Wall clock time and date at job start Wed Apr 1 2020 02:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.49227 * 2 1 4 4 C 1.53241 * 109.49089 * 120.05266 * 2 1 3 5 5 N 1.47083 * 108.51834 * 173.81986 * 4 2 1 6 6 S 1.65602 * 120.88195 * 128.84186 * 5 4 2 7 7 O 1.42094 * 106.39741 * 210.65289 * 6 5 4 8 8 O 1.42099 * 106.39900 * 343.57291 * 6 5 4 9 9 C 1.76198 * 107.21879 * 97.11187 * 6 5 4 10 10 C 1.38631 * 119.75435 * 115.00071 * 9 6 5 11 11 C 1.37603 * 120.26318 * 179.97438 * 10 9 6 12 12 C 1.40743 * 119.77240 * 0.02562 * 11 10 9 13 13 C 1.41393 * 120.24095 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00309 * 205.06401 * 13 12 11 15 15 C 1.39943 * 120.00138 * 25.07231 * 13 12 11 16 16 N 1.30829 * 119.99646 * 16.70219 * 15 13 12 17 17 Si 1.86796 * 120.00129 * 196.71186 * 15 13 12 18 18 H 1.48495 * 109.47348 * 59.99301 * 17 15 13 19 19 H 1.48501 * 109.47206 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47098 * 299.99281 * 17 15 13 21 21 C 1.40681 * 119.52430 * 0.02562 * 12 11 10 22 22 C 1.37760 * 119.72632 * 359.71529 * 21 12 11 23 23 Cl 1.73608 * 119.88720 * 180.27378 * 22 21 12 24 24 C 1.47085 * 118.23710 * 308.81158 * 5 4 2 25 25 C 1.53241 * 108.51657 * 51.18735 * 24 5 4 26 26 N 1.46897 * 109.36541 * 306.15609 * 25 24 5 27 27 H 1.09000 * 109.47515 * 299.94860 * 1 2 3 28 28 H 1.09005 * 109.46949 * 59.94436 * 1 2 3 29 29 H 1.08998 * 109.47032 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.62620 * 54.10718 * 4 2 1 31 31 H 1.08999 * 109.63045 * 293.52741 * 4 2 1 32 32 H 1.07998 * 119.87427 * 359.97319 * 10 9 6 33 33 H 1.07997 * 120.11841 * 180.02562 * 11 10 9 34 34 H 0.96999 * 119.99893 * 180.02562 * 16 15 13 35 35 H 1.07996 * 120.13905 * 179.97438 * 21 12 11 36 36 H 1.08997 * 109.62840 * 291.48112 * 24 5 4 37 37 H 1.08997 * 109.78818 * 170.98916 * 24 5 4 38 38 H 1.09001 * 109.49126 * 66.13617 * 25 24 5 39 39 H 1.08998 * 109.48714 * 186.17985 * 25 24 5 40 40 H 1.00895 * 110.99969 * 187.27001 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0413 -0.7234 1.2504 5 7 3.5043 -0.8423 1.1559 6 16 4.4788 -0.3581 2.4043 7 8 5.6953 0.0816 1.8162 8 8 3.6785 0.4647 3.2421 9 6 4.8719 -1.7942 3.3463 10 6 6.1837 -2.2381 3.4091 11 6 6.5026 -3.3581 4.1421 12 6 5.4912 -4.0547 4.8296 13 6 5.8076 -5.2071 5.5853 14 1 5.0519 -5.9564 5.7696 15 6 7.0999 -5.3767 6.0947 16 7 7.9150 -4.3557 6.1639 17 14 7.6613 -7.0610 6.6755 18 1 7.5916 -8.0227 5.5462 19 1 9.0603 -6.9746 7.1660 20 1 6.7784 -7.5248 7.7759 21 6 4.1629 -3.5968 4.7587 22 6 3.8671 -2.4701 4.0232 23 17 2.2304 -1.8972 3.9386 24 6 4.0788 -1.4031 -0.0764 25 6 3.4872 -0.6529 -1.2745 26 7 2.0207 -0.6936 -1.1989 27 1 -0.3634 0.5130 0.8904 28 1 -0.3633 0.5147 -0.8895 29 1 -0.3633 -1.0276 -0.0005 30 1 1.5961 -1.7168 1.3064 31 1 1.7771 -0.1500 2.1389 32 1 6.9586 -1.7027 2.8806 33 1 7.5254 -3.7015 4.1898 34 1 8.8109 -4.4733 6.5166 35 1 3.3789 -4.1239 5.2820 36 1 3.8294 -2.4618 -0.1479 37 1 5.1620 -1.2819 -0.0671 38 1 3.8237 0.3837 -1.2568 39 1 3.8170 -1.1266 -2.1991 40 1 1.6048 -0.3108 -2.0346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576813953.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:15 Heat of formation + Delta-G solvation = -61.957073 kcal Electronic energy + Delta-G solvation = -26436.027989 eV Core-core repulsion = 22595.885771 eV Total energy + Delta-G solvation = -3840.142218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.66581 -37.87124 -36.62328 -35.76045 -35.14139 -34.05270 -33.72840 -32.24205 -30.46142 -29.37289 -27.43861 -26.04135 -25.27710 -22.53164 -21.67084 -21.40809 -20.22729 -18.41048 -17.84299 -17.50083 -16.61219 -15.82916 -15.70113 -15.49113 -15.12224 -14.58677 -14.46584 -14.30958 -13.83838 -13.62139 -13.39002 -12.85603 -12.62770 -12.55964 -12.28245 -12.14765 -12.03518 -11.96096 -11.72557 -11.51368 -11.42129 -11.35780 -11.17726 -11.06722 -10.94969 -10.75736 -10.63406 -10.49778 -10.25724 -10.04200 -9.63339 -9.57023 -8.94578 -8.35840 -8.13698 -7.70771 -7.25992 -4.95387 1.13877 2.04958 2.61422 2.81212 2.84456 2.84776 2.90370 3.52669 3.58972 4.05955 4.10732 4.46366 4.79853 4.81288 5.07614 5.17781 5.21263 5.26322 5.32357 5.43881 5.56200 5.65366 5.75193 5.81080 5.92825 6.00371 6.04093 6.23072 6.32420 6.47935 6.53262 6.65789 6.73532 6.88781 6.94673 6.97493 7.14332 7.29227 7.40136 7.55966 7.73651 8.13850 8.33281 8.41728 9.65008 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.019794 B = 0.003543 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.238363 B = 7901.226896 C = 8221.536387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 H 0.041 0.959 4 C 0.131 3.869 5 N -1.001 6.001 6 S 2.694 3.306 7 O -0.982 6.982 8 O -0.968 6.968 9 C -0.790 4.790 10 C -0.009 4.009 11 C -0.180 4.180 12 C 0.144 3.856 13 C -0.425 4.425 14 H 0.091 0.909 15 C 0.070 3.930 16 N -0.760 5.760 17 Si 0.922 3.078 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.260 1.260 21 C -0.224 4.224 22 C 0.094 3.906 23 Cl -0.102 7.102 24 C 0.126 3.874 25 C 0.048 3.952 26 N -0.682 5.682 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.293 0.707 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.035 0.965 39 H 0.084 0.916 40 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.071 2.398 -10.021 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.042 4.042 3 H 0.059 0.941 4 C 0.005 3.995 5 N -0.837 5.837 6 S 2.793 3.207 7 O -0.973 6.973 8 O -0.959 6.959 9 C -0.884 4.884 10 C -0.030 4.030 11 C -0.200 4.200 12 C 0.139 3.861 13 C -0.452 4.452 14 H 0.109 0.891 15 C -0.153 4.153 16 N -0.382 5.382 17 Si 0.745 3.255 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.184 1.184 21 C -0.245 4.245 22 C 0.066 3.934 23 Cl -0.074 7.074 24 C 0.000 4.000 25 C -0.083 4.083 26 N -0.314 5.314 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.134 0.866 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.102 0.898 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.703 2.804 -9.482 11.946 hybrid contribution 0.338 -0.474 0.289 0.650 sum -6.365 2.330 -9.193 11.422 Atomic orbital electron populations 1.21787 0.93785 1.02883 1.01888 1.21888 0.95291 0.95581 0.91403 0.94094 1.21651 0.79242 1.01367 0.97270 1.57856 1.16119 1.80003 1.29741 1.01334 0.72207 0.74604 0.72584 1.93462 1.45261 1.80834 1.77740 1.93516 1.69802 1.66154 1.66397 1.29145 1.00386 1.29309 1.29596 1.20276 0.92250 0.94983 0.95448 1.21417 1.00355 0.97744 1.00481 1.17717 0.90169 0.90631 0.87544 1.19935 0.96112 1.03820 1.25308 0.89088 1.26179 0.95998 0.99252 0.93856 1.69797 1.07645 1.31511 1.29197 0.86109 0.78489 0.80795 0.80128 1.18217 1.19763 1.18411 1.20941 0.97704 0.98596 1.07235 1.19965 0.81893 0.94640 0.96924 1.98313 1.23220 1.88680 1.97166 1.21417 0.97926 0.98012 0.82603 1.22249 0.87953 0.99220 0.98833 1.60284 1.06585 1.59897 1.04684 0.91716 0.92609 0.91427 0.90769 0.88529 0.86646 0.85417 0.89582 0.87034 0.90830 0.88979 0.94709 0.89769 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.43 37.16 0.35 -1.04 16 2 C 0.07 0.84 3.18 -67.56 -0.21 0.63 16 3 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 4 C 0.13 1.94 4.06 -3.60 -0.01 1.93 16 5 N -1.00 -16.52 3.29 -113.23 -0.37 -16.89 16 6 S 2.69 54.66 5.12 -107.50 -0.55 54.11 16 7 O -0.98 -21.25 15.77 -57.17 -0.90 -22.15 16 8 O -0.97 -21.27 14.92 -57.17 -0.85 -22.12 16 9 C -0.79 -17.68 5.93 -39.25 -0.23 -17.91 16 10 C -0.01 -0.21 9.52 -39.67 -0.38 -0.59 16 11 C -0.18 -4.36 8.69 -38.87 -0.34 -4.69 16 12 C 0.14 3.52 5.57 -106.83 -0.60 2.92 16 13 C -0.43 -10.00 9.06 -37.74 -0.34 -10.34 16 14 H 0.09 2.00 7.90 -52.48 -0.41 1.59 16 15 C 0.07 1.56 5.16 -17.34 -0.09 1.47 16 16 N -0.76 -17.51 10.93 55.55 0.61 -16.90 16 17 Si 0.92 16.33 29.59 -169.99 -5.03 11.30 16 18 H -0.26 -4.54 7.11 56.52 0.40 -4.13 16 19 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 20 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 21 C -0.22 -5.20 9.57 -38.83 -0.37 -5.57 16 22 C 0.09 2.10 6.29 -39.57 -0.25 1.85 16 23 Cl -0.10 -1.97 23.12 -51.86 -1.20 -3.17 16 24 C 0.13 1.78 6.64 -3.60 -0.02 1.76 16 25 C 0.05 0.55 6.69 -3.70 -0.02 0.53 16 26 N -0.68 -7.50 6.49 -106.43 -0.69 -8.19 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.09 7.73 -51.93 -0.40 0.69 16 31 H 0.10 1.53 5.78 -51.93 -0.30 1.23 16 32 H 0.12 2.48 7.31 -52.49 -0.38 2.10 16 33 H 0.13 3.10 6.16 -52.49 -0.32 2.78 16 34 H 0.29 6.04 8.30 -40.82 -0.34 5.71 16 35 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.30 7.13 -51.93 -0.37 0.93 16 38 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.34 2.95 8.78 -39.29 -0.34 2.60 16 LS Contribution 344.47 15.07 5.19 5.19 Total: -1.00 -28.10 344.47 -11.38 -39.48 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.05 Total: 8.42 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -2.52 Total: -29.06 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -0.46 Total: -41.99 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -1.75 Total: -44.27 kcal Atomic # 14 Polarization: 16.33 SS G_CDS: -5.03 Total: 11.30 kcal Atomic # 16 Polarization: 54.66 SS G_CDS: -0.55 Total: 54.11 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -1.20 Total: -3.17 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.10 -11.38 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576813953.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.480 kcal (2) G-P(sol) polarization free energy of solvation -28.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds