Wall clock time and date at job start Wed Apr 1 2020 03:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99804 * 2 1 4 4 H 1.48491 * 109.47484 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47111 * 120.00195 * 3 2 1 6 6 H 1.48503 * 109.47131 * 239.99662 * 3 2 1 7 7 C 1.38811 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00149 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99478 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99582 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46664 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.88876 * 57.42900 * 11 10 9 13 13 C 1.55162 * 110.99864 * 181.34708 * 11 10 9 14 14 C 1.54323 * 102.93848 * 153.57933 * 13 11 10 15 15 N 1.47026 * 107.27105 * 337.80364 * 14 13 11 16 16 C 1.34779 * 125.64632 * 178.90850 * 15 14 13 17 17 O 1.21590 * 119.99624 * 175.21014 * 16 15 14 18 18 C 1.47571 * 120.00149 * 355.20283 * 16 15 14 19 19 C 1.39733 * 120.13511 * 46.85540 * 18 16 15 20 20 C 1.37752 * 119.92414 * 179.80759 * 19 18 16 21 21 C 1.38727 * 120.20493 * 0.44666 * 20 19 18 22 22 F 1.35100 * 119.86490 * 179.76538 * 21 20 19 23 23 C 1.38589 * 120.27663 * 359.78333 * 21 20 19 24 24 Cl 1.73602 * 119.96686 * 179.97438 * 23 21 20 25 25 C 1.38293 * 120.06689 * 0.02562 * 23 21 20 26 26 F 1.35105 * 120.09945 * 179.97438 * 25 23 21 27 27 C 1.47417 * 108.70370 * 358.94343 * 15 14 13 28 28 H 0.96996 * 119.99817 * 180.02562 * 1 2 3 29 29 H 0.96998 * 120.00216 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47041 * 299.99281 * 10 9 7 31 31 H 1.08994 * 109.47403 * 60.00112 * 10 9 7 32 32 H 1.09003 * 110.72070 * 271.93740 * 13 11 10 33 33 H 1.08994 * 110.72363 * 35.21548 * 13 11 10 34 34 H 1.09004 * 109.88699 * 218.39263 * 14 13 11 35 35 H 1.09000 * 110.01431 * 97.29256 * 14 13 11 36 36 H 1.08000 * 120.03861 * 0.02562 * 19 18 16 37 37 H 1.08005 * 119.89743 * 180.23247 * 20 19 18 38 38 H 1.08998 * 110.36631 * 265.28799 * 27 15 14 39 39 H 1.09000 * 110.46186 * 143.01130 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0639 -4.8196 -0.0022 12 1 0.3949 -4.7586 -0.8607 13 6 1.8032 -6.1834 0.0318 14 6 0.7717 -7.1192 0.6965 15 7 -0.1564 -6.2730 1.4608 16 6 -1.2162 -6.7107 2.1693 17 8 -1.8666 -5.9289 2.8357 18 6 -1.5871 -8.1386 2.1361 19 6 -0.6078 -9.1218 2.2995 20 6 -0.9595 -10.4534 2.2717 21 6 -2.2820 -10.8219 2.0727 22 9 -2.6186 -12.1300 2.0420 23 6 -3.2595 -9.8539 1.9050 24 17 -4.9119 -10.3241 1.6558 25 6 -2.9196 -8.5137 1.9348 26 9 -3.8719 -7.5694 1.7708 27 6 0.2635 -4.8667 1.3232 28 1 -0.4850 -0.8400 0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 2.6855 -3.7141 -0.8912 31 1 2.6841 -3.7149 0.8888 32 1 2.0359 -6.5212 -0.9781 33 1 2.7084 -6.1164 0.6353 34 1 1.2786 -7.8130 1.3672 35 1 0.2252 -7.6737 -0.0663 36 1 0.4232 -8.8380 2.4509 37 1 -0.2027 -11.2129 2.4018 38 1 0.8985 -4.5767 2.1603 39 1 -0.6068 -4.2131 1.2641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567138117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:40 Heat of formation + Delta-G solvation = -103.738428 kcal Electronic energy + Delta-G solvation = -27088.655806 eV Core-core repulsion = 22692.861426 eV Total energy + Delta-G solvation = -4395.794381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.41687 -50.29903 -41.63565 -39.84752 -38.88298 -37.87504 -36.77817 -34.22596 -32.51944 -31.99900 -31.58385 -29.94342 -27.22351 -25.71545 -24.71460 -24.37405 -23.45273 -21.55416 -21.10720 -19.54918 -19.38763 -18.90714 -18.68620 -17.61226 -17.56709 -17.21253 -17.03843 -16.63297 -16.36461 -16.17596 -15.89964 -15.73681 -15.70939 -15.14542 -14.79590 -14.62669 -14.16448 -14.07004 -13.92342 -13.83926 -13.63640 -13.13428 -13.00831 -12.80613 -12.78829 -12.55655 -12.39041 -12.19663 -11.98619 -11.86431 -11.66628 -11.37689 -11.22505 -10.93433 -10.21089 -10.18111 -9.83473 -9.12537 -8.40811 -5.35122 -0.77597 -0.49239 0.54316 1.25235 1.57859 1.61886 1.68570 1.84555 2.02371 2.32198 2.71558 2.90639 3.01777 3.31822 3.38083 3.42706 3.53792 3.60633 3.79330 3.96346 4.07743 4.19244 4.28529 4.35829 4.41413 4.48333 4.52216 4.63054 4.70706 4.76905 4.79692 4.93132 4.99619 5.08587 5.18218 5.25693 5.35217 5.58193 6.25167 6.46807 6.78340 7.07818 7.97942 8.09398 9.10940 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.002276 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.160603 B =12301.793549 C =13143.636861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.110 4.110 3 Si 1.129 2.871 4 H -0.297 1.297 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.072 0.928 9 N -0.762 5.762 10 C 0.169 3.831 11 C -0.100 4.100 12 H 0.074 0.926 13 C -0.110 4.110 14 C 0.088 3.912 15 N -0.605 5.605 16 C 0.567 3.433 17 O -0.577 6.577 18 C -0.167 4.167 19 C -0.011 4.011 20 C -0.123 4.123 21 C 0.162 3.838 22 F -0.112 7.112 23 C -0.134 4.134 24 Cl -0.030 7.030 25 C 0.161 3.839 26 F -0.127 7.127 27 C 0.120 3.880 28 H 0.241 0.759 29 H 0.357 0.643 30 H 0.035 0.965 31 H 0.028 0.972 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.194 0.806 37 H 0.208 0.792 38 H 0.066 0.934 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.719 -31.545 2.566 31.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.300 4.300 3 Si 0.953 3.047 4 H -0.223 1.223 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.090 0.910 9 N -0.406 5.406 10 C 0.042 3.958 11 C -0.120 4.120 12 H 0.092 0.908 13 C -0.148 4.148 14 C -0.033 4.033 15 N -0.337 5.337 16 C 0.356 3.644 17 O -0.457 6.457 18 C -0.171 4.171 19 C -0.029 4.029 20 C -0.141 4.141 21 C 0.141 3.859 22 F -0.090 7.090 23 C -0.162 4.162 24 Cl -0.001 7.001 25 C 0.139 3.861 26 F -0.105 7.105 27 C -0.003 4.003 28 H 0.052 0.948 29 H 0.189 0.811 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.211 0.789 37 H 0.225 0.775 38 H 0.084 0.916 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.240 -29.606 2.912 29.833 hybrid contribution -1.544 -0.989 -0.002 1.834 sum 0.696 -30.595 2.910 30.741 Atomic orbital electron populations 1.71002 1.07403 1.27755 1.56484 1.27293 0.97055 1.05022 1.00662 0.82622 0.73342 0.71369 0.77324 1.22287 1.20240 1.19928 1.20419 0.92547 0.87029 1.46390 0.90966 1.42683 1.04782 1.02390 1.90774 1.20727 0.93249 0.83237 0.98565 1.22452 0.97274 0.96593 0.95658 0.90752 1.22702 0.97746 0.90695 1.03700 1.22702 0.90560 0.93864 0.96129 1.48493 1.27463 1.09075 1.48644 1.17964 0.79559 0.87680 0.79210 1.90864 1.53755 1.57948 1.43129 1.19846 0.92623 0.94098 1.10544 1.21655 1.00199 0.89982 0.91021 1.21603 0.93643 0.97970 1.00899 1.17471 0.92553 0.77325 0.98526 1.91613 1.93074 1.31344 1.92965 1.20931 0.89182 0.92126 1.13990 1.98419 1.14927 1.91645 1.95124 1.17247 0.85307 0.84147 0.99356 1.91589 1.63070 1.63774 1.92074 1.22107 0.97862 0.81810 0.98486 0.94837 0.81119 0.94753 0.95384 0.86974 0.88464 0.86677 0.89079 0.78938 0.77485 0.91617 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.40 13.70 21.65 0.30 -63.11 16 2 C -0.11 -6.49 5.50 84.86 0.47 -6.03 16 3 Si 1.13 52.52 29.92 68.60 2.05 54.57 16 4 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.33 -18.79 9.99 84.03 0.84 -17.95 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 9 N -0.76 -38.49 5.45 -343.44 -1.87 -40.36 16 10 C 0.17 6.19 5.71 86.38 0.49 6.68 16 11 C -0.10 -2.81 3.11 -9.40 -0.03 -2.83 16 12 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 13 C -0.11 -1.67 6.42 31.78 0.20 -1.47 16 14 C 0.09 1.13 5.62 86.73 0.49 1.62 16 15 N -0.60 -15.07 3.33 -815.50 -2.71 -17.78 16 16 C 0.57 16.59 7.19 86.71 0.62 17.21 16 17 O -0.58 -23.59 16.86 -4.00 -0.07 -23.66 16 18 C -0.17 -3.38 5.43 -20.05 -0.11 -3.49 16 19 C -0.01 -0.09 8.51 22.52 0.19 0.10 16 20 C -0.12 -0.66 10.00 22.27 0.22 -0.44 16 21 C 0.16 1.99 7.28 22.47 0.16 2.16 16 22 F -0.11 -1.42 16.82 44.97 0.76 -0.67 16 23 C -0.13 -2.50 6.32 22.37 0.14 -2.36 16 24 Cl -0.03 -0.60 28.26 -2.72 -0.08 -0.68 16 25 C 0.16 3.77 7.22 22.68 0.16 3.93 16 26 F -0.13 -3.91 16.02 44.97 0.72 -3.19 16 27 C 0.12 3.88 6.06 86.86 0.53 4.41 16 28 H 0.24 15.74 6.77 -92.71 -0.63 15.11 16 29 H 0.36 19.27 6.37 -92.71 -0.59 18.67 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.03 1.02 8.10 -2.39 -0.02 1.00 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 1.25 8.04 -2.39 -0.02 1.23 16 34 H 0.12 0.53 5.96 -2.38 -0.01 0.51 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.19 0.34 5.87 -2.91 -0.02 0.32 16 37 H 0.21 -0.68 8.06 -2.91 -0.02 -0.70 16 38 H 0.07 2.23 8.00 -2.39 -0.02 2.21 16 39 H 0.04 1.54 8.09 -2.39 -0.02 1.52 16 Total: -1.00 -83.90 351.70 4.15 -79.74 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.67 Total: 13.60 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 4.39 Total: 1.54 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -4.29 Total: -121.25 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.07 Total: -23.66 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 1.48 Total: -3.86 kcal Atomic # 14 Polarization: 52.52 SS G_CDS: 2.05 Total: 54.57 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -83.90 4.15 -79.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567138117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.995 kcal (2) G-P(sol) polarization free energy of solvation -83.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds