Wall clock time and date at job start Wed Apr 1 2020 02:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46769 * 2 1 4 4 C 1.53003 * 109.47161 * 240.00746 * 2 1 3 5 5 C 1.52995 * 109.47067 * 174.99749 * 4 2 1 6 6 N 1.46508 * 109.47009 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99815 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99865 * 180.02562 * 7 6 5 10 10 S 1.81002 * 109.47120 * 180.02562 * 9 7 6 11 11 C 1.76202 * 99.99766 * 180.02562 * 10 9 7 12 12 H 1.08006 * 120.00331 * 359.97438 * 11 10 9 13 13 C 1.38795 * 119.99955 * 180.02562 * 11 10 9 14 14 N 1.31633 * 120.00215 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00049 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46588 * 90.00414 * 15 13 11 17 17 H 1.48500 * 109.47038 * 209.99799 * 15 13 11 18 18 H 1.48496 * 109.47480 * 330.00155 * 15 13 11 19 19 N 1.46494 * 109.47675 * 119.99995 * 2 1 3 20 20 C 1.34774 * 120.00570 * 275.00316 * 19 2 1 21 21 O 1.21602 * 119.99657 * 0.02562 * 20 19 2 22 22 C 1.47443 * 120.00215 * 179.97438 * 20 19 2 23 23 C 1.37982 * 124.15222 * 179.97438 * 22 20 19 24 24 S 1.72108 * 104.03410 * 179.97438 * 23 22 20 25 25 N 1.56410 * 96.15109 * 0.02562 * 24 23 22 26 26 N 1.27418 * 109.87634 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.46769 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47116 * 299.99447 * 1 2 3 29 29 H 1.08994 * 109.47457 * 59.99840 * 1 2 3 30 30 H 1.09002 * 109.46967 * 294.99425 * 4 2 1 31 31 H 1.08992 * 109.47186 * 54.99211 * 4 2 1 32 32 H 1.08994 * 109.47751 * 299.99432 * 5 4 2 33 33 H 1.09001 * 109.47536 * 59.99908 * 5 4 2 34 34 H 0.97001 * 120.00007 * 359.97438 * 6 5 4 35 35 H 1.09007 * 109.46970 * 300.00252 * 9 7 6 36 36 H 1.09005 * 109.47141 * 59.99600 * 9 7 6 37 37 H 0.97000 * 120.00364 * 179.97438 * 14 13 11 38 38 H 0.97006 * 119.99617 * 94.99702 * 19 2 1 39 39 H 1.07994 * 127.98739 * 359.94674 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 7 4.0532 -1.3041 -2.5098 7 6 5.3741 -1.3394 -2.7754 8 8 6.1584 -0.7996 -2.0242 9 6 5.8764 -2.0497 -4.0060 10 16 7.6803 -1.9220 -4.0822 11 6 7.9872 -2.8106 -5.5725 12 1 7.1635 -3.2334 -6.1286 13 6 9.2876 -2.9680 -6.0313 14 7 10.2917 -2.4532 -5.3534 15 14 9.6131 -3.9106 -7.6109 16 1 9.5848 -2.9725 -8.7618 17 1 10.9465 -4.5598 -7.5342 18 1 8.5668 -4.9486 -7.7925 19 7 2.0185 -0.6906 1.1961 20 6 2.1472 -0.0183 2.3571 21 8 1.8575 1.1614 2.4119 22 6 2.6383 -0.7136 3.5610 23 6 2.8032 -0.1102 4.7909 24 16 3.3890 -1.3746 5.8009 25 7 3.3875 -2.4841 4.6985 26 7 2.9762 -1.9977 3.5950 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.7517 -1.7714 -1.2058 31 1 1.6053 -0.2616 -2.1370 32 1 3.8532 0.4371 -1.3574 33 1 3.9995 -1.0726 -0.4261 34 1 3.4259 -1.7361 -3.1104 35 1 5.5883 -3.1001 -3.9622 36 1 5.4414 -1.5904 -4.8937 37 1 11.2005 -2.5635 -5.6738 38 1 2.2491 -1.6318 1.1524 39 1 2.6097 0.9182 5.0580 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527458899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:06 Heat of formation + Delta-G solvation = -10.567388 kcal Electronic energy + Delta-G solvation = -23830.418844 eV Core-core repulsion = 20026.841507 eV Total energy + Delta-G solvation = -3803.577337 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.53324 -39.91429 -39.11297 -36.93559 -34.48836 -32.83490 -32.42300 -31.75732 -30.09532 -28.14823 -27.55424 -25.49184 -24.72354 -23.27511 -21.51346 -21.16442 -20.32340 -19.76912 -17.85262 -17.23670 -16.80033 -16.47032 -16.25617 -16.01622 -15.83668 -15.34695 -14.97162 -14.79882 -14.53158 -14.12721 -13.96108 -13.78025 -13.23112 -13.08239 -12.95744 -12.63372 -12.54149 -12.36735 -12.17495 -11.68606 -11.56075 -11.30670 -11.05878 -11.01948 -10.86481 -10.75613 -10.58728 -10.55723 -10.39168 -9.81331 -9.58271 -9.38388 -9.06605 -8.89087 -8.22841 -6.49442 -6.21048 -3.91670 -0.40510 0.44636 0.99138 1.06932 2.63934 2.72145 3.02449 3.10736 3.22736 3.28095 3.32093 3.36658 3.68745 4.20395 4.20909 4.36734 4.45604 4.51833 4.71293 4.84947 5.02796 5.04892 5.14024 5.21624 5.29190 5.32233 5.54146 5.63058 5.71100 5.80572 5.89950 5.92259 6.04272 6.14115 6.59662 6.85950 7.14885 7.59973 7.66190 7.70053 8.35710 8.61875 9.24147 10.86385 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.001917 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.713566 B =14600.790293 C =15934.081059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.097 0.903 4 C -0.140 4.140 5 C 0.119 3.881 6 N -0.740 5.740 7 C 0.531 3.469 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.705 5.705 20 C 0.609 3.391 21 O -0.524 6.524 22 C -0.025 4.025 23 C -0.237 4.237 24 S 0.466 5.534 25 N -0.286 5.286 26 N -0.210 5.210 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.412 0.588 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.127 3.587 19.883 30.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.115 0.885 4 C -0.178 4.178 5 C -0.005 4.005 6 N -0.395 5.395 7 C 0.317 3.683 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 N -0.357 5.357 20 C 0.390 3.610 21 O -0.399 6.399 22 C -0.172 4.172 23 C -0.394 4.394 24 S 0.602 5.398 25 N -0.267 5.267 26 N -0.080 5.080 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.248 0.752 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -21.206 3.704 21.890 30.702 hybrid contribution -1.364 -0.673 -3.013 3.375 sum -22.570 3.031 18.877 29.579 Atomic orbital electron populations 1.22174 0.94397 1.02544 1.03001 1.21013 0.94420 0.97828 0.82699 0.88471 1.22136 0.95552 1.02143 0.98005 1.21270 0.92558 0.98041 0.88613 1.45983 1.07844 1.58586 1.27053 1.20324 0.81475 0.79718 0.86816 1.90710 1.54950 1.44342 1.49081 1.23530 1.06840 1.02558 0.97441 1.85419 0.92207 1.72734 1.33094 1.22866 0.95466 1.40150 1.09850 0.90920 1.25000 0.95054 0.95676 0.97912 1.70020 0.99374 1.42677 1.38225 0.86162 0.77808 0.79575 0.81914 1.20272 1.20754 1.19697 1.45958 1.65936 1.14826 1.08959 1.16603 0.77533 0.85543 0.81337 1.90850 1.50223 1.14455 1.84323 1.22661 1.07149 0.90462 0.96933 1.28911 1.04584 1.09199 0.96686 1.81627 1.43866 0.93619 1.20669 1.78671 1.21575 1.25816 1.00603 1.71530 1.10408 1.10240 1.15842 0.92131 0.91828 0.91052 0.90280 0.89096 0.91483 0.91582 0.76818 0.89215 0.89213 0.92184 0.75198 0.77378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.48 37.16 0.35 -0.66 16 2 C 0.14 1.08 2.57 -67.93 -0.17 0.91 16 3 H 0.10 0.86 7.58 -51.93 -0.39 0.47 16 4 C -0.14 -0.95 4.87 -26.73 -0.13 -1.08 16 5 C 0.12 1.33 5.56 -4.04 -0.02 1.31 16 6 N -0.74 -9.52 5.56 -60.29 -0.33 -9.85 16 7 C 0.53 9.95 7.85 -10.98 -0.09 9.86 16 8 O -0.52 -11.98 15.86 5.56 0.09 -11.89 16 9 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 10 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 11 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 12 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 15 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 N -0.70 -6.02 4.53 -54.88 -0.25 -6.27 16 20 C 0.61 6.29 7.78 -12.51 -0.10 6.19 16 21 O -0.52 -6.55 16.46 5.28 0.09 -6.46 16 22 C -0.02 -0.23 6.87 -83.78 -0.58 -0.81 16 23 C -0.24 -1.57 11.21 30.64 0.34 -1.23 16 24 S 0.47 2.56 23.38 -107.50 -2.51 0.05 16 25 N -0.29 -2.75 12.49 60.35 0.75 -2.00 16 26 N -0.21 -2.19 11.24 32.74 0.37 -1.82 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 34 H 0.40 3.79 8.47 -40.82 -0.35 3.45 16 35 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 36 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 37 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.41 3.24 8.19 -40.82 -0.33 2.91 16 39 H 0.21 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -37.94 372.81 -7.48 -45.42 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -4.83 Total: 1.64 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 0.03 Total: -1.39 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 1.27 Total: -45.56 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.17 Total: -18.35 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -4.73 Total: -3.84 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.94 -7.48 -45.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527458899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.855 kcal (2) G-P(sol) polarization free energy of solvation -37.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds