Wall clock time and date at job start Wed Apr 1 2020 03:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 119.99960 * 2 1 4 4 H 1.48500 * 109.47317 * 240.00425 * 3 2 1 5 5 H 1.48498 * 109.46718 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47014 * 120.00241 * 3 2 1 7 7 C 1.38812 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00201 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99736 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46555 * 179.97438 * 10 9 7 12 12 H 1.08995 * 112.85611 * 43.80394 * 11 10 9 13 13 C 1.53785 * 113.61132 * 175.00067 * 11 10 9 14 14 C 1.53784 * 87.07953 * 140.06099 * 13 11 10 15 15 H 1.09002 * 113.61499 * 219.93212 * 14 13 11 16 16 N 1.46506 * 113.61158 * 89.11694 * 14 13 11 17 17 C 1.34776 * 119.99788 * 156.52644 * 16 14 13 18 18 O 1.21576 * 119.99889 * 0.02562 * 17 16 14 19 19 C 1.47626 * 120.00008 * 179.97438 * 17 16 14 20 20 C 1.39882 * 120.16038 * 90.00005 * 19 17 16 21 21 F 1.35102 * 120.08312 * 0.02562 * 20 19 17 22 22 C 1.38223 * 119.83743 * 180.02562 * 20 19 17 23 23 C 1.38282 * 120.18547 * 359.96096 * 22 20 19 24 24 C 1.38529 * 120.33325 * 0.02562 * 23 22 20 25 25 F 1.35100 * 119.92232 * 180.02562 * 24 23 22 26 26 C 1.38285 * 120.15647 * 0.02562 * 24 23 22 27 27 Cl 1.73602 * 120.09317 * 179.72350 * 26 24 23 28 28 C 1.53782 * 87.17375 * 334.52622 * 14 13 11 29 29 H 0.97001 * 120.00028 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99424 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47340 * 60.00072 * 10 9 7 32 32 H 1.09001 * 109.47537 * 299.99495 * 10 9 7 33 33 H 1.08998 * 113.61721 * 25.51855 * 13 11 10 34 34 H 1.08997 * 113.68759 * 254.62153 * 13 11 10 35 35 H 0.97000 * 119.99744 * 336.52869 * 16 14 13 36 36 H 1.08002 * 119.91067 * 179.97438 * 22 20 19 37 37 H 1.07995 * 119.83813 * 180.02562 * 23 22 20 38 38 H 1.08996 * 113.61179 * 140.02678 * 28 14 13 39 39 H 1.08995 * 113.60830 * 270.92488 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0583 -3.6567 -0.0027 11 6 1.0640 -4.8197 -0.0031 12 1 0.2377 -4.6699 -0.6979 13 6 1.7306 -6.1999 -0.1271 14 6 0.7041 -6.7009 0.9025 15 1 1.1215 -7.3924 1.6345 16 7 -0.5389 -7.1909 0.3013 17 6 -1.3120 -8.0676 0.9722 18 8 -0.9782 -8.4514 2.0765 19 6 -2.5648 -8.5609 0.3667 20 6 -2.5562 -9.7143 -0.4247 21 9 -1.4007 -10.3812 -0.6372 22 6 -3.7330 -10.1700 -0.9888 23 6 -4.9171 -9.4895 -0.7721 24 6 -4.9341 -8.3466 0.0107 25 9 -6.0957 -7.6886 0.2174 26 6 -3.7648 -7.8778 0.5810 27 17 -3.7867 -6.4414 1.5557 28 6 0.6149 -5.2506 1.4061 29 1 -0.4850 0.8401 0.0004 30 1 0.3557 -2.3880 -0.0016 31 1 2.6849 -3.7152 0.8872 32 1 2.6849 -3.7137 -0.8928 33 1 2.7585 -6.2225 0.2348 34 1 1.6184 -6.6536 -1.1118 35 1 -0.8053 -6.8843 -0.5795 36 1 -3.7277 -11.0601 -1.6004 37 1 -5.8333 -9.8507 -1.2152 38 1 -0.3983 -4.9374 1.6579 39 1 1.3384 -5.0142 2.1862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506900301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:53 Heat of formation + Delta-G solvation = -69.241643 kcal Electronic energy + Delta-G solvation = -26889.941842 eV Core-core repulsion = 22495.643355 eV Total energy + Delta-G solvation = -4394.298488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.57316 -49.50405 -40.62786 -39.31751 -38.08274 -37.03721 -34.57655 -33.34557 -31.92982 -30.83502 -30.59511 -26.96041 -25.53364 -25.13032 -23.57814 -23.26304 -21.59846 -21.29806 -19.16688 -18.84833 -18.19903 -18.09396 -17.12474 -16.91030 -16.54936 -16.08659 -15.91095 -15.46127 -15.04006 -14.93485 -14.87111 -14.58376 -14.13311 -13.93685 -13.76548 -13.38214 -13.27865 -13.25697 -12.75589 -12.39743 -12.32054 -12.15982 -11.89721 -11.67118 -11.50610 -11.03600 -10.80901 -10.56488 -10.38474 -10.28875 -10.11396 -9.85352 -9.73441 -9.61119 -9.21802 -9.13725 -8.83224 -6.88906 -5.74288 -3.02577 0.01236 0.14135 1.38131 2.12103 2.43248 2.73873 3.40995 3.45208 3.46183 3.49414 3.50572 3.87203 4.13397 4.19834 4.52872 4.58772 4.64245 4.79339 4.97125 5.01094 5.08547 5.11796 5.16079 5.26026 5.59563 5.65901 5.82844 5.87344 5.92004 5.96684 6.09339 6.19921 6.27479 6.41183 6.57018 6.78681 6.93128 7.19618 7.71163 7.84603 8.44891 9.55775 10.14986 10.49318 11.48579 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002637 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.090020 B =10613.965251 C =11816.029240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.163 3.837 11 C -0.114 4.114 12 H 0.088 0.912 13 C -0.136 4.136 14 C 0.114 3.886 15 H 0.102 0.898 16 N -0.692 5.692 17 C 0.568 3.432 18 O -0.512 6.512 19 C -0.127 4.127 20 C 0.136 3.864 21 F -0.117 7.117 22 C -0.121 4.121 23 C -0.097 4.097 24 C 0.102 3.898 25 F -0.116 7.116 26 C -0.023 4.023 27 Cl -0.007 7.007 28 C -0.137 4.137 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.020 0.980 32 H 0.018 0.982 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.404 0.596 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.070 0.930 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.136 -24.830 -3.276 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.132 4.132 12 H 0.106 0.894 13 C -0.175 4.175 14 C 0.010 3.990 15 H 0.120 0.880 16 N -0.341 5.341 17 C 0.351 3.649 18 O -0.387 6.387 19 C -0.132 4.132 20 C 0.116 3.884 21 F -0.095 7.095 22 C -0.140 4.140 23 C -0.116 4.116 24 C 0.082 3.918 25 F -0.094 7.094 26 C -0.052 4.052 27 Cl 0.022 6.978 28 C -0.176 4.176 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.239 0.761 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.088 0.912 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.737 -24.833 -2.369 26.778 hybrid contribution -0.079 1.312 -0.365 1.365 sum -9.816 -23.520 -2.734 25.633 Atomic orbital electron populations 1.69649 1.05100 1.25701 1.57832 1.24735 0.95515 0.97661 1.03124 0.86274 0.78522 0.83604 0.77832 1.21299 1.21702 1.21294 1.19197 0.90983 0.84279 1.42609 0.91306 1.42340 1.05835 0.99984 1.89424 1.20626 0.92968 0.85186 0.97684 1.22825 0.99125 0.94254 0.97046 0.89397 1.23306 0.98829 0.96522 0.98795 1.22044 0.83847 0.96298 0.96828 0.88019 1.45618 1.23113 1.44273 1.21144 1.17608 0.82504 0.79384 0.85367 1.90853 1.71544 1.57577 1.18709 1.19718 0.94493 0.97039 1.01931 1.17411 0.82927 0.90839 0.97233 1.91603 1.46481 1.78634 1.92784 1.21066 0.89896 1.01854 1.01151 1.21134 0.99966 0.93040 0.97472 1.17212 0.80994 0.93535 1.00070 1.91605 1.44954 1.79648 1.93203 1.20784 0.92470 0.93116 0.98840 1.98488 1.98557 1.33209 1.67537 1.23456 1.02662 0.93693 0.97781 0.93511 0.78330 0.96196 0.96394 0.88453 0.91129 0.76069 0.82197 0.82077 0.91167 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.63 5.60 -59.91 -0.34 -18.96 16 10 C 0.16 3.22 6.10 -4.04 -0.02 3.19 16 11 C -0.11 -1.74 3.64 -89.66 -0.33 -2.07 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 13 C -0.14 -1.60 7.38 -25.91 -0.19 -1.79 16 14 C 0.11 1.43 4.30 -67.11 -0.29 1.15 16 15 H 0.10 1.33 7.50 -51.93 -0.39 0.94 16 16 N -0.69 -8.13 5.26 -54.02 -0.28 -8.42 16 17 C 0.57 7.48 5.95 -12.43 -0.07 7.41 16 18 O -0.51 -8.48 16.72 5.30 0.09 -8.39 16 19 C -0.13 -1.36 5.64 -104.89 -0.59 -1.96 16 20 C 0.14 1.18 7.29 -38.97 -0.28 0.90 16 21 F -0.12 -1.13 16.83 2.25 0.04 -1.10 16 22 C -0.12 -0.65 10.01 -39.57 -0.40 -1.05 16 23 C -0.10 -0.52 10.01 -39.46 -0.40 -0.92 16 24 C 0.10 0.87 7.26 -39.46 -0.29 0.58 16 25 F -0.12 -1.09 16.83 2.25 0.04 -1.05 16 26 C -0.02 -0.25 6.36 -39.01 -0.25 -0.49 16 27 Cl -0.01 -0.09 27.70 -51.86 -1.44 -1.53 16 28 C -0.14 -2.04 7.45 -25.78 -0.19 -2.23 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.38 10.26 7.67 -40.82 -0.31 9.95 16 31 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 4.01 8.69 -40.82 -0.35 3.66 16 36 H 0.16 0.38 8.06 -52.49 -0.42 -0.04 16 37 H 0.16 0.37 8.06 -52.49 -0.42 -0.06 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 1.40 7.91 -51.93 -0.41 0.98 16 LS Contribution 362.29 15.07 5.46 5.46 Total: -1.00 -33.70 362.29 -8.65 -42.35 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.38 Total: 6.55 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -3.54 Total: -4.72 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.10 Total: -55.17 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.08 Total: -2.14 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.44 Total: -1.53 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.70 -8.65 -42.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506900301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.892 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds