Wall clock time and date at job start Wed Apr 1 2020 03:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 119.99960 * 2 1 4 4 H 1.48500 * 109.47317 * 240.00425 * 3 2 1 5 5 H 1.48498 * 109.46718 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47014 * 120.00241 * 3 2 1 7 7 C 1.38812 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00201 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99736 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46555 * 179.97438 * 10 9 7 12 12 H 1.08995 * 112.85611 * 43.80394 * 11 10 9 13 13 C 1.53785 * 113.61132 * 175.00067 * 11 10 9 14 14 C 1.53784 * 87.07953 * 140.06099 * 13 11 10 15 15 H 1.09002 * 113.61499 * 219.93212 * 14 13 11 16 16 N 1.46506 * 113.61158 * 89.11694 * 14 13 11 17 17 C 1.34776 * 119.99788 * 156.52644 * 16 14 13 18 18 O 1.21576 * 119.99889 * 0.02562 * 17 16 14 19 19 C 1.47626 * 120.00008 * 179.97438 * 17 16 14 20 20 C 1.39882 * 120.16038 * 90.00005 * 19 17 16 21 21 F 1.35102 * 120.08312 * 0.02562 * 20 19 17 22 22 C 1.38223 * 119.83743 * 180.02562 * 20 19 17 23 23 C 1.38282 * 120.18547 * 359.96096 * 22 20 19 24 24 C 1.38529 * 120.33325 * 0.02562 * 23 22 20 25 25 F 1.35100 * 119.92232 * 180.02562 * 24 23 22 26 26 C 1.38285 * 120.15647 * 0.02562 * 24 23 22 27 27 Cl 1.73602 * 120.09317 * 179.72350 * 26 24 23 28 28 C 1.53782 * 87.17375 * 334.52622 * 14 13 11 29 29 H 0.97001 * 120.00028 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99424 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47340 * 60.00072 * 10 9 7 32 32 H 1.09001 * 109.47537 * 299.99495 * 10 9 7 33 33 H 1.08998 * 113.61721 * 25.51855 * 13 11 10 34 34 H 1.08997 * 113.68759 * 254.62153 * 13 11 10 35 35 H 0.97000 * 119.99744 * 336.52869 * 16 14 13 36 36 H 1.08002 * 119.91067 * 179.97438 * 22 20 19 37 37 H 1.07995 * 119.83813 * 180.02562 * 23 22 20 38 38 H 1.08996 * 113.61179 * 140.02678 * 28 14 13 39 39 H 1.08995 * 113.60830 * 270.92488 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0583 -3.6567 -0.0027 11 6 1.0640 -4.8197 -0.0031 12 1 0.2377 -4.6699 -0.6979 13 6 1.7306 -6.1999 -0.1271 14 6 0.7041 -6.7009 0.9025 15 1 1.1215 -7.3924 1.6345 16 7 -0.5389 -7.1909 0.3013 17 6 -1.3120 -8.0676 0.9722 18 8 -0.9782 -8.4514 2.0765 19 6 -2.5648 -8.5609 0.3667 20 6 -2.5562 -9.7143 -0.4247 21 9 -1.4007 -10.3812 -0.6372 22 6 -3.7330 -10.1700 -0.9888 23 6 -4.9171 -9.4895 -0.7721 24 6 -4.9341 -8.3466 0.0107 25 9 -6.0957 -7.6886 0.2174 26 6 -3.7648 -7.8778 0.5810 27 17 -3.7867 -6.4414 1.5557 28 6 0.6149 -5.2506 1.4061 29 1 -0.4850 0.8401 0.0004 30 1 0.3557 -2.3880 -0.0016 31 1 2.6849 -3.7152 0.8872 32 1 2.6849 -3.7137 -0.8928 33 1 2.7585 -6.2225 0.2348 34 1 1.6184 -6.6536 -1.1118 35 1 -0.8053 -6.8843 -0.5795 36 1 -3.7277 -11.0601 -1.6004 37 1 -5.8333 -9.8507 -1.2152 38 1 -0.3983 -4.9374 1.6579 39 1 1.3384 -5.0142 2.1862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506900301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:52 Heat of formation + Delta-G solvation = -91.078655 kcal Electronic energy + Delta-G solvation = -26890.888766 eV Core-core repulsion = 22495.643355 eV Total energy + Delta-G solvation = -4395.245412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.25808 -50.17975 -41.61517 -40.20693 -39.10774 -37.86052 -36.36744 -34.62935 -33.03651 -32.35447 -31.29213 -28.57863 -26.66711 -26.09781 -25.01472 -24.15014 -23.01958 -22.29419 -20.40731 -19.65487 -19.07651 -18.87799 -18.76269 -17.83337 -17.29824 -17.05273 -16.72194 -16.60843 -16.22987 -16.01790 -15.83570 -15.62375 -15.51634 -15.18939 -15.00308 -14.60847 -14.33751 -14.11020 -13.96945 -13.75342 -13.40935 -13.13322 -12.97509 -12.91765 -12.68871 -12.59159 -12.39851 -12.24271 -11.93856 -11.81037 -11.40563 -11.34031 -11.17891 -10.86450 -10.41474 -10.21899 -9.87781 -8.98292 -7.95159 -5.23635 -0.61797 -0.48047 0.60012 1.12916 1.46011 1.49323 1.55409 1.75343 1.94672 2.55745 2.76939 2.78906 3.22005 3.37486 3.49830 3.53333 3.55436 3.61665 3.86908 3.91207 3.93556 4.31725 4.40976 4.42826 4.52557 4.67464 4.72225 4.78036 4.81890 4.83188 4.89331 4.96785 5.11791 5.22272 5.29731 5.34252 5.47667 5.59726 6.22260 6.27317 6.87037 7.33181 8.11412 8.33447 9.28255 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002637 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.090020 B =10613.965251 C =11816.029240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.746 5.746 10 C 0.161 3.839 11 C -0.112 4.112 12 H 0.083 0.917 13 C -0.112 4.112 14 C 0.124 3.876 15 H 0.100 0.900 16 N -0.685 5.685 17 C 0.568 3.432 18 O -0.555 6.555 19 C -0.147 4.147 20 C 0.130 3.870 21 F -0.124 7.124 22 C -0.096 4.096 23 C -0.072 4.072 24 C 0.094 3.906 25 F -0.123 7.123 26 C -0.040 4.040 27 Cl -0.040 7.040 28 C -0.142 4.142 29 H 0.251 0.749 30 H 0.372 0.628 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.203 0.797 37 H 0.204 0.796 38 H 0.048 0.952 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.123 -27.017 -5.161 29.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.035 3.965 11 C -0.131 4.131 12 H 0.102 0.898 13 C -0.151 4.151 14 C 0.019 3.981 15 H 0.118 0.882 16 N -0.335 5.335 17 C 0.353 3.647 18 O -0.433 6.433 19 C -0.152 4.152 20 C 0.109 3.891 21 F -0.103 7.103 22 C -0.114 4.114 23 C -0.091 4.091 24 C 0.074 3.926 25 F -0.102 7.102 26 C -0.069 4.069 27 Cl -0.011 7.011 28 C -0.181 4.181 29 H 0.059 0.941 30 H 0.204 0.796 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.251 0.749 36 H 0.220 0.780 37 H 0.221 0.779 38 H 0.067 0.933 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.690 -27.045 -4.284 29.046 hybrid contribution -0.099 1.888 0.189 1.900 sum -9.790 -25.156 -4.095 27.303 Atomic orbital electron populations 1.69815 1.06643 1.26082 1.59587 1.25580 0.96399 1.01158 1.03795 0.85213 0.77206 0.79130 0.78234 1.20179 1.22183 1.20492 1.19633 0.91516 0.85521 1.41156 0.90670 1.42586 1.05575 1.01322 1.89342 1.20816 0.93699 0.84427 0.97595 1.22742 0.98546 0.94520 0.97255 0.89823 1.23218 0.98920 0.93148 0.99766 1.21890 0.84471 0.94661 0.97113 0.88213 1.45600 1.22753 1.43715 1.21393 1.18006 0.83087 0.78822 0.84799 1.90818 1.72800 1.59135 1.20513 1.19544 0.93245 0.98589 1.03804 1.17661 0.83818 0.90210 0.97387 1.91586 1.47223 1.78619 1.92834 1.21527 0.88105 1.02235 0.99534 1.21617 1.01543 0.90787 0.95104 1.17500 0.79995 0.94509 1.00608 1.91589 1.45156 1.80068 1.93365 1.20868 0.93491 0.92695 0.99832 1.98469 1.98646 1.35249 1.68733 1.23460 1.01312 0.95708 0.97586 0.94069 0.79626 0.96096 0.95876 0.87009 0.88795 0.74941 0.78028 0.77907 0.93266 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.75 -38.53 5.60 -343.45 -1.92 -40.45 16 10 C 0.16 6.31 6.10 86.38 0.53 6.84 16 11 C -0.11 -3.39 3.64 -10.17 -0.04 -3.43 16 12 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 13 C -0.11 -2.43 7.38 31.12 0.23 -2.20 16 14 C 0.12 3.06 4.30 45.52 0.20 3.26 16 15 H 0.10 2.59 7.50 -2.39 -0.02 2.57 16 16 N -0.68 -16.09 5.26 -443.10 -2.33 -18.43 16 17 C 0.57 15.23 5.95 86.72 0.52 15.75 16 18 O -0.55 -19.04 16.72 -3.96 -0.07 -19.10 16 19 C -0.15 -3.11 5.64 -20.04 -0.11 -3.22 16 20 C 0.13 1.97 7.29 22.66 0.17 2.13 16 21 F -0.12 -2.18 16.83 44.97 0.76 -1.42 16 22 C -0.10 -0.63 10.01 22.28 0.22 -0.40 16 23 C -0.07 -0.48 10.01 22.35 0.22 -0.25 16 24 C 0.09 1.44 7.26 22.35 0.16 1.61 16 25 F -0.12 -2.19 16.83 44.97 0.76 -1.43 16 26 C -0.04 -0.85 6.36 22.64 0.14 -0.70 16 27 Cl -0.04 -1.06 27.70 -2.72 -0.08 -1.14 16 28 C -0.14 -4.32 7.45 31.21 0.23 -4.08 16 29 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.37 20.56 7.67 -92.71 -0.71 19.85 16 31 H 0.02 0.83 7.85 -2.39 -0.02 0.81 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 2.17 8.10 -2.39 -0.02 2.16 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 8.05 8.69 -92.71 -0.81 7.25 16 36 H 0.20 -0.29 8.06 -2.91 -0.02 -0.31 16 37 H 0.20 -0.29 8.06 -2.91 -0.02 -0.31 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 2.75 7.91 -2.39 -0.02 2.73 16 Total: -1.00 -75.91 362.29 2.81 -73.10 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.39 Total: 22.22 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 3.78 Total: -1.93 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -3.97 Total: -119.10 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.07 Total: -19.10 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 1.51 Total: -2.85 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -75.91 2.81 -73.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506900301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.978 kcal (2) G-P(sol) polarization free energy of solvation -75.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds