Wall clock time and date at job start Wed Apr 1 2020 03:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99804 * 2 1 4 4 H 1.48491 * 109.47484 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47111 * 120.00195 * 3 2 1 6 6 H 1.48503 * 109.47131 * 239.99662 * 3 2 1 7 7 C 1.38811 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00149 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99478 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99582 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46664 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.88876 * 57.42900 * 11 10 9 13 13 C 1.55162 * 110.99864 * 181.34708 * 11 10 9 14 14 C 1.54323 * 102.93848 * 153.57933 * 13 11 10 15 15 N 1.47026 * 107.27105 * 337.80364 * 14 13 11 16 16 C 1.34779 * 125.64632 * 178.90850 * 15 14 13 17 17 O 1.21590 * 119.99624 * 175.21014 * 16 15 14 18 18 C 1.47571 * 120.00149 * 355.20283 * 16 15 14 19 19 C 1.39733 * 120.13511 * 46.85540 * 18 16 15 20 20 C 1.37752 * 119.92414 * 179.80759 * 19 18 16 21 21 C 1.38727 * 120.20493 * 0.44666 * 20 19 18 22 22 F 1.35100 * 119.86490 * 179.76538 * 21 20 19 23 23 C 1.38589 * 120.27663 * 359.78333 * 21 20 19 24 24 Cl 1.73602 * 119.96686 * 179.97438 * 23 21 20 25 25 C 1.38293 * 120.06689 * 0.02562 * 23 21 20 26 26 F 1.35105 * 120.09945 * 179.97438 * 25 23 21 27 27 C 1.47417 * 108.70370 * 358.94343 * 15 14 13 28 28 H 0.96996 * 119.99817 * 180.02562 * 1 2 3 29 29 H 0.96998 * 120.00216 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47041 * 299.99281 * 10 9 7 31 31 H 1.08994 * 109.47403 * 60.00112 * 10 9 7 32 32 H 1.09003 * 110.72070 * 271.93740 * 13 11 10 33 33 H 1.08994 * 110.72363 * 35.21548 * 13 11 10 34 34 H 1.09004 * 109.88699 * 218.39263 * 14 13 11 35 35 H 1.09000 * 110.01431 * 97.29256 * 14 13 11 36 36 H 1.08000 * 120.03861 * 0.02562 * 19 18 16 37 37 H 1.08005 * 119.89743 * 180.23247 * 20 19 18 38 38 H 1.08998 * 110.36631 * 265.28799 * 27 15 14 39 39 H 1.09000 * 110.46186 * 143.01130 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0639 -4.8196 -0.0022 12 1 0.3949 -4.7586 -0.8607 13 6 1.8032 -6.1834 0.0318 14 6 0.7717 -7.1192 0.6965 15 7 -0.1564 -6.2730 1.4608 16 6 -1.2162 -6.7107 2.1693 17 8 -1.8666 -5.9289 2.8357 18 6 -1.5871 -8.1386 2.1361 19 6 -0.6078 -9.1218 2.2995 20 6 -0.9595 -10.4534 2.2717 21 6 -2.2820 -10.8219 2.0727 22 9 -2.6186 -12.1300 2.0420 23 6 -3.2595 -9.8539 1.9050 24 17 -4.9119 -10.3241 1.6558 25 6 -2.9196 -8.5137 1.9348 26 9 -3.8719 -7.5694 1.7708 27 6 0.2635 -4.8667 1.3232 28 1 -0.4850 -0.8400 0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 2.6855 -3.7141 -0.8912 31 1 2.6841 -3.7149 0.8888 32 1 2.0359 -6.5212 -0.9781 33 1 2.7084 -6.1164 0.6353 34 1 1.2786 -7.8130 1.3672 35 1 0.2252 -7.6737 -0.0663 36 1 0.4232 -8.8380 2.4509 37 1 -0.2027 -11.2129 2.4018 38 1 0.8985 -4.5767 2.1603 39 1 -0.6068 -4.2131 1.2641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567138117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:41 Heat of formation + Delta-G solvation = -80.791436 kcal Electronic energy + Delta-G solvation = -27087.660750 eV Core-core repulsion = 22692.861426 eV Total energy + Delta-G solvation = -4394.799324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -49.69796 -49.48547 -40.65969 -39.03438 -37.73425 -37.12323 -35.00335 -32.75025 -31.44438 -31.25474 -30.38533 -28.68405 -25.84924 -24.40575 -23.73010 -23.26574 -22.22777 -20.45867 -20.05321 -18.79064 -18.17159 -17.91544 -17.17275 -16.81026 -16.58217 -16.24894 -16.11930 -15.82574 -15.35463 -15.05062 -14.83975 -14.52554 -13.96346 -13.89901 -13.67453 -13.37184 -13.27649 -13.18641 -12.91156 -12.77990 -12.55735 -12.22750 -12.07609 -11.95403 -11.63625 -11.13089 -10.92808 -10.74037 -10.62141 -10.46570 -10.22535 -9.97750 -9.52159 -9.46008 -9.18138 -8.90860 -8.79580 -7.03468 -6.10763 -3.11759 -0.08430 0.16434 1.26468 2.16126 2.55748 2.84251 3.01763 3.51551 3.55297 3.58672 3.73119 3.83049 3.88894 4.14768 4.42643 4.50823 4.67577 4.76225 4.79364 4.86337 5.03288 5.11654 5.13614 5.27722 5.30655 5.42056 5.60470 5.71479 5.75701 5.80878 5.83565 5.86190 6.04884 6.16477 6.23216 6.54610 6.66897 7.26093 7.78536 7.85338 8.74967 9.20818 10.07247 10.21099 11.37540 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.002276 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.160603 B =12301.793549 C =13143.636861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.044 4.044 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.335 4.335 8 H 0.065 0.935 9 N -0.745 5.745 10 C 0.171 3.829 11 C -0.108 4.108 12 H 0.085 0.915 13 C -0.124 4.124 14 C 0.095 3.905 15 N -0.609 5.609 16 C 0.572 3.428 17 O -0.513 6.513 18 C -0.156 4.156 19 C -0.030 4.030 20 C -0.155 4.155 21 C 0.158 3.842 22 F -0.113 7.113 23 C -0.126 4.126 24 Cl -0.020 7.020 25 C 0.190 3.810 26 F -0.099 7.099 27 C 0.117 3.883 28 H 0.255 0.745 29 H 0.367 0.633 30 H 0.026 0.974 31 H 0.023 0.977 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.077 0.923 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.831 -28.095 2.847 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.466 4.466 8 H 0.083 0.917 9 N -0.390 5.390 10 C 0.043 3.957 11 C -0.127 4.127 12 H 0.103 0.897 13 C -0.163 4.163 14 C -0.028 4.028 15 N -0.343 5.343 16 C 0.359 3.641 17 O -0.388 6.388 18 C -0.160 4.160 19 C -0.048 4.048 20 C -0.174 4.174 21 C 0.138 3.862 22 F -0.092 7.092 23 C -0.154 4.154 24 Cl 0.009 6.991 25 C 0.169 3.831 26 F -0.076 7.076 27 C -0.004 4.004 28 H 0.067 0.933 29 H 0.201 0.799 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.177 0.823 37 H 0.178 0.822 38 H 0.095 0.905 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.378 -26.066 3.223 26.301 hybrid contribution -0.507 -1.934 -0.094 2.002 sum -1.885 -28.000 3.129 28.238 Atomic orbital electron populations 1.70883 1.06051 1.28499 1.53231 1.25799 0.97049 1.01066 1.00291 0.83240 0.74215 0.75605 0.75827 1.21008 1.22244 1.22259 1.19995 0.91992 0.85753 1.48874 0.91726 1.42376 1.04915 1.00924 1.90830 1.20520 0.92547 0.84229 0.98401 1.22633 0.97923 0.95063 0.97107 0.89688 1.22659 0.97672 0.94406 1.01525 1.22286 0.91301 0.94107 0.95113 1.48443 1.27136 1.09750 1.48942 1.17354 0.80167 0.86388 0.80195 1.90905 1.51748 1.55886 1.40290 1.20041 0.92023 0.95654 1.08292 1.21302 0.99819 0.90602 0.93124 1.21141 0.94143 0.97683 1.04430 1.17255 0.92050 0.77787 0.99132 1.91599 1.92943 1.31537 1.93074 1.20849 0.89050 0.92331 1.13219 1.98427 1.13892 1.91755 1.95002 1.16946 0.85237 0.83852 0.97114 1.91667 1.61926 1.62590 1.91450 1.22389 0.99703 0.80376 0.97974 0.93337 0.79942 0.95623 0.95878 0.89658 0.89962 0.91171 0.91125 0.82336 0.82189 0.90515 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.40 13.70 55.49 0.76 -28.64 16 2 C -0.04 -1.29 5.50 -17.43 -0.10 -1.38 16 3 Si 1.08 25.94 29.92 -169.99 -5.09 20.85 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.34 -9.40 9.99 -15.06 -0.15 -9.55 16 8 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.74 -18.35 5.45 -59.91 -0.33 -18.67 16 10 C 0.17 3.19 5.71 -4.04 -0.02 3.17 16 11 C -0.11 -1.55 3.11 -88.47 -0.27 -1.82 16 12 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 13 C -0.12 -1.19 6.42 -24.89 -0.16 -1.35 16 14 C 0.09 0.82 5.62 -3.06 -0.02 0.80 16 15 N -0.61 -7.84 3.33 -171.73 -0.57 -8.41 16 16 C 0.57 8.24 7.19 -12.45 -0.09 8.15 16 17 O -0.51 -9.72 16.86 5.29 0.09 -9.63 16 18 C -0.16 -1.68 5.43 -104.92 -0.57 -2.25 16 19 C -0.03 -0.20 8.51 -39.20 -0.33 -0.53 16 20 C -0.15 -0.85 10.00 -39.58 -0.40 -1.25 16 21 C 0.16 1.23 7.28 -39.27 -0.29 0.95 16 22 F -0.11 -0.91 16.82 2.25 0.04 -0.87 16 23 C -0.13 -1.23 6.32 -39.43 -0.25 -1.48 16 24 Cl -0.02 -0.20 28.26 -51.86 -1.47 -1.66 16 25 C 0.19 2.20 7.22 -38.95 -0.28 1.92 16 26 F -0.10 -1.40 16.02 2.25 0.04 -1.36 16 27 C 0.12 1.82 6.06 -2.53 -0.02 1.80 16 28 H 0.26 7.87 6.77 -40.82 -0.28 7.59 16 29 H 0.37 9.36 6.37 -40.82 -0.26 9.10 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 34 H 0.07 0.40 5.96 -51.93 -0.31 0.09 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.16 0.69 5.87 -52.49 -0.31 0.38 16 37 H 0.16 0.39 8.06 -52.48 -0.42 -0.04 16 38 H 0.08 1.25 8.00 -51.93 -0.42 0.83 16 39 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -34.81 351.70 -8.32 -43.13 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -4.15 Total: 2.81 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.94 Total: -2.84 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.14 Total: -55.72 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.07 Total: -2.23 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.09 Total: 20.85 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.47 Total: -1.66 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.81 -8.32 -43.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567138117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.664 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds