 4.49659 4.55481 4.63784 4.69349 4.84798 4.93449 4.98654 5.17728 5.42674 5.51077 6.03814 6.20135 6.23022 6.40575 6.80013 7.07265 7.09999 8.75022 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.037003 B = 0.001826 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.519244 B =15332.028592 C =15904.479558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.609 5.609 3 C 0.111 3.889 4 C 0.109 3.891 5 N -0.593 5.593 6 C 0.084 3.916 7 C 0.600 3.400 8 O -0.549 6.549 9 C -0.048 4.048 10 C -0.234 4.234 11 S 0.562 5.438 12 N -0.335 5.335 13 N -0.227 5.227 14 C 0.532 3.468 15 O -0.559 6.559 16 C -0.124 4.124 17 S -0.150 6.150 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.230 0.770 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.261 32.699 -2.779 33.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.343 5.343 3 C -0.014 4.014 4 C -0.015 4.015 5 N -0.324 5.324 6 C -0.058 4.058 7 C 0.385 3.615 8 O -0.426 6.426 9 C -0.195 4.195 10 C -0.390 4.390 11 S 0.697 5.303 12 N -0.316 5.316 13 N -0.096 5.096 14 C 0.320 3.680 15 O -0.437 6.437 16 C -0.275 4.275 17 S 0.077 5.923 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.182 1.182 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.246 0.754 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.260 33.393 -3.017 33.605 hybrid contribution -2.739 -2.145 0.150 3.482 sum -4.999 31.248 -2.867 31.775 Atomic orbital electron populations 1.22114 0.76707 1.04733 1.03458 1.47760 1.08563 1.04334 1.73638 1.21731 0.98022 0.84606 0.96992 1.21828 0.98024 0.83961 0.97650 1.47681 1.08664 1.04990 1.71109 1.22147 0.76744 1.03567 1.03366 1.16981 0.85859 0.82051 0.76640 1.90809 1.13403 1.86843 1.51548 1.22481 0.90401 0.96513 1.10124 1.29283 1.10917 0.95546 1.03284 1.81235 0.89084 1.15383 1.44577 1.78392 1.28766 1.00493 1.23938 1.71921 1.09462 1.14520 1.13732 1.20171 0.87340 0.85334 0.75145 1.90676 1.15419 1.87401 1.50168 1.23385 1.02771 0.94866 1.06511 1.85555 1.12543 0.97201 1.97029 1.23199 0.94666 0.92648 1.58811 0.89885 1.26125 0.97588 1.01685 0.93777 1.70186 1.14078 1.22445 1.48023 0.84958 0.77924 0.76354 0.78780 1.19339 1.20344 1.18155 0.91087 0.90147 0.88704 0.91187 0.88626 0.89207 0.90477 0.91462 0.89180 0.90794 0.75365 0.87338 0.87345 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 10.28 127.77 1.31 2.67 16 2 N -0.61 -16.53 2.87 -846.76 -2.43 -18.96 16 3 C 0.11 2.73 5.77 86.38 0.50 3.23 16 4 C 0.11 2.59 5.67 86.38 0.49 3.08 16 5 N -0.59 -13.12 2.87 -850.64 -2.44 -15.56 16 6 C 0.08 1.69 9.23 127.77 1.18 2.87 16 7 C 0.60 13.27 7.65 86.67 0.66 13.94 16 8 O -0.55 -13.98 16.44 -4.03 -0.07 -14.05 16 9 C -0.05 -0.85 6.57 41.36 0.27 -0.58 16 10 C -0.23 -2.36 11.22 67.76 0.76 -1.60 16 11 S 0.56 3.75 23.38 -56.49 -1.32 2.43 16 12 N -0.34 -5.33 12.49 37.02 0.46 -4.86 16 13 N -0.23 -4.28 8.14 -50.34 -0.41 -4.69 16 14 C 0.53 19.90 7.69 87.66 0.67 20.57 16 15 O -0.56 -25.53 15.44 -3.02 -0.05 -25.58 16 16 C -0.12 -4.95 4.71 71.24 0.34 -4.61 16 17 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 18 C -0.55 -31.08 9.50 67.95 0.65 -30.44 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -55.97 13.22 21.65 0.29 -55.69 16 22 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 1.49 6.44 -2.39 -0.02 1.48 16 28 H 0.09 1.38 7.89 -2.39 -0.02 1.36 16 29 H 0.07 1.99 7.42 -2.39 -0.02 1.97 16 30 H 0.10 2.05 7.89 -2.38 -0.02 2.03 16 31 H 0.09 2.08 7.50 -2.39 -0.02 2.06 16 32 H 0.08 2.04 8.07 -2.39 -0.02 2.02 16 33 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 34 H 0.09 1.76 5.86 -2.39 -0.01 1.74 16 35 H 0.07 1.54 8.03 -2.39 -0.02 1.52 16 36 H 0.23 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.11 3.91 7.40 -2.39 -0.02 3.89 16 38 H 0.11 3.91 8.11 -2.40 -0.02 3.89 16 39 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -80.71 365.13 3.28 -77.43 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.09 Total: 13.12 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 7.30 Total: 10.33 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -4.54 Total: -99.77 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -0.11 Total: -39.63 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -2.48 Total: -7.08 kcal Total: -80.71 3.28 -77.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501032031.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.104 kcal (2) G-P(sol) polarization free energy of solvation -80.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds